BAC Information

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BAC

Clone NameB6Ng01-061D09
Chromosome17 (Build37)10 (Build37)
Map Location 92,642,568 - 92,643,436104,053,911 - 104,054,363
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC100043741, LOC100043742, EG640442
Downstream geneLOC627395, LOC676141, LOC668877, LOC100043746, LOC100043747, LOC100043748, LOC100043907, Adcyap1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-061D09.bB6Ng01-061D09.g
ACCDH881953DH881954
length1,136695
definitionDH881953|Mus musculus domesticus DNA, BAC clone: B6Ng01-061D09, 5' end.DH881954|Mus musculus domesticus DNA, BAC clone: B6Ng01-061D09, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(92,642,568 - 92,643,436)(104,053,911 - 104,054,363)
sequence
gaattcttcaccccaattaagcaagaagcaattacataaatgaatcattg
tcctgatccattaagtttggctggatagttctagttatttgatttgttat
ggttgttattatctagggtggtaagcttttttgttgttgtttaattatta
tatattaatacaaatttaatgttgttttacttagttattgtatattatag
aaattgtaggttgttttgattaattattgtatattgacagaaatttgatg
gtgtttttttagactgtagtttgactatcttgtacaaaatgtttttattt
aaggtgtgatataatgtagttttgtaattcttataagatttttctattgt
gtgtaaaatgatgttagaagaaaagattttttttaaaaaaacagaagggg
aaaaatgaagtatacatttctggtttcctaagacagtagaagagaccttc
aattattagtttttattaattgtcatatagatttaagtctttaagttact
tcctggattttgtagttatttaccacaaattttcatatgcagtgtcctca
ttatcttttgcttaaaatatagctttagtttctgctgtcatttctttttt
attacaggtcaattggaaacatgatgcctaatttctaatagctgcagtca
ttctaactatcttttacttgtttatttctagtttaataattaatggtcaa
aaacattttgacaaataattttatactttgaattttatttagttcacttt
aaagatacaagatatgtaaaattttttatccatttaatttctatatctta
gtaaactttggataatttttagattttatgtagtaatggacatattttag
atctatgtcaattgtattttaattattcatgtatattatacaattgtcta
ccatggaatttctgagtgactaagtcatattccatgttcactgttgctat
aattttctactcatttcatagtaattttgccactatgcattaaataaaat
tgttgaatatttatagtctagataagttattaatttatcattttcaaaag
aaaccagcattctttgatcttgtatgtatgctaatatttttattaaaaca
tgtttattatttagaaaatttattgaaattatcatg
gaattctcacctgaggaataccgaatggcagagaagcacctgaaaaaatg
ttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgagat
tccacctcacaccagtcagaatggctaagatcaaaaattcaggtgacagc
agatgctggcgtggatgtggagaaaaaggaacactcctccattgttggtg
ggagtgcaggcttgtacaaccactctggaaatcagtctggcggttcctca
gaaaactggacatagtactaccggaggatccagcaatacctctcctgggc
atatatccagaagatgccccaactggtaagaaggatacatgctccactat
gttcatagcagccttatttataatagccagaagctggaaagaacctagat
gcccctcaacagaggaatggatacagaaaatgtggtacatctacacaatg
gagtactactcagctattataaagaatgaatttatgaaattcctagccaa
atggatggacctggaggccatcatcctgagtgaggtaacacattcacaaa
gaaactcacacaatatgtactcactgataagtggatattagccccaaacc
taggatacccaagatataagatataatttgctaaacacatgaaactcaga
agaatgaagactgaagtgtgggcactatgcctctctaaattggga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_92642568_92643436
seq2: B6Ng01-061D09.b_319_1181

seq1  ACTATCTTGTACAAAATGTTTTTATTTAAGGTGTGATATAATGTAGTTTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTATCTTGTACAAAATGTTTTTATTTAAGGTGTGATATAATGTAGTTTT  50

seq1  GTAATTCTTATAAGATTTTTCTATTGTGTGTAAAATGATGTTAGAAGAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAATTCTTATAAGATTTTTCTATTGTGTGTAAAATGATGTTAGAAGAAA  100

seq1  AGATTTTTTTTAAAAAAACAGAAGGGGAAAAATGAAGTATACATTTCTGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTTTTTTTAAAAAAACAGAAGGGGAAAAATGAAGTATACATTTCTGG  150

seq1  TTTCCTAAGACAGTAGAAGAGACCTTCAATTATTAGTTTTTATTAATTGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCTAAGACAGTAGAAGAGACCTTCAATTATTAGTTTTTATTAATTGT  200

seq1  CATATAGATTTAAGTCTTTAAGTTACTTCCTGGATTTTGTAGTTATTTAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATAGATTTAAGTCTTTAAGTTACTTCCTGGATTTTGTAGTTATTTAC  250

seq1  CACAAATTTTCATATGCAGTGTCCTCATTATCTTTTGCTTAAAATATAGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAAATTTTCATATGCAGTGTCCTCATTATCTTTTGCTTAAAATATAGC  300

seq1  TTTAGTTTCTGCTGTCATTTCTTTTTTATTACAGGTCAATTGGAAACATG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGTTTCTGCTGTCATTTCTTTTTTATTACAGGTCAATTGGAAACATG  350

seq1  ATGCCTAATTTCTAATAGCTGCAGTCATTCTAACTATCTTTTACTTGTTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCCTAATTTCTAATAGCTGCAGTCATTCTAACTATCTTTTACTTGTTT  400

seq1  ATTTCTAGTTTAATAATTAATGGTCAAAAACATTTTGACAAATAATTTTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCTAGTTTAATAATTAATGGTCAAAAACATTTTGACAAATAATTTTA  450

seq1  TACTTTGAATTTTATTTAGTTCACTTT-AAGATACAAGATATGTAAAA-T  498
      ||||||||||||||||||||||||||| |||||||||||||||||||| |
seq2  TACTTTGAATTTTATTTAGTTCACTTTAAAGATACAAGATATGTAAAATT  500

seq1  TTTTATCCATTTAATTTCTATATCTTAGTAAACTTTGGATAATTTTTAGA  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTATCCATTTAATTTCTATATCTTAGTAAACTTTGGATAATTTTTAGA  550

seq1  TTTTATGTAGTAATGGACATA-TTTAGATCTATGTCAATTGTATTTTAAT  597
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  TTTTATGTAGTAATGGACATATTTTAGATCTATGTCAATTGTATTTTAAT  600

seq1  TATTCATGTATATTATACAATTGTCTACCATGGAATTTCTGAGTGACTAA  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCATGTATATTATACAATTGTCTACCATGGAATTTCTGAGTGACTAA  650

seq1  GTCATATTCCATGTTCACTGTTGCTATTAATTTTCTACTCATTTCATTAG  697
      |||||||||||||||||||||||||| ||||||||||||||||||| |||
seq2  GTCATATTCCATGTTCACTGTTGCTA-TAATTTTCTACTCATTTCA-TAG  698

seq1  TAATTTTTGCCACTATGCATTAAATTAAAATTGTTG-ATATTTCATAGTC  746
      ||| |||||||||||||||||||| ||||||||||| |||||| ||||||
seq2  TAA-TTTTGCCACTATGCATTAAA-TAAAATTGTTGAATATTT-ATAGTC  745

seq1  TTAGATAAGTTATTAATTTTATCATTTTCAAAAGATACCAGCA-TCTTTG  795
       ||||||||||||||| |||||||||||||||||| ||||||| ||||||
seq2  -TAGATAAGTTATTAA-TTTATCATTTTCAAAAGAAACCAGCATTCTTTG  793

seq1  AACTCTGTAATTAATGTCAATATTTATATTATAACATGTTTATTTATTTA  845
      | || ||| ||  |||  ||||||| ||||| |||||||||| |||||||
seq2  ATCT-TGT-ATGTATGCTAATATTTTTATTAAAACATGTTTA-TTATTTA  840

seq1  GAAATTTTATTGAAATTATTCATG  869
      |||| ||||||||||||| |||||
seq2  GAAAATTTATTGAAATTA-TCATG  863

seq1: chr10_104053911_104054363
seq2: B6Ng01-061D09.g_72_524 (reverse)

seq1  CTCCATTGTGTAAATGTACCACATTTTCTGTATCTATTCCTCTGTTGAGG  50
      |||||||||||| ||||||||||||||||||||| |||||||||||||||
seq2  CTCCATTGTGTAGATGTACCACATTTTCTGTATCCATTCCTCTGTTGAGG  50

seq1  GGCATCTGGGTTCTTTCCAGCTCCTGGCTATTATAAATAAGGCTGCTATG  100
      ||||||| |||||||||||||| |||||||||||||||||||||||||||
seq2  GGCATCTAGGTTCTTTCCAGCTTCTGGCTATTATAAATAAGGCTGCTATG  100

seq1  AATATAGTGGAGCATGTGTCCTTCTTACCGGTTGGGGCATCTTCTGGATA  150
      || |||||||||||||| ||||||||||| ||||||||||||||||||||
seq2  AACATAGTGGAGCATGTATCCTTCTTACCAGTTGGGGCATCTTCTGGATA  150

seq1  TATGCCCAGAAGAGGTATTGCTGGATCCTCCGGTAGTACTATGTCCAATT  200
      ||||||||| ||||||||||||||||||||||||||||||||||||| ||
seq2  TATGCCCAGGAGAGGTATTGCTGGATCCTCCGGTAGTACTATGTCCAGTT  200

seq1  TTCTGACGAACCGCCAGACGGATTTCCAGAGTGGTTGTACAAGCCTGCAA  250
      |||||| |||||||||||| ||||||||||||||||||||||||||||| 
seq2  TTCTGAGGAACCGCCAGACTGATTTCCAGAGTGGTTGTACAAGCCTGCAC  250

seq1  TCCCACCAACAATGGAGGAGTGTTCCTCTTTCTCCACATCCTCGCCAGCA  300
      ||||||||||||||||||||||||||| ||||||||||||| ||||||||
seq2  TCCCACCAACAATGGAGGAGTGTTCCTTTTTCTCCACATCCACGCCAGCA  300

seq1  TCTGCTGTCACCTGAATTTTTGATCTTAGCCATTCTGACTGGTGTGAGGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCTGTCACCTGAATTTTTGATCTTAGCCATTCTGACTGGTGTGAGGT  350

seq1  GGAATCTCAGGGTTGTTTTGATTTGCATTTCCCTGATGATTAAGGATGTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAATCTCAGGGTTGTTTTGATTTGCATTTCCCTGATGATTAAGGATGTT  400

seq1  GAACATTTTTTCAGGTGCTTCTCTGCCATTCGGTATTCCTCAGGTGAGAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACATTTTTTCAGGTGCTTCTCTGCCATTCGGTATTCCTCAGGTGAGAA  450

seq1  TTC  453
      |||
seq2  TTC  453