BAC Information

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BAC

Clone NameB6Ng01-064F16
Chromosome10 (Build37)
Map Location 18,291,077 - 18,371,154
singlet/doubletdoublet
Overlap geneD10Bwg1379e
Upstream geneCited2, Txlnb, LOC665321, Heca, 3110003A17Rik, Reps1, LOC100039660, Ccdc28a, LOC627646, Nhsl1, Hebp2, EG627729
Downstream geneEG237300, Perp, Tnfaip3, Tpi-rs5, EG637620, Olig3, Ifngr1, Il22ra2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-064F16.bB6Ng01-064F16.g
ACCDH884167DH884168
length1,1171,013
definitionDH884167|Mus musculus domesticus DNA, BAC clone: B6Ng01-064F16, 5' end.DH884168|Mus musculus domesticus DNA, BAC clone: B6Ng01-064F16, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(18,370,001 - 18,371,154)(18,291,077 - 18,292,092)
sequence
gaattccagccaagttggtctagaaaacagtgcctctgccttatagggca
aaactgtcaatttggaagagatggttccctagacaccagaaatgctcagg
ggctttgcacacaaagaaaaccactgtccctaggatgtttgcttgccttg
ctgtttattattcccctgtacatccgtgtcatatgcaacatatggctatt
tgtcaaagacatgtagcacaccaaaggctctgaggtttggtgccggatac
aacaagaagacaaaaagatattatctttctttgagtgtttattgggaggg
ggtctttcagaagatctctgtccccttccactttagattcagaagcattt
aacaagtacatgacaaattaaggcattcaagtacattatgaattagagga
taaggtgggcttccaagagaagctgaggttttggagtcctatctttaggg
ttagtggcacagcttagtataacagaacatgctggacatgcatgaggcta
tgccaacaccaaagagaaacaaaatccccacccctcagggacatattcat
cccttcaaaaaagtggaagaaggaaaagagattccctttacatgtagctg
tttccaagtaatatttctgttcatacctaggcttatacctcactgtaaat
attaagggtcaaaacaatgggatttatgttctatacaacttcattaatta
atttttaatttaacttccaaatgatactttctataaatatgtgtagcata
tggaagcataaatccattggaaatgaacaatttccaacaagaatgttaaa
tatgaaaacttgtgggaaggcagcccttgcagagcataagtttgttaaag
tagaaacctaaataaacatcccatctctccaacctctttctctgtgaaaa
cagaggagatagatttgaaatagcagaagaatagagtctagcaaaagtgt
gtgagacctctccttataccatgatacccgggctcatcaatggggaggtg
atagagggctgctctgccttatagagaagtcatgtctgggtaacaacaca
acagccgcaggcgacaacaatccaacaacaacgacttgcactcaacgggg
tcagaatactcctggct
ttaattcagggtggtctgataagatacaaggagttattctaattttcttg
tatttgttggggctgtgctgtgagattaggaggtggagagaattggtttc
ttatcagagctgcaggttttgctcaagtctcctgggtttgggaataagac
aaaaggtattaaattggcacgcataattctggggttcatggcatgagctg
ggacaccactaagttcccaaagctgacccagacaaaagctaggtggcagg
gatttaccagctcatctcaaaggcttctctaccttggagaatttgagctc
agaggtgctgggagcccctgctgtgcaaagagacaagcggctcagaaagc
aaagcggcagatggtagtggctgcttacctcctacaatcagataagtaaa
gaatagagagaaatgaggtttgtttaagtgtttaaacaaattaggcttga
actcactattaaaaatgaatttgaaaatttccaaatggaaaacacatgct
gcgacataaaattaggaggtggggagaattggtcttttagcagagttgct
cggtttttgtctagggcatgtgggtttgagacaaggacaaagggtgtgct
aaattggcactcctaattctggggttcttggtttaaggccgagatatgcc
cagactaacccagggacatgggggcaggctaaaggttcaggcagaggatc
tgtcctgttctgggctgctgcagagagcttaagccattgatgctgagagc
tcttgctgagaagggaggctgaagacagcagcttgaataagatgggaata
aaggaagttgcgttggtttagttgggaaggataagcctgagataggctca
tacagaaatatagaagggaatttaattgaagctaattatacaggaaagga
tgttaattcaggttatataattaaaggggaaatttatatatatccacaga
tactatcctcgttacaagggagaaggataaagggaaattgcattggttta
aggtatgaaggga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_18370001_18371154
seq2: B6Ng01-064F16.b_49_1165 (reverse)

seq1  AGCCAGGAGATATTTCTGAAGACAACGTTTTGAAGGTTGTTTAAAAGTCT  50
      ||||||||| || ||||||   |            ||||  |  ||||| 
seq2  AGCCAGGAG-TA-TTCTGACCCC------------GTTGAGTGCAAGTC-  35

seq1  GTTGTTGTTGTGATTGTTGTCGCTGCTGCTGTTGTTGTTGTTGTAACCCA  100
      |||||||||| ||||||||||||  |||| | ||||| |||||| |||||
seq2  GTTGTTGTTG-GATTGTTGTCGC--CTGCGGCTGTTG-TGTTGTTACCCA  81

seq1  GACATGACTTCTCTATAGGGGCAGAGGCAGCCCTTCTATCACCTCCCCAT  150
      |||||||||||||||||  |||||| ||||||| ||||||||||||||| 
seq2  GACATGACTTCTCTATA-AGGCAGA-GCAGCCC-TCTATCACCTCCCCA-  127

seq1  TTGATGAGCCCGGGTTATCATGGGTTATAAGGAGAGGTCTCACACCACTT  200
      |||||||||||||| ||||||||  ||||||||||||||||||| ||| |
seq2  TTGATGAGCCCGGG-TATCATGG--TATAAGGAGAGGTCTCACA-CAC-T  172

seq1  TTTGCTTAGACTCTTATTTCTTTCTGCTATTTCAAATCTATTCTCCTCTG  250
      ||||| ||||||| ||||   ||||||||||||||||||| |||||||||
seq2  TTTGC-TAGACTC-TATT--CTTCTGCTATTTCAAATCTA-TCTCCTCTG  217

seq1  TTTTCCAACAGAGAAAGAGGTTGGAGAGATGGGATGTTTATTTTAGGTTT  300
      |||||  ||||||||||||||||||||||||||||||||| |||||| ||
seq2  TTTTC--ACAGAGAAAGAGGTTGGAGAGATGGGATGTTTA-TTTAGG-TT  263

seq1  TCTACTTTAACAAACTTATGCTCTGCAAGGGCTGCCTTCCCACAAGTTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTACTTTAACAAACTTATGCTCTGCAAGGGCTGCCTTCCCACAAGTTTT  313

seq1  CATATTTAACATTCTTGTTGGAAATTGTTCATTTCCAATGGATTTATGCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATTTAACATTCTTGTTGGAAATTGTTCATTTCCAATGGATTTATGCT  363

seq1  TCCATATGCTACACATATTTATAGAAAGTATCATTTGGAAGTTAAATTAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATATGCTACACATATTTATAGAAAGTATCATTTGGAAGTTAAATTAA  413

seq1  AAATTAATTAATGAAGTTGTATAGAACATAAATCCCATTGTTTTGACCCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTAATTAATGAAGTTGTATAGAACATAAATCCCATTGTTTTGACCCT  463

seq1  TAATATTTACAGTGAGGTATAAGCCTAGGTATGAACAGAAATATTACTTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATATTTACAGTGAGGTATAAGCCTAGGTATGAACAGAAATATTACTTG  513

seq1  GAAACAGCTACATGTAAAGGGAATCTCTTTTCCTTCTTCCACTTTTTTGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACAGCTACATGTAAAGGGAATCTCTTTTCCTTCTTCCACTTTTTTGA  563

seq1  AGGGATGAATATGTCCCTGAGGGGTGGGGATTTTGTTTCTCTTTGGTGTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGATGAATATGTCCCTGAGGGGTGGGGATTTTGTTTCTCTTTGGTGTT  613

seq1  GGCATAGCCTCATGCATGTCCAGCATGTTCTGTTATACTAAGCTGTGCCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCATAGCCTCATGCATGTCCAGCATGTTCTGTTATACTAAGCTGTGCCA  663

seq1  CTAACCCTAAAGATAGGACTCCAAAACCTCAGCTTCTCTTGGAAGCCCAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAACCCTAAAGATAGGACTCCAAAACCTCAGCTTCTCTTGGAAGCCCAC  713

seq1  CTTATCCTCTAATTCATAATGTACTTGAATGCCTTAATTTGTCATGTACT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATCCTCTAATTCATAATGTACTTGAATGCCTTAATTTGTCATGTACT  763

seq1  TGTTAAATGCTTCTGAATCTAAAGTGGAAGGGGACAGAGATCTTCTGAAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTAAATGCTTCTGAATCTAAAGTGGAAGGGGACAGAGATCTTCTGAAA  813

seq1  GACCCCCTCCCAATAAACACTCAAAGAAAGATAATATCTTTTTGTCTTCT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCCCCTCCCAATAAACACTCAAAGAAAGATAATATCTTTTTGTCTTCT  863

seq1  TGTTGTATCCGGCACCAAACCTCAGAGCCTTTGGTGTGCTACATGTCTTT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGTATCCGGCACCAAACCTCAGAGCCTTTGGTGTGCTACATGTCTTT  913

seq1  GACAAATAGCCATATGTTGCATATGACACGGATGTACAGGGGAATAATAA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAAATAGCCATATGTTGCATATGACACGGATGTACAGGGGAATAATAA  963

seq1  ACAGCAAGGCAAGCAAACATCCTAGGGACAGTGGTTTTCTTTGTGTGCAA  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCAAGGCAAGCAAACATCCTAGGGACAGTGGTTTTCTTTGTGTGCAA  1013

seq1  AGCCCCTGAGCATTTCTGGTGTCTAGGGAACCATCTCTTCCAAATTGACA  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCCCTGAGCATTTCTGGTGTCTAGGGAACCATCTCTTCCAAATTGACA  1063

seq1  GTTTTGCCCTATAAGGCAGAGGCACTGTTTTCTAGACCAACTTGGCTGGA  1150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTGCCCTATAAGGCAGAGGCACTGTTTTCTAGACCAACTTGGCTGGA  1113

seq1  ATTC  1154
      ||||
seq2  ATTC  1117

seq1: chr10_18291077_18292092
seq2: B6Ng01-064F16.g_78_1090

seq1  TTAATTCAGGGTGGTCTGATAAGATACAAGGAGTTATTCTAATTTTCTTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATTCAGGGTGGTCTGATAAGATACAAGGAGTTATTCTAATTTTCTTG  50

seq1  TATTTGTTGGGGCTGTGCTGTGAGATTAGGAGGTGGAGAGAATTGGTTTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTGTTGGGGCTGTGCTGTGAGATTAGGAGGTGGAGAGAATTGGTTTC  100

seq1  TTATCAGAGCTGCAGGTTTTGCTCAAGTCTCCTGGGTTTGGGAATAAGAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATCAGAGCTGCAGGTTTTGCTCAAGTCTCCTGGGTTTGGGAATAAGAC  150

seq1  AAAAGGTATTAAATTGGCACGCATAATTCTGGGGTTCATGGCATGAGCTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGGTATTAAATTGGCACGCATAATTCTGGGGTTCATGGCATGAGCTG  200

seq1  GGACACCACTAAGTTCCCAAAGCTGACCCAGACAAAAGCTAGGTGGCAGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACACCACTAAGTTCCCAAAGCTGACCCAGACAAAAGCTAGGTGGCAGG  250

seq1  GATTTACCAGCTCATCTCAAAGGCTTCTCTACCTTGGAGAATTTGAGCTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTACCAGCTCATCTCAAAGGCTTCTCTACCTTGGAGAATTTGAGCTC  300

seq1  AGAGGTGCTGGGAGCCCCTGCTGTGCAAAGAGACAAGCGGCTCAGAAAGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGTGCTGGGAGCCCCTGCTGTGCAAAGAGACAAGCGGCTCAGAAAGC  350

seq1  AAAGCGGCAGATGGTAGTGGCTGCTTACCTCCTACAATCAGATAAGTAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCGGCAGATGGTAGTGGCTGCTTACCTCCTACAATCAGATAAGTAAA  400

seq1  GAATAGAGAGAAATGAGGTTTGTTTAAGTGTTTAAACAAATTAGGCTTGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATAGAGAGAAATGAGGTTTGTTTAAGTGTTTAAACAAATTAGGCTTGA  450

seq1  ACTCACTATTAAAAATGAATTTGAAAATTTCCAAATGGAAAACACATGCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCACTATTAAAAATGAATTTGAAAATTTCCAAATGGAAAACACATGCT  500

seq1  GCGACATAAAATTAGGAGGTGGGGAGAATTGGTCTTTTAGCAGAGTTGCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGACATAAAATTAGGAGGTGGGGAGAATTGGTCTTTTAGCAGAGTTGCT  550

seq1  CGGTTTTTGTCTAGGGCATGTGGGTTTGAGACAAGGACAAAGGGTGTGCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGTTTTTGTCTAGGGCATGTGGGTTTGAGACAAGGACAAAGGGTGTGCT  600

seq1  AAATTGGCACTCCTAATTCTGGGGTTCTTGGTTTAAGGCCGAGATATGCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTGGCACTCCTAATTCTGGGGTTCTTGGTTTAAGGCCGAGATATGCC  650

seq1  CAGACTAACCCAGGGACATGGGGGCAGGCTAAAGGTTCAGGCAGAGGATC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACTAACCCAGGGACATGGGGGCAGGCTAAAGGTTCAGGCAGAGGATC  700

seq1  TGTCCTGTTCTGGGCTGCTGCAGAGAGCTTAAGCCATTGATGCTGAGAGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCCTGTTCTGGGCTGCTGCAGAGAGCTTAAGCCATTGATGCTGAGAGC  750

seq1  TCTTGCTGAGAAGGGAGGCTGAAGACAGCAGGCTTGAATAAGATGGGAAT  800
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  TCTTGCTGAGAAGGGAGGCTGAAGACAGCA-GCTTGAATAAGATGGGAAT  799

seq1  AAAGGAAAGTTGCGTT-GTTTAGGTTGGAAGGATAAGCCTGAGAATAGGC  849
      ||||| |||||||||| |||||| | ||||||||||||||||| ||||||
seq2  AAAGG-AAGTTGCGTTGGTTTAGTTGGGAAGGATAAGCCTGAG-ATAGGC  847

seq1  TCATACAGAAATATAGAAGGGAATTTAATTGAAGCTAAATATACAGGAAA  899
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  TCATACAGAAATATAGAAGGGAATTTAATTGAAGCTAATTATACAGGAAA  897

seq1  GGATGTTAATTCAAGTTATATAAATAAAGGGGATATATATTATATATCCA  949
      ||||||||||||| ||||||||| ||||||||| || || ||||||||||
seq2  GGATGTTAATTCAGGTTATATAATTAAAGGGGAAATTTA-TATATATCCA  946

seq1  CAGATACTAATCTCGTTACAAGGGAGAGGAATAAAGGGAAATTGCATTGT  999
      |||||||||  |||||||||||||||| | ||||||||||||||||||| 
seq2  CAGATACTATCCTCGTTACAAGGGAGAAGGATAAAGGGAAATTGCATTGG  996

seq1  TTTAAGGATAGAAGGGA  1016
      |||||||   |||||||
seq2  TTTAAGGTATGAAGGGA  1013