BAC Information

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BAC

Clone NameB6Ng01-064G16
Chromosome10 (Build37)
Map Location 40,782,921 - 40,896,890
singlet/doubletdoublet
Overlap geneGpr6
Upstream geneSlc16a10, Bxdc1, 2410016F19Rik, Amd1, Amd2, LOC668051, Cdc2l6, LOC666374, Slc22a16, Ddo, 9030224M15Rik, Cdc40, Wasf1
Downstream geneA530089I17Rik, LOC633979, Zbtb24, Mical1, Smpd2, Ppil6, Cd164, 5033413D22Rik, EG629461, 2410017P07Rik, Sesn1, Armc2, 1700016J18Rik, LOC624784
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-064G16.bB6Ng01-064G16.g
ACCDH884209DH884210
length853711
definitionDH884209|Mus musculus domesticus DNA, BAC clone: B6Ng01-064G16, 5' end.DH884210|Mus musculus domesticus DNA, BAC clone: B6Ng01-064G16, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(40,782,921 - 40,783,753)(40,896,182 - 40,896,890)
sequence
gaattctgcacattgtacactctagtctcttcttgcctggcctctgtcca
ctcagaataactgtttggagactcattctgcatagatcactagttcattt
ctctcacttgtgagtaccatccaatcagataggtggaccccaatttagta
tttacttgttgatgaatatttgagtaacttgttttttttttcttcctttc
ttggtcttataaacccagctgctgtggacattcaaatagatgcctttata
tgggcacattctttcacttctttaaaaaattttcgattatgtggtgagat
gttttagttcttaggaaaccaccaaatcatcttccaaagtgtttttgcca
tcctgcatccccgttgacagtctctgaggattgtggatgctcgccatcct
cgctacacctgctatgatctttaacttggatcaagtgtttgcagcatcac
caagtaccaggctttgttccaaaactcatcagcttaggttcatgagtctt
cttataatcatctcttaactggcactcctccttcaggcaaatggagattg
tcaggtaggaactctgtgaacttcctcccaccacctataaacttagatct
ctcagtaccaattattctctccttgcctcctggcagagcaggggagctga
gtcctcaccgactccctgcactgtgcctcggagcccctccctacctaatc
aagtcttgtctgtcaagcatctttcttatctttttcaactacattttgct
acctccttgggtagaattataatattcaattcttggctttcggggggggg
agagagaaagagagacagagagaggagacagagagaggagtggggataga
gaa
gaattcctggtccagagattacctataaaactaaaagctgtgtgagattt
accagccagggaatacttggctgaaagtctgagatgtctatgtaactcag
cctgtatgttgcagctcccagctctctggtggagaataaacagcaaggag
gcggaagagagcagccaatctcaagaaaggtatgaatgctcagagtggag
gggtctcgactcagacatatgactctgggatgtcagtagactcctggtga
tggacaaggcttttgtatatcaatgttcctcatatatatatatatatata
tatatacacatatatatatacacacacacacacacacacacatatatata
tacacctggaacagacgtaagaaagaagggtccacaatgattattcatgc
ccctttggacactatgaaatattgggtaaggaaattagcgctgctgaggc
caagttaggaactttttctgggctgaggagagctccgtagagcagaagag
catacatgctgactaagaagtaacaaatttctcacaaggatactcaacac
agaaagccttctgtggaccacgtggtgttatggatatgaagggtgattga
tgggaacagaaagacaaagatacaaagatcatcgtggtcaaggaacctcc
cctggggaggaaatagtatcgagagaaaggatgtcagagggggtagtatg
gtggtttttat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_40782921_40783753
seq2: B6Ng01-064G16.b_40_876

seq1  GAATTCTGCACATTGTACACTCTAGTCTCTTCTTGCCTGGCCTCTGTCCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGCACATTGTACACTCTAGTCTCTTCTTGCCTGGCCTCTGTCCA  50

seq1  CTCAGAATAACTGTTTGGAGACTCATTCTGCATAGATCACTAGTTCATTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGAATAACTGTTTGGAGACTCATTCTGCATAGATCACTAGTTCATTT  100

seq1  CTCTCACTTGTGAGTACCATCCAATCAGATAGGTGGACCCCAATTTAGTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCACTTGTGAGTACCATCCAATCAGATAGGTGGACCCCAATTTAGTA  150

seq1  TTTACTTGTTGATGAATATTTGAGTAACTTGTTTTTTTTTTCTTCCTTTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACTTGTTGATGAATATTTGAGTAACTTGTTTTTTTTTTCTTCCTTTC  200

seq1  TTGGTCTTATAAACCCAGCTGCTGTGGACATTCAAATAGATGCCTTTATA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTCTTATAAACCCAGCTGCTGTGGACATTCAAATAGATGCCTTTATA  250

seq1  TGGGCACATTCTTTCACTTCTTTAAAAAATTTTCGATTATGTGGTGAGAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGCACATTCTTTCACTTCTTTAAAAAATTTTCGATTATGTGGTGAGAT  300

seq1  GTTTTAGTTCTTAGGAAACCACCAAATCATCTTCCAAAGTGTTTTTGCCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTAGTTCTTAGGAAACCACCAAATCATCTTCCAAAGTGTTTTTGCCA  350

seq1  TCCTGCATCCCCGTTGACAGTCTCTGAGGATTGTGGATGCTCGCCATCCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGCATCCCCGTTGACAGTCTCTGAGGATTGTGGATGCTCGCCATCCT  400

seq1  CGCTACACCTGCTATGATCTTTAACTTGGATCAAGTGTTTGCAGCATCAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCTACACCTGCTATGATCTTTAACTTGGATCAAGTGTTTGCAGCATCAC  450

seq1  CAAGTACCAGGCTTTGTTCCAAAACTCATCAGCTTAGGTTCATGAGTCTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTACCAGGCTTTGTTCCAAAACTCATCAGCTTAGGTTCATGAGTCTT  500

seq1  CTTATAATCATCTCTTAACTGGCACTCCTCCTTCAGGCAAATGGAGATTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATAATCATCTCTTAACTGGCACTCCTCCTTCAGGCAAATGGAGATTG  550

seq1  TCAGGTAGGAACTCTGTGAACTTCCTCCCACCACCTATAAACTTAGATCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGTAGGAACTCTGTGAACTTCCTCCCACCACCTATAAACTTAGATCT  600

seq1  CTCAGTACCAATTATTCTCTCCTTGCCTCCTGGCAGAGCAGGGGAGCTGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGTACCAATTATTCTCTCCTTGCCTCCTGGCAGAGCAGGGGAGCTGA  650

seq1  GTCCTCACCGACTCCCTGCACTGTGCCTCGGAGCCCCT-CCTACCTAATC  699
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  GTCCTCACCGACTCCCTGCACTGTGCCTCGGAGCCCCTCCCTACCTAATC  700

seq1  AAGTCTTGTCTGTCAAGCATCTTTCTTATCTTTTTCAACTACATATTGCT  749
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  AAGTCTTGTCTGTCAAGCATCTTTCTTATCTTTTTCAACTACATTTTGCT  750

seq1  ACCTCCTT-GGTAGAATAAT-ATATTCAATTCTTGGCTTTCGGGGGGGGG  797
      |||||||| |||||||| || |||||||||||||||||||||||||||||
seq2  ACCTCCTTGGGTAGAATTATAATATTCAATTCTTGGCTTTCGGGGGGGGG  800

seq1  AGAGAGAAAGAGAGACAGAGAGA-GAGACAGAGAGAG  833
      ||||||||||||||||||||||| |||||||||||||
seq2  AGAGAGAAAGAGAGACAGAGAGAGGAGACAGAGAGAG  837

seq1: chr10_40896182_40896890
seq2: B6Ng01-064G16.g_68_778 (reverse)

seq1  ATACAAACCACCATACCTACCCCCTCTGACATCCTTTCTCTCGATACTAT  50
      ||| ||||||||||| ||||||||||||||||||||||||||||||||||
seq2  ATAAAAACCACCATA-CTACCCCCTCTGACATCCTTTCTCTCGATACTAT  49

seq1  TTCCT-CCCAGGGGAGGTTCCTTGACCACGATGATCTTTGTATCTTTGTC  99
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTCCCCAGGGGAGGTTCCTTGACCACGATGATCTTTGTATCTTTGTC  99

seq1  -TTCTGTTCCCATCAATCACCCTTCATATCCATAACACCACGTGGTCCAC  148
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTGTTCCCATCAATCACCCTTCATATCCATAACACCACGTGGTCCAC  149

seq1  AGAAGGCTTTCTGTGTTGAGTATCCTTGTGAG-AATTTGTTACTTCTTAG  197
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  AGAAGGCTTTCTGTGTTGAGTATCCTTGTGAGAAATTTGTTACTTCTTAG  199

seq1  TCAGCATGTATGCTCTTCTGCTCTACGGAGCTCTCCTCAGCCCAGAAAAA  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCATGTATGCTCTTCTGCTCTACGGAGCTCTCCTCAGCCCAGAAAAA  249

seq1  GTTCCTAACTTGGCCTCAGCAGCGCTAATTTCCTTACCCAATATTTCATA  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCCTAACTTGGCCTCAGCAGCGCTAATTTCCTTACCCAATATTTCATA  299

seq1  GTGTCCAAAGGGGCATGAATAATCATTGTGGACCCTTCTTTCTTACGTCT  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTCCAAAGGGGCATGAATAATCATTGTGGACCCTTCTTTCTTACGTCT  349

seq1  GTTCCAGGTGTATATATATATGTGTGTGTGTGTGTGTGTGTGTATATATA  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCCAGGTGTATATATATATGTGTGTGTGTGTGTGTGTGTGTATATATA  399

seq1  TATGTGTATATATATATATATATATATATATGAGGAACATTGATATACAA  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTGTATATATATATATATATATATATATGAGGAACATTGATATACAA  449

seq1  AAGCCTTGTCCATCACCAGGAGTCTACTGACATCCCAGAGTCATATGTCT  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCCTTGTCCATCACCAGGAGTCTACTGACATCCCAGAGTCATATGTCT  499

seq1  GAGTCGAGACCCCTCCACTCTGAGCATTCATACCTTTCTTGAGATTGGCT  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTCGAGACCCCTCCACTCTGAGCATTCATACCTTTCTTGAGATTGGCT  549

seq1  GCTCTCTTCCGCCTCCTTGCTGTTTATTCTCCACCAGAGAGCTGGGAGCT  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTCTTCCGCCTCCTTGCTGTTTATTCTCCACCAGAGAGCTGGGAGCT  599

seq1  GCAACATACAGGCTGAGTTACATAGACATCTCAGACTTTCAGCCAAGTAT  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAACATACAGGCTGAGTTACATAGACATCTCAGACTTTCAGCCAAGTAT  649

seq1  TCCCTGGCTGGTAAATCTCACACAGCTTTTAGTTTTATAGGTAATCTCTG  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTGGCTGGTAAATCTCACACAGCTTTTAGTTTTATAGGTAATCTCTG  699

seq1  GACCAGGAATTC  709
      ||||||||||||
seq2  GACCAGGAATTC  711