BAC Information

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BAC

Clone NameB6Ng01-060I18
Chromosome10 (Build37)
Map Location 16,766,976 - 16,837,949
singlet/doubletdoublet
Overlap geneLOC627511
Upstream geneLOC382457, LOC546472, LOC100039576
Downstream geneCited2, Txlnb, LOC665321, Heca, 3110003A17Rik, Reps1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-060I18.bB6Ng01-060I18.g
ACCDH881491DH881492
length1,115948
definitionDH881491|Mus musculus domesticus DNA, BAC clone: B6Ng01-060I18, 5' end.DH881492|Mus musculus domesticus DNA, BAC clone: B6Ng01-060I18, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(16,766,976 - 16,768,093)(16,837,387 - 16,837,949)
sequence
gaattctgcctatcaccagcttctataggcagcaagctgaggataaggaa
ggaattcaaaattctgtgctctgcatgtttctctcattcagccaaacaag
gtgagggttgttgtggcaaatatctaatttttttctctccctttaattgc
ttacattcttcctttgctccacaattctctaggtaaacatccccattgct
caatctcataactaccttctactaatgacagcaagctttactaacacagt
tttttttaacgttataattttgcaatttaattttgtagctttgaaaattc
ttgcttgctagttgcatgataaatgaattttatagaaaccattcttagct
ttaatccccagctcccattcctcaaggaggcagaaaattaatgttctagt
tatttatggctatgtaacaaaccacccagacacttagtgatttgaaataa
caatcatcatttattttgctcacaaatttacagtttgggcaaggtttggc
aggaaaggttcatctctgctacagatggaatgaactgtgttcatttaatt
ggatctagaagatgtactcctaagatgctccaatctcatggctggcaagc
tggagtcccactggggccattggccagtgattttagtgtcttggtgtctt
tccaggagggctctccataatgctgctccttcatagtataggagctgtgt
ttccattaaagatgtgaaggaatggaaaccctgactgtatcgtaagtttg
ggttaatagttcaggagaatgacccagagtcatctttgctatgctttata
actcaaagttcttatagaacctcccagacccaagggtgcttgggaaggag
agctggggtcacagactatgactctcaaattgtaaaagacaaataatcca
tgcccatctttaatcacttatactttgcctagtaatgtctagataactaa
ggtcacgtttaaggccctgcggtttgtgtacttaaaaatgggggaagggc
aaatcatgaaaattgtaaagcttagtttcattagtgcttttgggcatcag
ttgtagaaaaatggggatcttaacatacttgtccgcctagcatagcaggc
ttctcaagctcaggc
gaattcctgatctttccaagacttttatcaggaaggggtgttgatttttg
tcaaatgcttttttcagcatctaatgaaataatcatgtgttttttctttg
agtttgtttatatagtggattacgttggtgggtttccatatattgaacca
tctctgcagccccgggatgaagcctacttgttcatgatggatggtcattt
tgatgtgttcttggatccagtttgtgagaattttattgagtattttggca
tcaatattcttaaatgaaattggtctgatgttctctttctttggcctttt
tgtggtttaggtatgagcgtatttgtgacttcttaaaatgaattgggtag
tgctccttctgtttctattttgtggaatagtttgaagagtattggtatta
ggtctttgaaagtctgacagaattctgcactaaacctatcctggactttt
tttggttggcagacttttgatggctacttctaattctttaggggttatgg
gactgtttagatggtttatttgctccttatttaactttggtgtctggtat
ctgtctagaaaattgtctttttcatccagattttccagtttttttgagta
tagtcttttgttgtgggatctgatgatttttttttttttttttggatttc
attggtctggttcatggtttctgatttctgacacaccatcaatactagac
tatctctgagacttctctcagatgtcctgctgtgctccaaagtcatggtg
attatgcagctcttattctacaggatcagctcctacacacactctggtgg
ttcattgatggtttagatgtttggggtagactgactcaaagcactggata
tgggtcttcaatggttgcagagttggtcaggcagagcctttggaaggtgg
ggcagaggaggggtgttttaaaaaagcatgttgcatctgctgtcacaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_16766976_16768093
seq2: B6Ng01-060I18.b_43_1157

seq1  GAATTCTGCCTATCACCAGCTTCTATAGGCAGCAAGCTGAGGATAAGGAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGCCTATCACCAGCTTCTATAGGCAGCAAGCTGAGGATAAGGAA  50

seq1  GGAATTCAAAATTCTGTGCTCTGCATGTTTCTCTCATTCAGCCAAACAAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAATTCAAAATTCTGTGCTCTGCATGTTTCTCTCATTCAGCCAAACAAG  100

seq1  GTGAGGGTTGTTGTGGCAAATATCTAATTTTTTTCTCTCCCTTTAATTGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGGGTTGTTGTGGCAAATATCTAATTTTTTTCTCTCCCTTTAATTGC  150

seq1  TTACATTCTTCCTTTGCTCCACAATTCTCTAGGTAAACATCCCCATTGCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACATTCTTCCTTTGCTCCACAATTCTCTAGGTAAACATCCCCATTGCT  200

seq1  CAATCTCATAACTACCTTCTACTAATGACAGCAAGCTTTACTAACACAGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATCTCATAACTACCTTCTACTAATGACAGCAAGCTTTACTAACACAGT  250

seq1  TTTTTTTAACGTTATAATTTTGCAATTTAATTTTGTAGCTTTGAAAATTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTAACGTTATAATTTTGCAATTTAATTTTGTAGCTTTGAAAATTC  300

seq1  TTGCTTGCTAGTTGCATGATAAATGAATTTTATAGAAACCATTCTTAGCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTTGCTAGTTGCATGATAAATGAATTTTATAGAAACCATTCTTAGCT  350

seq1  TTAATCCCCAGCTCCCATTCCTCAAGGAGGCAGAAAATTAATGTTCTAGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATCCCCAGCTCCCATTCCTCAAGGAGGCAGAAAATTAATGTTCTAGT  400

seq1  TATTTATGGCTATGTAACAAACCACCCAGACACTTAGTGATTTGAAATAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTATGGCTATGTAACAAACCACCCAGACACTTAGTGATTTGAAATAA  450

seq1  CAATCATCATTTATTTTGCTCACAAATTTACAGTTTGGGCAAGGTTTGGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATCATCATTTATTTTGCTCACAAATTTACAGTTTGGGCAAGGTTTGGC  500

seq1  AGGAAAGGTTCATCTCTGCTACAGATGGAATGAACTGTGTTCATTTAATT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAAGGTTCATCTCTGCTACAGATGGAATGAACTGTGTTCATTTAATT  550

seq1  GGATCTAGAAGATGTACTCCTAAGATGCTCCAATCTCATGGCTGGCAAGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATCTAGAAGATGTACTCCTAAGATGCTCCAATCTCATGGCTGGCAAGC  600

seq1  TGGAGTCCCACTGGGGCCATTGGCCAGTGATTTTAGTGTCTTGGTGTCTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGTCCCACTGGGGCCATTGGCCAGTGATTTTAGTGTCTTGGTGTCTT  650

seq1  TCCAGGAGGGCTCTCCATAATGCTGCTCCTTCATAGTATAGGAGCTGTGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGGAGGGCTCTCCATAATGCTGCTCCTTCATAGTATAGGAGCTGTGT  700

seq1  TTCCATTAAAGATGTGAAGGAATGGAAACCCTGACTGTATCGTAAGTTTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCATTAAAGATGTGAAGGAATGGAAACCCTGACTGTATCGTAAGTTTG  750

seq1  GGTTAATAGTTCAGGAGAATGACCCAGAGTCATCTTTGCTATGCTTTATA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTAATAGTTCAGGAGAATGACCCAGAGTCATCTTTGCTATGCTTTATA  800

seq1  ACTCAAAGTTCTTATAGAACCTCCCAGACCCAAGGGTGCTTGGGAAGGAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCAAAGTTCTTATAGAACCTCCCAGACCCAAGGGTGCTTGGGAAGGAG  850

seq1  AGCTGGGGTCACAGACTATGACTCTCAAATTGTAAAAGACAAATAATCCA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGGGGTCACAGACTATGACTCTCAAATTGTAAAAGACAAATAATCCA  900

seq1  TGCCCATCTTTAATCACTTATACTTTGCCTAGTAATGTCTAGATAACTAA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCCATCTTTAATCACTTATACTTTGCCTAGTAATGTCTAGATAACTAA  950

seq1  GGTCACGTTTAAGGCCCTGCGGTTTGTTGTACTTAAAAATGGGGGAAGGG  1000
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  GGTCACGTTTAAGGCCCTGCGGTTTG-TGTACTTAAAAATGGGGGAAGGG  999

seq1  CAAATCATGAAAATTGTAAAGCTTAGTTTCATTAGTGCTTTTGGGCATTC  1050
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  CAAATCATGAAAATTGTAAAGCTTAGTTTCATTAGTGCTTTTGGGCA-TC  1048

seq1  AGTTGTAAGAAAAATGGGGATC-TAACATACTTGTCCGCCTAGCATAGCA  1099
      |||||| ||||||||||||||| |||||||||||||||||||||||||||
seq2  AGTTGT-AGAAAAATGGGGATCTTAACATACTTGTCCGCCTAGCATAGCA  1097

seq1  GGCTTCTCATAGCTCAGGC  1118
      ||||||||| |||||||||
seq2  GGCTTCTCA-AGCTCAGGC  1115

seq1: chr10_16837387_16837949
seq2: B6Ng01-060I18.g_451_1014 (reverse)

seq1  TTGTAGACAGCAGGTGCCAGCATGCTTATTTAAAACA-CCCTCCTCTGCC  49
      |||| |||||||| || || ||||||| ||||||||| ||||||||||||
seq2  TTGT-GACAGCAGATG-CAACATGCTTTTTTAAAACACCCCTCCTCTGCC  48

seq1  CATCCTTCCAAAGGCTCTGCCTGACCAACTCTGCTACCATTG-AGGCCCA  98
      |  ||||||||||||||||||||||||||||||| ||||||| || ||||
seq2  CCACCTTCCAAAGGCTCTGCCTGACCAACTCTGCAACCATTGAAGACCCA  98

seq1  TATCCAGTGCTTTGAGTCAGTCTACCCC-AACATCTAAACCATCAATGAA  147
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  TATCCAGTGCTTTGAGTCAGTCTACCCCAAACATCTAAACCATCAATGAA  148

seq1  CCACCAGAGTGTGTGTAGGAGCTGATCCTGTAGAATAAGAGCTGCATAAT  197
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACCAGAGTGTGTGTAGGAGCTGATCCTGTAGAATAAGAGCTGCATAAT  198

seq1  CACCATGACTTTGGAGCACAGCAGGACATCTGAGAGAAGTCTCAGAGATA  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCATGACTTTGGAGCACAGCAGGACATCTGAGAGAAGTCTCAGAGATA  248

seq1  GTCTAGTATTGATGGTGTGTCAGAAATCAGAAACCATGAACCAGACCAAT  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTAGTATTGATGGTGTGTCAGAAATCAGAAACCATGAACCAGACCAAT  298

seq1  GAAATCCAAAAAAAAAAAAAAAAATCATCAGATCCCACAACAAAAGACTA  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATCCAAAAAAAAAAAAAAAAATCATCAGATCCCACAACAAAAGACTA  348

seq1  TACTCAAAAAAACTGGAAAATCTGGATGAAAAAGACAATTTTCTAGACAG  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTCAAAAAAACTGGAAAATCTGGATGAAAAAGACAATTTTCTAGACAG  398

seq1  ATACCAGACACCAAAGTTAAATAAGGAGCAAATAAACCATCTAAACAGTC  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACCAGACACCAAAGTTAAATAAGGAGCAAATAAACCATCTAAACAGTC  448

seq1  CCATAACCCCTAAAGAATTAGAAGTAGCCATCAAAAGTCTGCCAACCAAA  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATAACCCCTAAAGAATTAGAAGTAGCCATCAAAAGTCTGCCAACCAAA  498

seq1  AAAAGTCCAGGATAGGTTTAGTGCAGAATTCTGTCAGACTTTCAAAGACC  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGTCCAGGATAGGTTTAGTGCAGAATTCTGTCAGACTTTCAAAGACC  548

seq1  TAATACCAATACTCTT  563
      ||||||||||||||||
seq2  TAATACCAATACTCTT  564