BAC Information

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BAC

Clone NameB6Ng01-065M17
Chromosome10 (Build37)
Map Location 90,436,411 - 90,578,720
singlet/doubletdoublet
Overlap geneApaf1, 1200009F10Rik
Upstream geneAnks1b, LOC544719
Downstream geneSlc25a3, Tmpo, LOC100041769, LOC100041799
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-065M17.bB6Ng01-065M17.g
ACCDH885165DH885166
length839663
definitionDH885165|Mus musculus domesticus DNA, BAC clone: B6Ng01-065M17, 5' end.DH885166|Mus musculus domesticus DNA, BAC clone: B6Ng01-065M17, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(90,436,411 - 90,437,252)(90,578,060 - 90,578,720)
sequence
gaattcacaccactttccttcctcctgcttctgcacatcattccaaactc
aacaccctgtcttcagtgtgtaactcagagattcgtagctatacatcaca
gctatccattgtcaaaacagctttccctttcttctacaaacccccagaga
cctgtgtttataaaaagctgcctaggctttttataggactttctaggact
ggatcatgatggagggaaggaagagggtgagacataggctaagacatccc
atgctgctcacccccagtggggtcacccagctgcctcctgcagctgcagc
agctgcggcttcatgagtgactttacttgattcggccagccagagaaagg
cagagtcaggtgattgacatgcaggatccccagagttcagaacatttcta
catcgtcttactgacctagtggaacagctgagacaagacaggcttacaca
caaactcagctcacaacgtggtcataaaagccattgaaagcaacccatat
tcaataccctatatgactctcctccaaggtctccgtgatacaatcaagca
gtccatacaggggcagagctcccaagagacctcaagacagaactcaggaa
acattgagtcagccccaggaagaagctacagcaacagttttctgacattc
aagaggctgatttctccacatgtctcaaaagtacaagtccagtttgtttt
gttttgttttgttttttgagagattgagagagagagagagagagagagag
agagagaaagagagacgttgagtcgggaaacaaaggagaataaatgtatt
ctggcatgttatcagcatttcgagggtggctatcatcag
gaattccaatagaaatgctttctttcattaccaatctgttttctaagaac
attgaaccaagtttcgtgttgtacatttagttagctgcatgttaaatgta
cacctgtactgaagttctagggagggttattaggtttgaaattgttaggt
gaaactttttgaagtatccgttgagctatctgggtcttacatcttttcat
ttgcctgggctagaaaggttcccttccagcatattaagcatattattctg
catggtggttccagggcagctgggtcttgagtagcttttaaggcttccag
taaaagcaaggctgaagttcatttaggacttgactttcagtggtggcgca
tgcctttaatcccagcacttgggaggcagaggccagcctggtctacagag
tgagttccaggacagccaggactgcactttgtcttgacaaaacaaacaaa
aaaaaaccaaaaaaacaaaaaaagagagaaaacatctactacatatacca
aatacaagaaaaaagaaattaaactttttgaggaaggttctcatatactc
ttggctggtctctaactcagtctccttccctgagagttattgcaagtgtg
cttcaccacaccttgcctaagacggaatttcttgtgaggatgggaatttg
accaaaatgtaat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_90436411_90437252
seq2: B6Ng01-065M17.b_48_886

seq1  GAATTCACACCACTTTCCTTCCTCCTGCTTCTGCACATCATTCCAAACTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACACCACTTTCCTTCCTCCTGCTTCTGCACATCATTCCAAACTC  50

seq1  AACACCCTGTCTTCAGTGTGTAACTCAGAGATTCGTAGCTATACATCACA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACCCTGTCTTCAGTGTGTAACTCAGAGATTCGTAGCTATACATCACA  100

seq1  GCTATCCATTGTCAAAACAGCTTTCCCTTTCTTCTACAAACCCCCAGAGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTATCCATTGTCAAAACAGCTTTCCCTTTCTTCTACAAACCCCCAGAGA  150

seq1  CCTGTGTTTATAAAAAGCTGCCTAGGCTTTTTATAGGACTTTCTAGGACT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTGTTTATAAAAAGCTGCCTAGGCTTTTTATAGGACTTTCTAGGACT  200

seq1  GGATCATGATGGAGGGAAGGAAGAGGGTGAGACATAGGCTAAGACATCCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATCATGATGGAGGGAAGGAAGAGGGTGAGACATAGGCTAAGACATCCC  250

seq1  ATGCTGCTCACCCCCAGTGGGGTCACCCAGCTGCCTCCTGCAGCTGCAGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTGCTCACCCCCAGTGGGGTCACCCAGCTGCCTCCTGCAGCTGCAGC  300

seq1  AGCTGCGGCTTCATGAGTGACTTTACTTGATTCGGCCAGCCAGAGAAAGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGCGGCTTCATGAGTGACTTTACTTGATTCGGCCAGCCAGAGAAAGG  350

seq1  CAGAGTCAGGTGATTGACATGCAGGATCCCCAGAGTTCAGAACATTTCTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGTCAGGTGATTGACATGCAGGATCCCCAGAGTTCAGAACATTTCTA  400

seq1  CATCGTCTTACTGACCTAGTGGAACAGCTGAGACAAGACAGGCTTACACA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCGTCTTACTGACCTAGTGGAACAGCTGAGACAAGACAGGCTTACACA  450

seq1  CAAACTCAGCTCACAACGTGGTCATAAAAGCCATTGAAAGCAACCCATAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACTCAGCTCACAACGTGGTCATAAAAGCCATTGAAAGCAACCCATAT  500

seq1  TCAATACCCTATATGACTCTCCTCCAAGGTCTCCGTGATACAATCAAGCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATACCCTATATGACTCTCCTCCAAGGTCTCCGTGATACAATCAAGCA  550

seq1  GTCCATACAGGGGCAGAGCTCCCAAGAGACCTCAAGACAGAACTCAGGAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCATACAGGGGCAGAGCTCCCAAGAGACCTCAAGACAGAACTCAGGAA  600

seq1  ACATTGAGTCAGCCCCAGGAAGAAGCTACAGCAACAGTTTTCTGACATTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTGAGTCAGCCCCAGGAAGAAGCTACAGCAACAGTTTTCTGACATTC  650

seq1  AAGAGGCTGATTTCTCCACATGTCTCAAAAGTACAAGTCCAGTTTGTTTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGGCTGATTTCTCCACATGTCTCAAAAGTACAAGTCCAGTTTGTTTT  700

seq1  GTTTTGTTTTGTTTTTTGAGAGATTGAGAGAGAGAGAGAGAGAGAGAGAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTGTTTTGTTTTTTGAGAGATTGAGAGAGAGAGAGAGAGAGAGAGAG  750

seq1  AGAGAGAGAGAGAGAAGGTTGAGTTGGGAAACCAAGGAGAATAAAGGTAT  800
      ||||||| |||||| | ||||||| ||||||| |||||||||||| ||||
seq2  AGAGAGAAAGAGAG-ACGTTGAGTCGGGAAACAAAGGAGAATAAATGTAT  799

seq1  TCTGGCATGTTTATCAGCATTTCCAAGGTGTGCTATCATCAG  842
      ||||||||| ||||||||||||| | |||| |||||||||||
seq2  TCTGGCATG-TTATCAGCATTTCGAGGGTG-GCTATCATCAG  839

seq1: chr10_90578060_90578720
seq2: B6Ng01-065M17.g_70_731 (reverse)

seq1  TTACATTTTGGTCCAACTACCATCCTCACAAGAAATTCAGTCTTAGGCAA  50
      ||||||||||||| || | ||||||||||||||||||| |||||||||||
seq2  TTACATTTTGGTCAAATTCCCATCCTCACAAGAAATTCCGTCTTAGGCAA  50

seq1  GGTGTGGTGATGCACACTTGCAATAACTCTCA-GGAAGGAGACTGAGTTA  99
      |||||||||| ||||||||||||||||||||| |||||||||||||||||
seq2  GGTGTGGTGAAGCACACTTGCAATAACTCTCAGGGAAGGAGACTGAGTTA  100

seq1  GAGACCAGCCAAGAGTATATGAGAACCTTCCTCAAAAAGTTTAATTTCTT  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGACCAGCCAAGAGTATATGAGAACCTTCCTCAAAAAGTTTAATTTCTT  150

seq1  TTTTCTTGTATTTGGTATTTGTAGTAGATGTTTTCTCTCTTTTTTTGTTT  199
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  TTTTCTTGTATTTGGTATATGTAGTAGATGTTTTCTCTCTTTTTTTGTTT  200

seq1  TTTTGGTTTTTTTTTGTTTGTTTTGTCAAGACAAAGTGCAGTCCTGGCTG  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGGTTTTTTTTTGTTTGTTTTGTCAAGACAAAGTGCAGTCCTGGCTG  250

seq1  TCCTGGAACTCACTCTGTAGACCAGGCTGGCCTCTGCCTCCCAAGTGCTG  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGGAACTCACTCTGTAGACCAGGCTGGCCTCTGCCTCCCAAGTGCTG  300

seq1  GGATTAAAGGCATGCGCCACCACTGAAAGTCAAGTCCTAAATGAACTTCA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATTAAAGGCATGCGCCACCACTGAAAGTCAAGTCCTAAATGAACTTCA  350

seq1  GCCTTGCTTTTACTGGAAGCCTTAAAAGCTACTCAAGACCCAGCTGCCCT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTGCTTTTACTGGAAGCCTTAAAAGCTACTCAAGACCCAGCTGCCCT  400

seq1  GGAACCACCATGCAGAATAATATGCTTAATATGCTGGAAGGGAACCTTTC  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAACCACCATGCAGAATAATATGCTTAATATGCTGGAAGGGAACCTTTC  450

seq1  TAGCCCAGGCAAATGAAAAGATGTAAGACCCAGATAGCTCAACGGATACT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCCCAGGCAAATGAAAAGATGTAAGACCCAGATAGCTCAACGGATACT  500

seq1  TCAAAAAGTTTCACCTAACAATTTCAAACCTAATAACCCTCCCTAGAACT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAAAAGTTTCACCTAACAATTTCAAACCTAATAACCCTCCCTAGAACT  550

seq1  TCAGTACAGGTGTACATTTAACATGCAGCTAACTAAATGTACAACACGAA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTACAGGTGTACATTTAACATGCAGCTAACTAAATGTACAACACGAA  600

seq1  ACTTGGTTCAATGTTCTTAGAAAACAGATTGGTAATGAAAGAAAGCATTT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGGTTCAATGTTCTTAGAAAACAGATTGGTAATGAAAGAAAGCATTT  650

seq1  CTATTGGAATTC  661
      ||||||||||||
seq2  CTATTGGAATTC  662