BAC Information

Click to search

BAC

Clone NameB6Ng01-063D08
Chromosome10 (Build37)
Map Location 93,531,171 - 93,679,027
singlet/doubletdoublet
Overlap geneFgd6, Nr2c1, Ndufa12
Upstream gene4930485B16Rik, EG667314, Pctk2, Elk3, LOC100041854, Lta4h, Hal, Amdhd1, Ccdc38, Snrpf, LOC100041873, Ntn4, LOC667338, LOC100041907, Usp44, Metap2, Vezt
Downstream geneEG215472, LOC100041955, Tmcc3, EG667315, 4921537D05Rik, Plxnc1, Cradd
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-063D08.bB6Ng01-063D08.g
ACCDH883371DH883372
length1,050826
definitionDH883371|Mus musculus domesticus DNA, BAC clone: B6Ng01-063D08, 5' end.DH883372|Mus musculus domesticus DNA, BAC clone: B6Ng01-063D08, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(93,677,967 - 93,679,027)(93,531,171 - 93,531,996)
sequence
gaattcttaagttatgcacgatgaagccactagactaaactctcactata
aattacaatatagatgatcacttgataaaccatttgccatattttaaggt
ttaaaagcaggttgtttggttaatttttaaaacaatccttagacagcatt
tataaatcatgggcattgttctaaacatttaaaaaaaacccacgaattca
ctggataattagttaattaattggagattatacctccactttgattagtg
ggagatctagagcacagacttgttacatggtttgtccagggcagcagagc
attatcatccagacagagtgattgtccaaacagggaaactcagttcctct
agcaccccccccccccccccgcagctcacatctgcctgtcaccccagcag
gagggatctgaccctttattctggcttctgtaggcaccatacacatggct
ggctatctggctgccaggcaaacacccacccacacccctaaaaatgacat
tttggacttggatttatgggtcagtggctaagagaactcattatttttga
agaggaagcaggtttggttcccagcgcccgtgtggtgggtttgacaccag
ttcaggtgatctgatgctctcttctggcctcagcaagcacctgtgtgcat
ctggagcacaaatgcacataaaaatgaataaaatttaaaatttaaatatg
ttaaagagtaaagccaaaaggttctatgtacatagcaaaggagatcagaa
tgacaggttatcaaaatatttattagttattgtttccatctggtgggaca
ataggctgtttatttcctttgttattttctgaagcaaacatattacttaa
taagaaaaaaaggagcatattaaaaagacataccgtttatcaaaccaatt
tgggaagtggtttataactcctacccaagtcttctgacatgactctgaaa
tataatagattctaatgacttcagctcatttcatctcactatgtacattt
aaacgcatcgctctttaaggacgcagatgttttagtgtagacagatagtt

gaattccaggacaaccagggctacacagagaaaccctgtctcaaaaaacc
aaaaaaaaaaaaaaaagaaaaaaaaaagaaaaaaaaagaaacatcagttt
ttggtatgctaataaactagattagacacctgctctattttattggtggc
agctttatgatcagtagaacggttttctgttggctttaacagaaaggttg
cagtctgcactgcaggaagtttattttaaggaatcattcctccaagcctt
ccaaacctggaaacatcaaggttgctgatatgaggtcgctattttagctc
agtacttgttttggtgtagacttttatagaattcttttcacttctaggct
agaaacagcagagacctgacctggctgcctcccagctaggctgggggtgg
ggagcaagatattggactgtgctcagcctggagttcctccaccatctact
gggggtgaaccggagccagaactggtccttatttacaggccagggagctc
cccaatgaggtagatggagcgtcatggagccgtcccacacagtctgctca
ccttggcgtaggcaggccaccagtttaatagttactctttggccccagct
actgacctctggtgctgtgttttttgaagccatcaactggctagcctttg
ttcttgagagttggtgatgtagctcagttgtacagtgcttgcctagcatg
tgtggcttgtccattactgagagacttaggccaaacaagccccctacaga
ccaaaggaaagacgcagtctatgtattctcgtattctgagagttaaaaga
tttctgtgcttgggttgtgtgtgtgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_93677967_93679027
seq2: B6Ng01-063D08.b_48_1097 (reverse)

seq1  AACTATCTGTCTACCACTAAAACATCTGCGTGCTTTAAAGGAAGCGATGC  50
      ||||||||||||| ||||||||||||||||| | ||||||  ||||||| 
seq2  AACTATCTGTCTA-CACTAAAACATCTGCGT-CCTTAAAG--AGCGATG-  45

seq1  CGTTTAAATGGTACCATAAGTGAGATGAAATGAGCTGGAAGTCATTAGAA  100
      ||||||||| ||| ||| |||||||||||||||||| |||||||||||||
seq2  CGTTTAAAT-GTA-CAT-AGTGAGATGAAATGAGCT-GAAGTCATTAGAA  91

seq1  TCTATTTATAATTTCAGAGTCATGTCAGAAGACTTGGGTAGGAGTTATAA  150
      |||| |||| ||||||||||||||||||||||||||||||||||||||||
seq2  TCTA-TTAT-ATTTCAGAGTCATGTCAGAAGACTTGGGTAGGAGTTATAA  139

seq1  ACCACTTCCCAAATTGGTTTGATAAACGGTATGTCTTTTTAATATGCTTC  200
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  ACCACTTCCCAAATTGGTTTGATAAACGGTATGTCTTTTTAATATGCTCC  189

seq1  TTTTTTTCTTATTAAGTAATATGTTTGCTTCAGAAAATAACAAAGGAAAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTCTTATTAAGTAATATGTTTGCTTCAGAAAATAACAAAGGAAAT  239

seq1  AAACAGCCTATTGTCCCACCAGATGGAAACAATAACTAAT-AATATTTTG  299
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  AAACAGCCTATTGTCCCACCAGATGGAAACAATAACTAATAAATATTTTG  289

seq1  ATAACCTGTCATTCTGATCTCCTTTGCTATGTACATAGAACCTTTTGGCT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAACCTGTCATTCTGATCTCCTTTGCTATGTACATAGAACCTTTTGGCT  339

seq1  TTACTCTTTAACATATTTAAATTTTAAATTTTATTCATTTTTATGTGCAT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTCTTTAACATATTTAAATTTTAAATTTTATTCATTTTTATGTGCAT  389

seq1  TTGTGCTCCAGATGCACACAGGTGCTTGCTGAGGCCAGAAGAGAGCATCA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGCTCCAGATGCACACAGGTGCTTGCTGAGGCCAGAAGAGAGCATCA  439

seq1  GATCACCTGAACTGGTGTCAAACCCACCACACGGGCGCTGGGAACCAAAC  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCACCTGAACTGGTGTCAAACCCACCACACGGGCGCTGGGAACCAAAC  489

seq1  CTGCTTCCTCTTCAAAAATAATGAGTTCTCTTAGCCACTGACCCATAAAT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTTCCTCTTCAAAAATAATGAGTTCTCTTAGCCACTGACCCATAAAT  539

seq1  CCAAGTCCAAAATGTCATTTTTAGGGGTGTGGGTGGGTGTTTGCCTGGCA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGTCCAAAATGTCATTTTTAGGGGTGTGGGTGGGTGTTTGCCTGGCA  589

seq1  GCCAGATAGCCAGCCATGTGTATGGTGCCTACAGAAGCCAGAATAAAGGG  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGATAGCCAGCCATGTGTATGGTGCCTACAGAAGCCAGAATAAAGGG  639

seq1  TCAGATCCCTCCTGCTGGGGTGACAGGCAGATGTGAGCTGCGGGGGGGGG  699
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  TCAGATCCCTCCTGCTGGGGTGACAGGCAGATGTGAGCTGC-GGGGGGGG  688

seq1  GGGGGGGGTGCTAGAGGAACTGAGTTTCCCTGTTTGGACAATCACTCTGT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGGGGGTGCTAGAGGAACTGAGTTTCCCTGTTTGGACAATCACTCTGT  738

seq1  CTGGATGATAATGCTCTGCTGCCCTGGACAAACCATGTAACAAGTCTGTG  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGATGATAATGCTCTGCTGCCCTGGACAAACCATGTAACAAGTCTGTG  788

seq1  CTCTAGATCTCCCACTAATCAAAGTGGAGGTATAATCTCCAATTAATTAA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTAGATCTCCCACTAATCAAAGTGGAGGTATAATCTCCAATTAATTAA  838

seq1  CTAATTATCCAGTGAATTCGTGGGTTTTTTTTAAATGTTTAGAACAATGC  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAATTATCCAGTGAATTCGTGGGTTTTTTTTAAATGTTTAGAACAATGC  888

seq1  CCATGATTTATAAATGCTGTCTAAGGATTGTTTTAAAAATTAACCAAACA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGATTTATAAATGCTGTCTAAGGATTGTTTTAAAAATTAACCAAACA  938

seq1  ACCTGCTTTTAAACCTTAAAATATGGCAAATGGTTTATCAAGTGATCATC  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGCTTTTAAACCTTAAAATATGGCAAATGGTTTATCAAGTGATCATC  988

seq1  TATATTGTAATTTATAGTGAGAGTTTAGTCTAGTGGCTTCATCGTGCATA  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATTGTAATTTATAGTGAGAGTTTAGTCTAGTGGCTTCATCGTGCATA  1038

seq1  ACTTAAGAATTC  1061
      ||||||||||||
seq2  ACTTAAGAATTC  1050

seq1: chr10_93531171_93531996
seq2: B6Ng01-063D08.g_68_893

seq1  GAATTCCAGGACAACCAGGGCTACACAGAGAAACCCTGTCTCAAAAAACC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGGACAACCAGGGCTACACAGAGAAACCCTGTCTCAAAAAACC  50

seq1  AAAAAAAAAAAAAAAAGAAAAAAAAAAGAAAAAAAAAGAAACATCAGTTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAAAAAAAAAAGAAAAAAAAAAGAAAAAAAAAGAAACATCAGTTT  100

seq1  TTGGTATGCTAATAAACTAGATTAGACACCTGCTCTATTTTATTGGTGGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTATGCTAATAAACTAGATTAGACACCTGCTCTATTTTATTGGTGGC  150

seq1  AGCTTTATGATCAGTAGAACGGTTTTCTGTTGGCTTTAACAGAAAGGTTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTTATGATCAGTAGAACGGTTTTCTGTTGGCTTTAACAGAAAGGTTG  200

seq1  CAGTCTGCACTGCAGGAAGTTTATTTTAAGGAATCATTCCTCCAAGCCTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTCTGCACTGCAGGAAGTTTATTTTAAGGAATCATTCCTCCAAGCCTT  250

seq1  CCAAACCTGGAAACATCAAGGTTGCTGATATGAGGTCGCTATTTTAGCTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAACCTGGAAACATCAAGGTTGCTGATATGAGGTCGCTATTTTAGCTC  300

seq1  AGTACTTGTTTTGGTGTAGACTTTTATAGAATTCTTTTCACTTCTAGGCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTACTTGTTTTGGTGTAGACTTTTATAGAATTCTTTTCACTTCTAGGCT  350

seq1  AGAAACAGCAGAGACCTGACCTGGCTGCCTCCCAGCTAGGCTGGGGGTGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAACAGCAGAGACCTGACCTGGCTGCCTCCCAGCTAGGCTGGGGGTGG  400

seq1  GGAGCAAGATATTGGACTGTGCTCAGCCTGGAGTTCCTCCACCATCTACT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGCAAGATATTGGACTGTGCTCAGCCTGGAGTTCCTCCACCATCTACT  450

seq1  GGGGGTGAACCGGAGCCAGAACTGGTCCTTATTTACAGGCCAGGGAGCTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGGTGAACCGGAGCCAGAACTGGTCCTTATTTACAGGCCAGGGAGCTC  500

seq1  CCCAATGAGGTAGATGGAGCGTCATGGAGCCGTCCCACACAGTCTGCTCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAATGAGGTAGATGGAGCGTCATGGAGCCGTCCCACACAGTCTGCTCA  550

seq1  CCTTGGCGTAGGCAGGCCACCAGTTTAATAGTTACTCTTTGGCCCCAGCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGGCGTAGGCAGGCCACCAGTTTAATAGTTACTCTTTGGCCCCAGCT  600

seq1  ACTGACCTCTGGTGCTGTGTTTTTTGAAGCCATCAACTGGCTAGCCTTTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGACCTCTGGTGCTGTGTTTTTTGAAGCCATCAACTGGCTAGCCTTTG  650

seq1  TTCTTGAGAGTTGGTGATGTAGCTCAGTTGTACAGTGCTTGCCTAGCATG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTGAGAGTTGGTGATGTAGCTCAGTTGTACAGTGCTTGCCTAGCATG  700

seq1  TGTGGCTTGTCCATTACTGAGAGACTTAGGCCAAACAAGCCCCCTACAGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGCTTGTCCATTACTGAGAGACTTAGGCCAAACAAGCCCCCTACAGA  750

seq1  CCAAAGGAAAGACGCAGTCTATGTATTCTCGTATTCTGAGAGTTAAAAGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAAGGAAAGACGCAGTCTATGTATTCTCGTATTCTGAGAGTTAAAAGA  800

seq1  TTTCTGTGCTTGGGGTGTGTGTGTGT  826
      |||||||||||||| |||||||||||
seq2  TTTCTGTGCTTGGGTTGTGTGTGTGT  826