BAC Information

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BAC

Clone NameB6Ng01-064O08
Chromosome10 (Build37)
Map Location 64,504,423 - 64,571,466
singlet/doubletdoublet
Overlap genenone
Upstream geneCtnna3, Lrrtm3
Downstream geneLOC665206, LOC216036
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-064O08.bB6Ng01-064O08.g
ACCDH884547DH884548
length1,1301,079
definitionDH884547|Mus musculus domesticus DNA, BAC clone: B6Ng01-064O08, 5' end.DH884548|Mus musculus domesticus DNA, BAC clone: B6Ng01-064O08, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(64,570,309 - 64,571,466)(64,504,423 - 64,505,513)
sequence
gaattccagttgtcctatgtccttagcaatatttaccactacaagttttt
ccagattagtgggtatgcagtattatatcaccatatttcagttaaatgtt
ctattctcaataataaggttaaatataatttcctatatctatttagcatt
ttaaagacatatctacttttataagattgtccatctttttattagagttt
taggtttattgagttatatcttcaaatattctatatagatttttattaaa
aatatatcatatcatatataaaaaataagacagcataattaaatatgtct
taaacaatgattaaaatatttattattttatataactaaatattatgtat
aatatatacttataaatatgtattttataaatgataatgattacttcaca
gtctctgccaagttttgatcttttcatcaaggcaaaaaattttacttact
aatatttattcccattttttaatgaaactcacatgattattaattagtat
tatatagttgttgaatttttcaagtgcttttactgtatcaattaattcaa
tgactatcaaacacaacagcaccaaggtgcttagatggtgaaacaaattt
cagtccttcttcagttaacaccatacaatgagcaatgattcagcagagtt
ccacttttcccaagtgatgcctctgggaaaggcagacagataacaacagc
tttcactgtcaagaaataggtaaagagggaagaaaaaaagacataaatga
ggagatcagaaaacaaatgaagaagtgcaccctagacatggttaatccac
agtcaagggcatcccaggtagatacacttctccttcagcatctccccagg
tttggacaatgagagcgaaccaagatcacaggatagagaggaagtcagtt
agagtcattattcttgatcctcttgcaagctacactctgtcagaatgtct
tttccttgtagctcagagtacagatcttatccattttgtctcctttccct
tcaataagtacagctgctctattctgtgtatgttatttagtgtccagaat
ctgtccaccactgtaattaccagtactacatttactcagactccaatttc
aacagcatctgtcgtttgagccagactgac
gaattcatagctgaatggtctacaaaaaaccaaaaagaacaagaaaacca
aaaagttgtgttgatggattataactttgaaaagtgtatttttttctctt
gctatgatgtgagtagtttttctttttactctggggcaatggagccagat
atctatgaattggaatcatcaaagttctgagcaaataaaaaaatctttat
tatttcttaggtatgttgttatattagtcagtgctttttagaggaattca
tatatatatatgaatttattagaatggcttaaaggctgttgtccaactag
cccaataatatctttatcactggaagtccaagaatccagtattcagtgtg
cgaggctggatttcttgctggtcttcagtatatgccagaatcctgaagaa
gtagccactaatgccagtgaaggagtggaattgacagtgagagaaagggc
aagtaggcaaagagcaaaagctttctttttccatatcatttatttatata
ggctgccagcagaagatatagctcagattaaatgtgggtcttccaacttt
aaaagatccagattaaaagtggatcttctcacttccaaagatgcacatta
aagctgggtcttcctacctcaaatgatttaatcaagaacaatctcttaac
agtgtacccaactacttatgttttagtaattcccagatacaggcaaattg
acaactaagaatagacatgacatttgtcacagctataataaatgagttac
acaggttttagctacagtgcctttaaaatgcatcttctagctctgggatt
gttatggttgagaggccatggagaagcacatttggtagagtgattaacat
gcataaagctttgggttcagtctctagcattacagaaaccagtatagttg
tacatatagtccctcagcacttcaaagtaaagatgtgtgatccatgcata
atcatgtcttcaagcaataatgttttagagctagcctaggctacatgaga
attttctcaggggaaatgtgatgctcttttgatcaagatcactgttcatt
ggttgtttgtttgggataaagagtcttgg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_64570309_64571466
seq2: B6Ng01-064O08.b_47_1176 (reverse)

seq1  GTCAGTCTGGCTCTAACGAAACAGATGGCTTGTTGAAATTGGGAGGTTCT  50
      ||||||||||||| ||||  |||||||   |||||||||| ||||  |||
seq2  GTCAGTCTGGCTCAAACG--ACAGATG--CTGTTGAAATT-GGAG--TCT  43

seq1  GAGTAAATGTAGTACTGGGTAATTTACAGTGGTGTGAACAAGATCTGGGA  100
      |||||||||||||||| ||||| ||||||||||| ||   ||||   |||
seq2  GAGTAAATGTAGTACT-GGTAA-TTACAGTGGTG-GA--CAGATTCTGGA  88

seq1  CAACTAATATAACATAACACAGAATTAGAAGCAGCTGTTACTTTATTTGA  150
      | ||||| ||||||| |||||||| ||| |||||||| |||||   ||||
seq2  C-ACTAA-ATAACAT-ACACAGAA-TAG-AGCAGCTG-TACTT--ATTGA  130

seq1  AGGGGAAGGGAGACAAAATGGGATAAGAATCTGTACTCTGGAGCTACAAG  200
      | ||||| ||||||||||| ||||||| ||||||||||| ||||||||||
seq2  A-GGGAAAGGAGACAAAAT-GGATAAG-ATCTGTACTCT-GAGCTACAAG  176

seq1  GAAAAAGACATTCTGACAGAGTGGTAGCTTGGCAAGAGGGATCAAGAATA  250
      | |||||||||||||||||||| ||||||| |||||| ||||||||||||
seq2  G-AAAAGACATTCTGACAGAGT-GTAGCTT-GCAAGA-GGATCAAGAATA  222

seq1  ATGACTCTAACTGACTTCCTCTCTATCCTGTGATCTTGGTTCGCTCTCAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGACTCTAACTGACTTCCTCTCTATCCTGTGATCTTGGTTCGCTCTCAT  272

seq1  TGTCCAAACCTGGGGAGATGCTGAAGGAGAAGTGTATCTACCTGGGATGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCCAAACCTGGGGAGATGCTGAAGGAGAAGTGTATCTACCTGGGATGC  322

seq1  CCTTGACTGTGGATTAACCATGTCTAGGGTGCACTTCTTCATTTGTTTTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGACTGTGGATTAACCATGTCTAGGGTGCACTTCTTCATTTGTTTTC  372

seq1  TGATCTCCTCATTTATGTCTTTTTTTCTTCCCTCTTTACCTATTTCTTGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATCTCCTCATTTATGTCTTTTTTTCTTCCCTCTTTACCTATTTCTTGA  422

seq1  CAGTGAAAGCTGTTGTTATCTGTCTGCCTTTCCCAGAGGCATCACTTGGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGAAAGCTGTTGTTATCTGTCTGCCTTTCCCAGAGGCATCACTTGGG  472

seq1  AAAAGTGGAACTCTGCTGAATCATTGCTCATTGTATGGTGTTAACTGAAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGTGGAACTCTGCTGAATCATTGCTCATTGTATGGTGTTAACTGAAG  522

seq1  AAGGACTGAAATTTGTTTCACCATCTAAGCACCTTGGTGCTGTTGTGTTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGACTGAAATTTGTTTCACCATCTAAGCACCTTGGTGCTGTTGTGTTT  572

seq1  GATAGTCATTGAATTAATTGATACAGTAAAAGCACTTGAAAAATTCAACA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAGTCATTGAATTAATTGATACAGTAAAAGCACTTGAAAAATTCAACA  622

seq1  ACTATATAATACTAATTAATAATCATGTGAGTTTCATTAAAAAATGGGAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTATATAATACTAATTAATAATCATGTGAGTTTCATTAAAAAATGGGAA  672

seq1  TAAATATTAGTAAGTAAAATTTTTTGCCTTGATGAAAAGATCAAAACTTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATATTAGTAAGTAAAATTTTTTGCCTTGATGAAAAGATCAAAACTTG  722

seq1  GCAGAGACTGTGAAGTAATCATTATCATTTATAAAATACATATTTATAAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGAGACTGTGAAGTAATCATTATCATTTATAAAATACATATTTATAAG  772

seq1  TATATATTATACATAATATTTAGTTATATAAAATAATAAATATTTTAATC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATATTATACATAATATTTAGTTATATAAAATAATAAATATTTTAATC  822

seq1  ATTGTTTAAGACATATTTAATTATGCTGTCTTATTTTTTATATATGATAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTTTAAGACATATTTAATTATGCTGTCTTATTTTTTATATATGATAT  872

seq1  GATATATTTTTAATAAAAATCTATATAGAATATTTGAAGATATAACTCAA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATATATTTTTAATAAAAATCTATATAGAATATTTGAAGATATAACTCAA  922

seq1  TAAACCTAAAACTCTAATAAAAAGATGGACAATCTTATAAAAGTAGATAT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACCTAAAACTCTAATAAAAAGATGGACAATCTTATAAAAGTAGATAT  972

seq1  GTCTTTAAAATGCTAAATAGATATAGGAAATTATATTTAACCTTATTATT  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTTAAAATGCTAAATAGATATAGGAAATTATATTTAACCTTATTATT  1022

seq1  GAGAATAGAACATTTAACTGAAATATGGTGATATAATACTGCATACCCAC  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAATAGAACATTTAACTGAAATATGGTGATATAATACTGCATACCCAC  1072

seq1  TAATCTGGAAAAACTTGTAGTGGTAAATATTGCTAAGGACATAGGACAAC  1150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATCTGGAAAAACTTGTAGTGGTAAATATTGCTAAGGACATAGGACAAC  1122

seq1  TGGAATTC  1158
      ||||||||
seq2  TGGAATTC  1130

seq1: chr10_64504423_64505513
seq2: B6Ng01-064O08.g_68_1146

seq1  GAATTCATAGCTGAATGGTCTACAAAAAACCAAAAAGAACAAGAAAACCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATAGCTGAATGGTCTACAAAAAACCAAAAAGAACAAGAAAACCA  50

seq1  AAAAGTTGTGTTGATGGATTATAACTTTGAAAAGTGTATTTTTTTCTCTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGTTGTGTTGATGGATTATAACTTTGAAAAGTGTATTTTTTTCTCTT  100

seq1  GCTATGATGTGAGTAGTTTTTCTTTTTACTCTGGGGCAATGGAGCCAGAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTATGATGTGAGTAGTTTTTCTTTTTACTCTGGGGCAATGGAGCCAGAT  150

seq1  ATCTATGAATTGGAATCATCAAAGTTCTGAGCAAATAAAAAAATCTTTAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTATGAATTGGAATCATCAAAGTTCTGAGCAAATAAAAAAATCTTTAT  200

seq1  TATTTCTTAGGTATGTTGTTATATTAGTCAGTGCTTTTTAGAGGAATTCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTCTTAGGTATGTTGTTATATTAGTCAGTGCTTTTTAGAGGAATTCA  250

seq1  TATATATATATGAATTTATTAGAATGGCTTAAAGGCTGTTGTCCAACTAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATATATATGAATTTATTAGAATGGCTTAAAGGCTGTTGTCCAACTAG  300

seq1  CCCAATAATATCTTTATCACTGGAAGTCCAAGAATCCAGTATTCAGTGTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAATAATATCTTTATCACTGGAAGTCCAAGAATCCAGTATTCAGTGTG  350

seq1  CGAGGCTGGATTTCTTGCTGGTCTTCAGTATATGCCAGAATCCTGAAGAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAGGCTGGATTTCTTGCTGGTCTTCAGTATATGCCAGAATCCTGAAGAA  400

seq1  GTAGCCACTAATGCCAGTGAAGGAGTGGAATTGACAGTGAGAGAAAGGGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGCCACTAATGCCAGTGAAGGAGTGGAATTGACAGTGAGAGAAAGGGC  450

seq1  AAGTAGGCAAAGAGCAAAAGCTTTCTTTTTCCATATCATTTATTTATATA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTAGGCAAAGAGCAAAAGCTTTCTTTTTCCATATCATTTATTTATATA  500

seq1  GGCTGCCAGCAGAAGATATAGCTCAGATTAAATGTGGGTCTTCCAACTTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGCCAGCAGAAGATATAGCTCAGATTAAATGTGGGTCTTCCAACTTT  550

seq1  AAAAGATCCAGATTAAAAGTGGATCTTCTCACTTCCAAAGATGCACATTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGATCCAGATTAAAAGTGGATCTTCTCACTTCCAAAGATGCACATTA  600

seq1  AAGCTGGGTCTTCCTACCTCAAATGATTTAATCAAGAACAATCTCTTAAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTGGGTCTTCCTACCTCAAATGATTTAATCAAGAACAATCTCTTAAC  650

seq1  AGTGTACCCAACTACTTATGTTTTAGTAATTCCCAGATACAGGCAAATTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTACCCAACTACTTATGTTTTAGTAATTCCCAGATACAGGCAAATTG  700

seq1  ACAACTAAGAATAGACATGACATTTGTCACAGCTATAATAAATGAGTTAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAACTAAGAATAGACATGACATTTGTCACAGCTATAATAAATGAGTTAC  750

seq1  ACAGGTTTTAGCTACAGTGCCTTTAAAATGCATCTTCTAGCTCTGGGATT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGTTTTAGCTACAGTGCCTTTAAAATGCATCTTCTAGCTCTGGGATT  800

seq1  GTTATGGTTGAGAGGCCATGGAGAAAGCACATTTGGTAGAGTGATTAACA  850
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  GTTATGGTTGAGAGGCCATGGAG-AAGCACATTTGGTAGAGTGATTAACA  849

seq1  TGCATAAAGCTTTGGGTTCAGTCTCTAGCATTACAGAAACCAGTAATAGT  900
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  TGCATAAAGCTTTGGGTTCAGTCTCTAGCATTACAGAAACCAGT-ATAGT  898

seq1  TGTACATATAGTCCCTCAGCACTTCAAAGTAAAGATGTTGTGATCCAATG  950
      ||||||||||||||||||||||||||||||||||||| |||||||| |||
seq2  TGTACATATAGTCCCTCAGCACTTCAAAGTAAAGATG-TGTGATCC-ATG  946

seq1  CATAATCATGTCTTCAAGCAAATAATGTTTTAGAAGCTAGCCTAGGCTAC  1000
      ||||||||||||||||||| ||||||||||||| ||||||||||||||||
seq2  CATAATCATGTCTTCAAGC-AATAATGTTTTAG-AGCTAGCCTAGGCTAC  994

seq1  ATGAGAATTTTTCTCCAGGGGAAAATGTGATTGCTCTTTTGATCAAGATC  1050
      ||||||| |||||| |||||| |||||||| |||||||||||||||||||
seq2  ATGAGAA-TTTTCT-CAGGGG-AAATGTGA-TGCTCTTTTGATCAAGATC  1040

seq1  ACTTGTTCATTTGTTTGTTTGTTTTGTGAT-AAGAGTCTTGG  1091
      || |||||| ||| ||||||| |||| ||| |||||||||||
seq2  AC-TGTTCA-TTGGTTGTTTG-TTTGGGATAAAGAGTCTTGG  1079