BAC Information

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BAC

Clone NameB6Ng01-064C19
Chromosome10 (Build37)10 (Build37)
Map Location 104,053,903 - 104,054,36316,207,326 - 16,208,416
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneEG627488, EG667692, EG667695, LOC100043292
Downstream geneLOC100042383, Tmtc2, EG627573
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-064C19.bB6Ng01-064C19.g
ACCDH884041DH884042
length9641,075
definitionDH884041|Mus musculus domesticus DNA, BAC clone: B6Ng01-064C19, 5' end.DH884042|Mus musculus domesticus DNA, BAC clone: B6Ng01-064C19, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(104,053,903 - 104,054,363)(16,207,326 - 16,208,416)
sequence
gaattctcacctgagaaataccaaatggctaagaagcacctgaaaaaatg
ttcagcatccttaatcatcagggaaatgcaaatcaaaaaatcctgagatt
ccacctcacaccagtcagaatagctaagatcaaaaattcaggtgacatca
gatgctggcgaggatgtggagaaagaggaacactcctccattgttggtgg
gattgcaagcttgtacaaccactctggaaatcagtcttgcggttcctcag
aaaattggacatagtactaccagaggatcccacaatacctctcctgggca
tatatccagaagatgccccaactggtaagaaggacacatgctccactatg
ttcatagcagccttatttataatagccagaagcaggaaagaacccagatg
tccctcaacagaggaatggatacagaaaatgtggtacatttacacaatgg
agtactactcagctattaaaaagaatgaatttattaaattcctaggtaaa
tggatggacctggaggacatcatcctgagtgaggtaacccaatcgcaaaa
gaactcacatgacatgtactcactgataagtgaatattagcccagaaact
tagaataaccaagatatatgatacaatttgcgaaacacatgaaactcaag
aagaacgaagaccagtgtggacattgtgccccttcttagaactgggaaca
aaacacccatggaacgagttacagagacaaagtttggagctgagacaaaa
ggatggaccatctagagactgccatatctggggatccatcccataatcag
cttccaaacgctgacaccattgcatacatttagcaagattttgctgaaag
gacccagatatagctgtctcttgtgagactatgccggggcctagccaata
cagaagtggatgctcacaatcagctattggatggatcatagggcccaaat
ggaggagctagaga
gaattctattgaattttctggtttgttattttttaaattctgttgtgtgt
cttggtatttcttttctttctttttttttttttgctgttgtagtattgtc
tcttaaggatctaatcttaactttaacatgaaaatatactaggatttttc
ttgcattaaaaacaaaaagaaacctttataatactttttgtattcgcgta
ggaggacagagtactggaggtgtgatgtaacagaatccttgggatattta
taaagggagaataattagacttcatttctgagggtattttcttgatcttt
ataaatctctgcattgagatttattctacatgcaaatacctgcactacct
atattattaatattttatcattatactttttattttagatcagccttcaa
taacttccaattatgtaatttaatgacatgaaaataatttttaggtaaac
tgaaagtttaaactatataccttttaagagatttaacactctgatttgtg
ttagatatttctcccatctcagtgagttccctgaataatattctaaaata
gaaacagatattatgaaacaagcagaaactgcataaattggccttgaact
ttattgatcattaagaagagagcagagatctcagcaatattatttttgta
ctccttttcattggttgaatatttgcctcataattatttaaatcgtatca
cactctattagtaaacacaatatctaattgtttttcattgtaagttataa
gctatttgggtgtgccatgtgttagacatgattaactattttgcaatgta
ctcgaacaaatattttgcataaatctatatctcctataatagctaatatt
tcctcacaacaacttctgcatacttatatttattaaaccaataaatagca
ttgtgtttcaagtgctggtttagacagatctagaaatctaatgaatagaa
aagaacagcattttatctatactaatatagtgcttactatgttgggttat
tgacatgtcgagatttatgggataaagaaaccagtgtttgttttttgttt
gttggttttaaccatttggaaaaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_104053903_104054363
seq2: B6Ng01-064C19.b_48_517 (reverse)

seq1  TTTAATAG----------CTCCATTGTGTAAATGTACCACATTTTCTGTA  40
      ||||||||          ||||||||||||||||||||||||||||||||
seq2  TTTAATAGCTGAGTAGTACTCCATTGTGTAAATGTACCACATTTTCTGTA  50

seq1  TCTATTCCTCTGTTGAGGGGCATCTGGGTTCTTTCCAGCTCCTGGCTATT  90
      || |||||||||||||||| |||||||||||||||| ||| |||||||||
seq2  TCCATTCCTCTGTTGAGGGACATCTGGGTTCTTTCCTGCTTCTGGCTATT  100

seq1  ATAAATAAGGCTGCTATGAATATAGTGGAGCATGTGTCCTTCTTACCGGT  140
      |||||||||||||||||||| |||||||||||||||||||||||||| ||
seq2  ATAAATAAGGCTGCTATGAACATAGTGGAGCATGTGTCCTTCTTACCAGT  150

seq1  TGGGGCATCTTCTGGATATATGCCCAGAAGAGGTATTGCTGGATCCTCCG  190
      ||||||||||||||||||||||||||| ||||||||||  |||||||| |
seq2  TGGGGCATCTTCTGGATATATGCCCAGGAGAGGTATTGTGGGATCCTCTG  200

seq1  GTAGTACTATGTCCAATTTTCTGACGAACCGCCAGACGGATTTCCAGAGT  240
      |||||||||||||||||||||||| ||||||| |||| ||||||||||||
seq2  GTAGTACTATGTCCAATTTTCTGAGGAACCGCAAGACTGATTTCCAGAGT  250

seq1  GGTTGTACAAGCCTGCAATCCCACCAACAATGGAGGAGTGTTCCTCTTTC  290
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  GGTTGTACAAGCTTGCAATCCCACCAACAATGGAGGAGTGTTCCTCTTTC  300

seq1  TCCACATCCTCGCCAGCATCTGCTGTCACCTGAATTTTTGATCTTAGCCA  340
      |||||||||||||||||||||| ||||||||||||||||||||||||| |
seq2  TCCACATCCTCGCCAGCATCTGATGTCACCTGAATTTTTGATCTTAGCTA  350

seq1  TTCTGACTGGTGTGAGGTGGAATCTCAGGGTTGTTTTGATTTGCATTTCC  390
      ||||||||||||||||||||||||||||| || |||||||||||||||||
seq2  TTCTGACTGGTGTGAGGTGGAATCTCAGGATT-TTTTGATTTGCATTTCC  399

seq1  CTGATGATTAAGGATGTTGAACATTTTTTCAGGTGCTTCTCTGCCATTCG  440
      |||||||||||||||| |||||||||||||||||||||||  |||||| |
seq2  CTGATGATTAAGGATGCTGAACATTTTTTCAGGTGCTTCTTAGCCATTTG  449

seq1  GTATTCCTCAGGTGAGAATTC  461
      ||||| |||||||||||||||
seq2  GTATTTCTCAGGTGAGAATTC  470

seq1: chr10_16207326_16208416
seq2: B6Ng01-064C19.g_70_1144 (reverse)

seq1  TTTTTTCCAAATTGGGTAAAAAAACCAAACAAACAAAAAAAACAAACAAA  50
      ||||||||||||  ||| ||||   | |||||||  |||||||||||  |
seq2  TTTTTTCCAAAT--GGTTAAAA---CCAACAAAC--AAAAAACAAAC--A  41

seq1  CTGGGTTTTCTTTATCCCATAAATCTCTGACAATTGTCAATAACACAACA  100
      ||||  ||||||||||||||||||||| ||||  |||||||||| |||||
seq2  CTGG--TTTCTTTATCCCATAAATCTC-GACA--TGTCAATAACCCAACA  86

seq1  TATGTAAGCACTATATTAAGTATAGATAAAATGCTGTGTCTTTTCTATTC  150
      || |||||||||||||| ||||||||||||||||||| ||||||||||||
seq2  TA-GTAAGCACTATATT-AGTATAGATAAAATGCTGT-TCTTTTCTATTC  133

seq1  ATTAGATTTTCTAAGATCTGTCTAAACCAGCACTTGAAACACAATGCTAT  200
      |||||| ||||| |||||||||||||||||||||||||||||||||||||
seq2  ATTAGA-TTTCT-AGATCTGTCTAAACCAGCACTTGAAACACAATGCTAT  181

seq1  TTATTGGTTTAATAAATATAAGTATGCAGAAGTTGTTGTGAGGAAATA-T  249
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  TTATTGGTTTAATAAATATAAGTATGCAGAAGTTGTTGTGAGGAAATATT  231

seq1  AGCTATTATAGGAGATATAGATTTATGC-AAATATTTGTTCGAGTACATT  298
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  AGCTATTATAGGAGATATAGATTTATGCAAAATATTTGTTCGAGTACATT  281

seq1  GCAAAATAGTTAATCATGTCTAACACATGGCACA-CCAAATAGCTTATAA  347
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  GCAAAATAGTTAATCATGTCTAACACATGGCACACCCAAATAGCTTATAA  331

seq1  CTTACAATGAAAAACAATTAGATATTGTGTTTACTAATAGAGTGTGATAC  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTACAATGAAAAACAATTAGATATTGTGTTTACTAATAGAGTGTGATAC  381

seq1  GATTTAAATAATTATGAGGCAAATATTCAACCAATGAAAAGGAGTACAAA  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTAAATAATTATGAGGCAAATATTCAACCAATGAAAAGGAGTACAAA  431

seq1  AATAATATTGCTGAGATCTCTGCTCTCTTCTTAATGATCAATAAAGTTCA  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAATATTGCTGAGATCTCTGCTCTCTTCTTAATGATCAATAAAGTTCA  481

seq1  AGGCCAATTTATGCAGTTTCTGCTTGTTTCATAATATCTGTTTCTATTTT  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCCAATTTATGCAGTTTCTGCTTGTTTCATAATATCTGTTTCTATTTT  531

seq1  AGAATATTATTCAGGGAACTCACTGAGATGGGAGAAATATCTAACACAAA  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATATTATTCAGGGAACTCACTGAGATGGGAGAAATATCTAACACAAA  581

seq1  TCAGAGTGTTAAATCTCTTAAAAGGTATATAGTTTAAACTTTCAGTTTAC  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGAGTGTTAAATCTCTTAAAAGGTATATAGTTTAAACTTTCAGTTTAC  631

seq1  CTAAAAATTATTTTCATGTCATTAAATTACATAATTGGAAGTTATTGAAG  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAAAATTATTTTCATGTCATTAAATTACATAATTGGAAGTTATTGAAG  681

seq1  GCTGATCTAAAATAAAAAGTATAATGATAAAATATTAATAATATAGGTAG  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGATCTAAAATAAAAAGTATAATGATAAAATATTAATAATATAGGTAG  731

seq1  TGCAGGTATTTGCATGTAGAATAAATCTCAATGCAGAGATTTATAAAGAT  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGGTATTTGCATGTAGAATAAATCTCAATGCAGAGATTTATAAAGAT  781

seq1  CAAGAAAATACCCTCAGAAATGAAGTCTAATTATTCTCCCTTTATAAATA  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGAAAATACCCTCAGAAATGAAGTCTAATTATTCTCCCTTTATAAATA  831

seq1  TCCCAAGGATTCTGTTACATCACACCTCCAGTACTCTGTCCTCCTACGCG  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCAAGGATTCTGTTACATCACACCTCCAGTACTCTGTCCTCCTACGCG  881

seq1  AATACAAAAAGTATTATAAAGGTTTCTTTTTGTTTTTAATGCAAGAAAAA  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATACAAAAAGTATTATAAAGGTTTCTTTTTGTTTTTAATGCAAGAAAAA  931

seq1  TCCTAGTATATTTTCATGTTAAAGTTAAGATTAGATCCTTAAGAGACAAT  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTAGTATATTTTCATGTTAAAGTTAAGATTAGATCCTTAAGAGACAAT  981

seq1  ACTACAACAGCAAAAAAAAAAAAAGAAAGAAAAGAAATACCAAGACACAC  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTACAACAGCAAAAAAAAAAAAAGAAAGAAAAGAAATACCAAGACACAC  1031

seq1  AACAGAATTTAAAAAATAACAAACCAGAAAATTCAATAGAATTC  1091
      ||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGAATTTAAAAAATAACAAACCAGAAAATTCAATAGAATTC  1075