BAC Information

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BAC

Clone NameB6Ng01-061E23
Chromosome16 (Build37)10 (Build37)
Map Location 75,577,890 - 75,578,691104,053,903 - 104,054,363
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC665042, D930038D03Rik
Downstream geneRbm11, Stch, LOC546667, Samsn1, 4930578N18Rik, LOC100039457, Nrip1, LOC100039316
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-061E23.bB6Ng01-061E23.g
ACCDH882023DH882024
length9881,007
definitionDH882023|Mus musculus domesticus DNA, BAC clone: B6Ng01-061E23, 5' end.DH882024|Mus musculus domesticus DNA, BAC clone: B6Ng01-061E23, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(75,577,890 - 75,578,691)(104,053,903 - 104,054,363)
sequence
gaattcacttgaaatactgagaaaagtgaatttgaaaatagatgcggatt
taactttaaatgttaaaaagctgaataacacagaaagttaacagcacaat
tcatccatacactgctgtacactgatcttttactaataaatagaatgtag
gtgaggagtatagaaaattagacacatcctcaactgaaagtattacaaga
tttctatttttatctccagaaaatacaactggtttaaatcactggaagca
tggggttaggggaagaaaagagttattatgtaactctaggtgatgtggtt
cccccaatcccaatgccagatatgtcatagttccttgtaagccattgtct
aaggaggccccagagaatcccagaatgacacagggcattgccatttttct
tggttgtccaaacagacctagttggcaagatgttgttgtaaatgacaaca
tagcctgtgggtagaagatacagagtaaataagctatttctctggaaatt
tcctagctactggttctctttcctagtgccagtcagtgctatgtgttgat
tgggaagaagagacataagcattctttactcaactgtgagccctctgaac
acaaatactacttcaccagaaagattcactcactcactttgtgcaagagt
gacatggctgttatggagataaatacctgctctctctgaatagattggaa
gtccagtccaaaaaaaaaaaaaaaaaaaaaggaattcatgccttgtaata
taaatccgttcaaaactctgtgagcaagaagacctcagactctagagaag
atcttactaccactctttagataaattgacaagctgccttctaaatgtgt
gcatttaaagtttattattattattactattattattagtagtagtagtt
attttatttattgacatttcaagtgttatcctccttcccagtttccactc
cacaaactccctatcccctttcccctgcctctatgagg
gaattctcacctgaggaataccgaatggcagagaagcacctgaaaaaatg
ttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgagat
tccacctcacaccagtcagaatgtctaagatcaaaaattcaggtgacagc
agatgctggcgaggatgtggagaaagaggaacactcctccattgttggtg
ggattgcaggcttgtacaaccactctggaaatccgtctggcggttcctca
gaaaattggacatagtactaccggaggatccagcaatacctctcttgggc
atatatccagaagatgccccaactggtaagaaggacacatgctccactat
gttcatagcagccttatttataatagccagaagctggaaagaacccagat
gcccctcaacagaggaatggatacagaaaatgtggtacatctacacaatg
gagtactactcagctattaaaaagaatgaatttatgaaattcctagccaa
atggatggacctggagggcatcatcctgagtgaggtaacacattcacaaa
ggaactcacacaatatgtactcactgataagtggatattagcccaaaacc
tagaatacccaagatataagatacaatttcctaaacacatgaaactcaag
aaaaatgaagactgaagtgtggacactatacccctccttagaagttggaa
caaaacacccttggaaggagttacagagacaaagtttggagctgagatga
aaggatggaccatgtagagactgccttatccagggatccaccccataatc
agcatccaaacgctgacaccattgcatacactagcaagattttatcgaaa
ggacccagatgtagctgtctcttgtgagactatgccggggtctagcaaac
acagagtggatgcccacagtcagctaatggatggatcacagggctcccaa
tggaggagctagagaaagtacccaaggagctaaagggatctgcaccctat
aggtgga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_75577890_75578691
seq2: B6Ng01-061E23.b_46_847

seq1  GAATTCACTTGAAATACTGAGAAAAGTGAATTTGAAAATAGATGCGGATT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTTGAAATACTGAGAAAAGTGAATTTGAAAATAGATGCGGATT  50

seq1  TAACTTTAAATGTTAAAAAGCTGAATAACACAGAAAGTTAACAGCACAAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTTTAAATGTTAAAAAGCTGAATAACACAGAAAGTTAACAGCACAAT  100

seq1  TCATCCATACACTGCTGTACACTGATCTTTTACTAATAAATAGAATGTAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATCCATACACTGCTGTACACTGATCTTTTACTAATAAATAGAATGTAG  150

seq1  GTGAGGAGTATAGAAAATTAGACACATCCTCAACTGAAAGTATTACAAGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGGAGTATAGAAAATTAGACACATCCTCAACTGAAAGTATTACAAGA  200

seq1  TTTCTATTTTTATCTCCAGAAAATACAACTGGTTTAAATCACTGGAAGCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTATTTTTATCTCCAGAAAATACAACTGGTTTAAATCACTGGAAGCA  250

seq1  TGGGGTTAGGGGAAGAAAAGAGTTATTATGTAACTCTAGGTGATGTGGTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGTTAGGGGAAGAAAAGAGTTATTATGTAACTCTAGGTGATGTGGTT  300

seq1  CCCCCAATCCCAATGCCAGATATGTCATAGTTCCTTGTAAGCCATTGTCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCCAATCCCAATGCCAGATATGTCATAGTTCCTTGTAAGCCATTGTCT  350

seq1  AAGGAGGCCCCAGAGAATCCCAGAATGACACAGGGCATTGCCATTTTTCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAGGCCCCAGAGAATCCCAGAATGACACAGGGCATTGCCATTTTTCT  400

seq1  TGGTTGTCCAAACAGACCTAGTTGGCAAGATGTTGTTGTAAATGACAACA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTGTCCAAACAGACCTAGTTGGCAAGATGTTGTTGTAAATGACAACA  450

seq1  TAGCCTGTGGGTAGAAGATACAGAGTAAATAAGCTATTTCTCTGGAAATT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCCTGTGGGTAGAAGATACAGAGTAAATAAGCTATTTCTCTGGAAATT  500

seq1  TCCTAGCTACTGGTTCTCTTTCCTAGTGCCAGTCAGTGCTATGTGTTGAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTAGCTACTGGTTCTCTTTCCTAGTGCCAGTCAGTGCTATGTGTTGAT  550

seq1  TGGGAAGAAGAGACATAAGCATTCTTTACTCAACTGTGAGCCCTCTGAAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGAAGAAGAGACATAAGCATTCTTTACTCAACTGTGAGCCCTCTGAAC  600

seq1  ACAAATACTACTTCACCAGAAAGATTCACTCACTCACTTTGTGCAAGAGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAATACTACTTCACCAGAAAGATTCACTCACTCACTTTGTGCAAGAGT  650

seq1  GACATGGCTGTTATGGAGATAAATACCTGCTCTCTCTGAATAGATTGGAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACATGGCTGTTATGGAGATAAATACCTGCTCTCTCTGAATAGATTGGAA  700

seq1  GTCCAGTCCAAAAAAAAAAAAAAAAAAAAAGGAATTCATGCCTTGTAATA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCAGTCCAAAAAAAAAAAAAAAAAAAAAGGAATTCATGCCTTGTAATA  750

seq1  TAAATCCGTTCAAAACTCTGTGAGCAAGAAGACCTCAGACTCTAGAGAAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATCCGTTCAAAACTCTGTGAGCAAGAAGACCTCAGACTCTAGAGAAG  800

seq1  AT  802
      ||
seq2  AT  802

seq1: chr10_104053903_104054363
seq2: B6Ng01-061E23.g_67_537 (reverse)

seq1  TTTAATAG----------CTCCATTGTGTAAATGTACCACATTTTCTGTA  40
      ||||||||          |||||||||||| |||||||||||||||||||
seq2  TTTAATAGCTGAGTAGTACTCCATTGTGTAGATGTACCACATTTTCTGTA  50

seq1  TCTATTCCTCTGTTGAGGGGCATCTGGGTTCTTTCCAGCTCCTGGCTATT  90
      || ||||||||||||||||||||||||||||||||||||| |||||||||
seq2  TCCATTCCTCTGTTGAGGGGCATCTGGGTTCTTTCCAGCTTCTGGCTATT  100

seq1  ATAAATAAGGCTGCTATGAATATAGTGGAGCATGTGTCCTTCTTACCGGT  140
      |||||||||||||||||||| |||||||||||||||||||||||||| ||
seq2  ATAAATAAGGCTGCTATGAACATAGTGGAGCATGTGTCCTTCTTACCAGT  150

seq1  TGGGGCATCTTCTGGATATATGCCCAGAAGAGGTATTGCTGGATCCTCCG  190
      ||||||||||||||||||||||||||  ||||||||||||||||||||||
seq2  TGGGGCATCTTCTGGATATATGCCCAAGAGAGGTATTGCTGGATCCTCCG  200

seq1  GTAGTACTATGTCCAATTTTCTGACGAACCGCCAGACGGATTTCCAGAGT  240
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  GTAGTACTATGTCCAATTTTCTGAGGAACCGCCAGACGGATTTCCAGAGT  250

seq1  GGTTGTACAAGCCTGCAATCCCACCAACAATGGAGGAGTGTTCCTCTTTC  290
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTGTACAAGCCTGCAATCCCACCAACAATGGAGGAGTGTTCCTCTTTC  300

seq1  TCCACATCCTCGCCAGCATCTGCTGTCACCTGAATTTTTGATCTTAGCCA  340
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  TCCACATCCTCGCCAGCATCTGCTGTCACCTGAATTTTTGATCTTAGACA  350

seq1  TTCTGACTGGTGTGAGGTGGAATCTCAGGGTTGTTTTGATTTGCATTTCC  390
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGACTGGTGTGAGGTGGAATCTCAGGGTTGTTTTGATTTGCATTTCC  400

seq1  CTGATGATTAAGGATGTTGAACATTTTTTCAGGTGCTTCTCTGCCATTCG  440
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATGATTAAGGATGTTGAACATTTTTTCAGGTGCTTCTCTGCCATTCG  450

seq1  GTATTCCTCAGGTGAGAATTC  461
      |||||||||||||||||||||
seq2  GTATTCCTCAGGTGAGAATTC  471