BAC Information

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BAC

Clone NameB6Ng01-064C04
Chromosome10 (Build37)
Map Location 80,524,905 - 80,660,599
singlet/doubletdoublet
Overlap geneThop1, Creb3l3, Map2k2, Zbtb7a, Pias4, Eef2, Dapk3
Upstream geneSbno2, Stk11, Dos, Atp5d, Midn, Cirbp, 1600002K03Rik, Efna2, Mum1, Ndufs7, Gamt, Dazap1, Rps15, Apc2, 2310011J03Rik, Pcsk4, Reep6, Adamtsl5, 6330514A18Rik, Rkhd1, Mbd3, Uqcr, Tcfe2a, Onecut3, Atp8b3, Rexo1, Klf16, D10Bwg1364e, Scamp4, Csnk1g2, Btbd2, Mknk2, Mobkl2a, 9030607L17Rik, Ap3d1, Dot1l, Plekhj1, Sf3a2, Amh, Jsrp1, Oaz1, BC072620, Lsm7, 3110056O03Rik, Tmprss9, Timm13, Lmnb2, Gadd45b, Gng7, LOC100042403, Diras1, Slc39a3, Sgta
Downstream geneItgb1bp3, Atcay, 9130206N08Rik, Matk, Mrpl54, Apba3, Tjp3, Pip5k1c, 2510012J08Rik, Tbxa2r, Gipc3, Hmg20b, F630110N24Rik, 4930404N11Rik, Fzr1, Dohh, 2210404O07Rik, Nfic, Brunol5, Ncln, Edg6, Gna15, Gna11, Aes, Tle2, Tle6, BC025920, Sirt6, Ankrd24, LOC100040916, EG666448, EG666458, LOC666711, LOC382388, LOC100040944, EG210583, EG666738, EG666501, 1700123A16Rik, LOC666753, EG666537, BC062127, EG666542, EG666548, EG666790, LOC666571, AL117821, BC062115, 4933439G19Rik, BC024063, AU041133
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-064C04.bB6Ng01-064C04.g
ACCDH884015DH884016
length1,149904
definitionDH884015|Mus musculus domesticus DNA, BAC clone: B6Ng01-064C04, 5' end.DH884016|Mus musculus domesticus DNA, BAC clone: B6Ng01-064C04, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(80,659,432 - 80,660,599)(80,524,905 - 80,525,561)
sequence
gaattccactttctaacacttgagttttaccttcaaacttaagggtattt
tgttttgctttgggatggggctcctgtactcatttctatttctcttgtca
tgctgccccaatcaatattagtgagacctgccttctgcgtgacagatgtg
gggtgtccccacacccacaggtagcaatgcagacatctgtcatctcccca
gctgtagaagtcctgtgaccaacgtgaggagcttccctgtagggtcgcag
cgtcaaggttaagcagaggctgaaagcacaggactggaacagggtttatg
cttgccaaacccaggcctttgtcccaggcacaactgtggccagactcatc
tgctggtcacgtcccccaaaatagttcagcatgagacagggacataaggg
agatgacttcaaggcagccagagcctggccactcaggcaccgtagacatg
attcatagaataaagaatgaacttggggctggaaggatggctcagtggct
gctcttgcagaggacgggaatcagtctccaacaccctcagggtggctcac
atgcacttgtaattccagctccagaggacatctttccggcccctgtgggt
actgcacacatgtggtacacagacaaaaatgcaggcaaaatatctataca
cctaatgaaaaaaaaaagtaaaaaataaactgggggcagcaagagggccc
agtaggtaaaggagcttgctgccaagtctgatgacatgagttccatcttc
aaggcccttatgggagaagaaggaaaccattcctacaaggtatccactga
cctctacacatgtgctgtggcatgttcacgtgccccccccacacacacac
atgtacacacaatgtaatatgaacattttaaatgctggggaccagcatca
gagtcactggcttgcccagtctccccagaacatcccatgtcctcatgacc
ccaccctcggctcaccaggcggtgcactgtgtcgggatgggtttatgcgt
gtccagagcctgggatgctccaaagaggtaggtttctgaccgtgtcttct
gtcaggctaagcttgccaagaagccctgccttgggcctcctttgggtcta
gacagctggggaatacccctcgaggcttcagaggacaaaggttccaggg
gaattccagggcaattaccaactctttaagacttttcttctttccagggt
gaaaacatactgttttctagaaatcttgccaaaaattccctttacaggga
aagggtactgacataatgaaaccctcttacaacctgtgatttctgatctt
tatctcatcagattagttttaactatcgaattgacacaaccgagaatcgc
ttagcaagagtctccatgaagtgcctagatgaagttggtctgcttgtggg
ggtgaccttgattaaacataagtgacaccaggcttggtggcacaccttta
atcccagcgtttgggaggcagaggcacaaggacttctgagttcaaggcca
gcctggtctacaaagtgagttccaggacagccagggctatacatcgaaac
cctgtctcaggggaaaacaaaaaacaaaaaacaaaaaaccaaacataagt
gacatgagaaggccccgcccattgtgggtggcaccatccccaggaaaaga
gatgctgaaggaaaacaggctgggaaagacactgcgtttgtctctctgct
tttgactgtgtatccgtgtggcctgcttcggttttgactccctctccccc
ttgccccatgatggcctatctcaaatcaccttggcaaactctgcttcagg
aactggccactagtgttcttgtgcattatataaacttttactctttgtgt
tactcaaatgctgatctctgctctcttatcttgtttcaatcttgggacag
ggcattgtatgcttataccaagaatatcctgtctcaagtttgtgtaaaca
gttcttcccatctattctctgccttgtcaataaatgctgatcacccaatg
gctgggcagaagagaaaatagggtgggacttcggccagccagagaaggag
agga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_80659432_80660599
seq2: B6Ng01-064C04.b_47_1195 (reverse)

seq1  CCCTGGAACCTTCTGTCCCTCTGGAAAGGCTTCGAGGGGCTTTCCCCAGC  50
      |||||||||||| ||| ||||||   | || ||||||||  |||||||||
seq2  CCCTGGAACCTT-TGT-CCTCTG---AAGCCTCGAGGGGTATTCCCCAGC  45

seq1  ATGCTAGGACCCAAAGGAGGCCCCAAGGGCAGGGCTTCTTGGCAAGGCTC  100
         ||| ||||||||||||||||  | |||||||||||||||||| ||| 
seq2  TGTCTA-GACCCAAAGGAGGCCC--AAGGCAGGGCTTCTTGGCAA-GCTT  91

seq1  TGCTTGACAGACAGAACACGGGTCAGAAACCTACCTCTTCTGAGTCATCC  150
       || ||||||| || |||| |||||||||||||||||||  ||| |||||
seq2  AGCCTGACAGA-AG-ACAC-GGTCAGAAACCTACCTCTTTGGAG-CATCC  137

seq1  CAGGCCTCTGGAACACGCAATAAACCCATCCCGACACAGGTGCACCCGCC  200
      |||| |||||| |||||| ||||||||||||||||||| ||||| |||||
seq2  CAGG-CTCTGG-ACACGC-ATAAACCCATCCCGACACA-GTGCA-CCGCC  182

seq1  TGGTGAGCCGAGGGTGGGGTCCCTGAGGACATGGGATGTTCTGGGGAGAC  250
      |||||||||||||||||||| | |||||||||||||||||||||||||||
seq2  TGGTGAGCCGAGGGTGGGGT-CATGAGGACATGGGATGTTCTGGGGAGAC  231

seq1  TGGGCAAGCCAGTGACTCTGATGCTGGT-CCCAGCATTTAAAATGTTCAT  299
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  TGGGCAAGCCAGTGACTCTGATGCTGGTCCCCAGCATTTAAAATGTTCAT  281

seq1  ATTACATTGGTGTGTACATGTGTGTGTGTGGGGGGGGCACGTGAACATGC  349
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  ATTACATT-GTGTGTACATGTGTGTGTGTGGGGGGGGCACGTGAACATGC  330

seq1  CACAGCACATGTGTAGAGGTCAGTGGATACCTTGTAGGAATGGTTTCCTT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGCACATGTGTAGAGGTCAGTGGATACCTTGTAGGAATGGTTTCCTT  380

seq1  CTTCTCCCATAAGGGCCTTGAAGATGGAACTCATGTCATCAGACTTGGCA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTCCCATAAGGGCCTTGAAGATGGAACTCATGTCATCAGACTTGGCA  430

seq1  GCAAGCTCCTTTACCTACTGGGCCCTCTTGCTGCCCCCAGTTTATTTTTT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAGCTCCTTTACCTACTGGGCCCTCTTGCTGCCCCCAGTTTATTTTTT  480

seq1  ACTTTTTTTTTTCATTAGGTGTATAGATATTTTGCCTGCATTTTTGTCTG  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTTTTTTTTCATTAGGTGTATAGATATTTTGCCTGCATTTTTGTCTG  530

seq1  TGTACCACATGTGTGCAGTACCCACAGGGGCCGGAAAGATGTCCTCTGGA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTACCACATGTGTGCAGTACCCACAGGGGCCGGAAAGATGTCCTCTGGA  580

seq1  GCTGGAATTACAAGTGCATGTGAGCCACCCTGAGGGTGTTGGAGACTGAT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGAATTACAAGTGCATGTGAGCCACCCTGAGGGTGTTGGAGACTGAT  630

seq1  TCCCGTCCTCTGCAAGAGCAGCCACTGAGCCATCCTTCCAGCCCCAAGTT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCGTCCTCTGCAAGAGCAGCCACTGAGCCATCCTTCCAGCCCCAAGTT  680

seq1  CATTCTTTATTCTATGAATCATGTCTACGGTGCCTGAGTGGCCAGGCTCT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCTTTATTCTATGAATCATGTCTACGGTGCCTGAGTGGCCAGGCTCT  730

seq1  GGCTGCCTTGAAGTCATCTCCCTTATGTCCCTGTCTCATGCTGAACTATT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGCCTTGAAGTCATCTCCCTTATGTCCCTGTCTCATGCTGAACTATT  780

seq1  TTGGGGGACGTGACCAGCAGATGAGTCTGGCCACAGTTGTGCCTGGGACA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGGGACGTGACCAGCAGATGAGTCTGGCCACAGTTGTGCCTGGGACA  830

seq1  AAGGCCTGGGTTTGGCAAGCATAAACCCTGTTCCAGTCCTGTGCTTTCAG  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCCTGGGTTTGGCAAGCATAAACCCTGTTCCAGTCCTGTGCTTTCAG  880

seq1  CCTCTGCTTAACCTTGACGCTGCGACCCTACAGGGAAGCTCCTCACGTTG  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTGCTTAACCTTGACGCTGCGACCCTACAGGGAAGCTCCTCACGTTG  930

seq1  GTCACAGGACTTCTACAGCTGGGGAGATGACAGATGTCTGCATTGCTACC  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCACAGGACTTCTACAGCTGGGGAGATGACAGATGTCTGCATTGCTACC  980

seq1  TGTGGGTGTGGGGACACCCCACATCTGTCACGCAGAAGGCAGGTCTCACT  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGGTGTGGGGACACCCCACATCTGTCACGCAGAAGGCAGGTCTCACT  1030

seq1  AATATTGATTGGGGCAGCATGACAAGAGAAATAGAAATGAGTACAGGAGC  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATTGATTGGGGCAGCATGACAAGAGAAATAGAAATGAGTACAGGAGC  1080

seq1  CCCATCCCAAAGCAAAACAAAATACCCTTAAGTTTGAAGGTAAAACTCAA  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCATCCCAAAGCAAAACAAAATACCCTTAAGTTTGAAGGTAAAACTCAA  1130

seq1  GTGTTAGAAAGTGGAATTC  1168
      |||||||||||||||||||
seq2  GTGTTAGAAAGTGGAATTC  1149

seq1: chr10_80524905_80525561
seq2: B6Ng01-064C04.g_68_724

seq1  GAATTCCAGGGCAATTACCAACTCTTTAAGACTTTTCTTCTTTCCAGGGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGGGCAATTACCAACTCTTTAAGACTTTTCTTCTTTCCAGGGT  50

seq1  GAAAACATACTGTTTTCTAGAAATCTTGCCAAAAATTCCCTTTACAGGGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAACATACTGTTTTCTAGAAATCTTGCCAAAAATTCCCTTTACAGGGA  100

seq1  AAGGGTACTGACATAATGAAACCCTCTTACAACCTGTGATTTCTGATCTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGGTACTGACATAATGAAACCCTCTTACAACCTGTGATTTCTGATCTT  150

seq1  TATCTCATCAGATTAGTTTTAACTATCGAATTGACACAACCGAGAATCGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTCATCAGATTAGTTTTAACTATCGAATTGACACAACCGAGAATCGC  200

seq1  TTAGCAAGAGTCTCCATGAAGTGCCTAGATGAAGTTGGTCTGCTTGTGGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGCAAGAGTCTCCATGAAGTGCCTAGATGAAGTTGGTCTGCTTGTGGG  250

seq1  GGTGACCTTGATTAAACATAAGTGACACCAGGCTTGGTGGCACACCTTTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGACCTTGATTAAACATAAGTGACACCAGGCTTGGTGGCACACCTTTA  300

seq1  ATCCCAGCGTTTGGGAGGCAGAGGCACAAGGACTTCTGAGTTCAAGGCCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCCAGCGTTTGGGAGGCAGAGGCACAAGGACTTCTGAGTTCAAGGCCA  350

seq1  GCCTGGTCTACAAAGTGAGTTCCAGGACAGCCAGGGCTATACATCGAAAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGGTCTACAAAGTGAGTTCCAGGACAGCCAGGGCTATACATCGAAAC  400

seq1  CCTGTCTCAGGGGAAAACAAAAAACAAAAAACAAAAAACCAAACATAAGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTCTCAGGGGAAAACAAAAAACAAAAAACAAAAAACCAAACATAAGT  450

seq1  GACATGAGAAGGCCCCGCCCATTGTGGGTGGCACCATCCCCAGGAAAAGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACATGAGAAGGCCCCGCCCATTGTGGGTGGCACCATCCCCAGGAAAAGA  500

seq1  GATGCTGAAGGAAAACAGGCTGGGAAAGACACTGCGTTTGTCTCTCTGCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGCTGAAGGAAAACAGGCTGGGAAAGACACTGCGTTTGTCTCTCTGCT  550

seq1  TTTGACTGTGTATCCGTGTGGCCTGCTTCGGTTTTGACTCCCTCTCCCCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGACTGTGTATCCGTGTGGCCTGCTTCGGTTTTGACTCCCTCTCCCCC  600

seq1  TTGCCCCATGATGGCCTATCTCAAATCACCTTGGCAAACTCTGCTTCAGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCCCCATGATGGCCTATCTCAAATCACCTTGGCAAACTCTGCTTCAGG  650

seq1  AACTGGC  657
      |||||||
seq2  AACTGGC  657