BAC Information

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BAC

Clone NameB6Ng01-068F23
Chromosome10 (Build37)
Map Location 60,980,364 - 61,120,250
singlet/doubletdoublet
Overlap geneLrrc20, Npffr1, Ppa1
Upstream geneCdh23, Slc29a3, Unc5b, Pcbd1, Sgpl1, 1700021K02Rik, Adamts14, Prf1, EG237361, X99384, Nodal, Eif4ebp2, D830039M14Rik
Downstream geneSar1a, Tysnd1, Aifm2, H2afy2, LOC100039284, Col13a1, EG436164, EG432466, 2010107G23Rik, Neurog3, Tspan15, Tacr2, Hk1, 2210417K05Rik, Hkdc1, Supv3l1, Vps26a, Srgn, 2510003E04Rik, Ddx21, Ddx50
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-068F23.bB6Ng01-068F23.g
ACCDH886977DH886978
length1,105656
definitionDH886977|Mus musculus domesticus DNA, BAC clone: B6Ng01-068F23, 5' end.DH886978|Mus musculus domesticus DNA, BAC clone: B6Ng01-068F23, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(61,119,139 - 61,120,250)(60,980,364 - 60,981,018)
sequence
gaattctatagagctggagagatggctcagtggttaagagcaccgactgt
tcttccagaggtcctgagttcaaatcccagcatccacatggtggctcaca
accatctgtactgggatccgacgccctcttctggtgagtctggagacggc
gacagcgtactcatacataaaataaattttttttaaaaatctgcaaatac
tcaaaagcgaaatgagttttaaaagctgggctgcagctcggctgctggaa
gggttaacgtgcataaaatccattcccagccctggacaaattccatgaca
cacaggcctataaaccttgaactttggatgtagaggcaggaggatcagga
atttacagtcatccactcggtagccagcaaggaaaataaagataactgag
gtgtggaagttagtagtgtgttagtccagcatgcgtgaaggcctgggttg
aactcttggtggttcatggaccgggtgtggcagcagcacctcaactccag
cactcgggaagcagaagcaactgagggcagcctcagctacatagcaatca
gggcggcatggtctgcatgagaccctgcctcaaaagtcaacgccgcccca
cctaacttcagagtgagaaagctctatcagaagagctcgaggtgtatcta
tttatgaggacatgctcctgcccgatatcggtcttgtcttgttttgagac
ctctgtagtcccagctataaactcaatctcagcctccccagtgctgggga
ctagggaaggcgccacccccactcagcctgctaatggtgctcttcaaaaa
gagtaccgggcttcaacactgctccccaagtgaccaggggctttaagctt
cctcttcagcctctgaggctgttctagaacgagatgcgctaagacgtcgc
aagtacacagaaaactgggatagactgctcttcaaagtcctgaattcaaa
tcccagcaaccacatggtggctcacaccatctgtataagatctgatgccc
tcttctgtgggtctgaagaacgcttcatggtattagaatttataattaat
cttcaggcagagcgagcaggttgacccgaggcaagaagagtctgaattca
attcc
gaattccctcctccttcttcctatctgctaattgtctcactgtggagaat
gaatgaaccttccacaaagggtgaatgaaataaaaagaagtttcatttgt
gtgggagtgacagcttgaaggtgaagcggtagctcttggtgggggggtgg
ggcgctcgctggcagaaagctgtattgccagtgaaccagtgacagctttg
agctctcacaggctgactgacaggggaagaaaagtgaagagacagccaag
gaccttgggctgccagctgggagtgcctcaccaacaggtcgccatcgggg
agctggagtgagcatcctggcccaacgccagggtgagccggttgtttgaa
aacagaatcatctccccccacaagcccgacccaggcatttagataggctc
aggtgggttctgactggctgagtgtcttcaaattagggaaaaaaaaaata
aggagcaatcattgggtcagtgggaagctgtcccaatccgaggggaaatt
ctcaattatagctgccactcagcctccttagggctctggctgtggtagca
caagtggagaaaaaaatgaatagaggaaagtgggttagctccccccaccc
caattctgccccagcacacaggtgcaaaaccctacctctttccagttttt
gtgcct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_61119139_61120250
seq2: B6Ng01-068F23.b_47_1151 (reverse)

seq1  GGAATTTGAATTCAGGACTTCTCCTTG-CTCTGGTCAACCCTGCTCGCTC  49
      |||| ||||||||| ||| ||| |||| ||| |||||| |||||||||||
seq2  GGAA-TTGAATTCA-GAC-TCTTCTTGCCTCGGGTCAA-CCTGCTCGCTC  46

seq1  TGGCCTGAAGATTTATTATTATATCTAAGTACACTGTAGCTGTCTTCAGA  99
      | ||||||||||| ||||| |  ||||| |||  || |||  ||||||||
seq2  T-GCCTGAAGATTAATTATAAATTCTAA-TACCATGAAGCGTTCTTCAGA  94

seq1  CACACCAGAAGAGGGCATCAGATCTTATAACAGATGGTTGTGAGCCACCA  149
      | || ||||||||||||||||||||||| |||||||| ||||||||||||
seq2  CCCA-CAGAAGAGGGCATCAGATCTTAT-ACAGATGG-TGTGAGCCACCA  141

seq1  TGTGGTTGCTGGGATTTGAATTCAGGACCTTTGGAAGAGCAGTCTAT-CC  198
      ||||||||||||||||||||||||||||  || |||||||||||||| ||
seq2  TGTGGTTGCTGGGATTTGAATTCAGGAC--TTTGAAGAGCAGTCTATCCC  189

seq1  AGTCTTCTGTGTACTTGCGACGTCTTAGCGCATCTCGTTCTAGAACAGCC  248
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTTCTGTGTACTTGCGACGTCTTAGCGCATCTCGTTCTAGAACAGCC  239

seq1  TCAGAGGCTGAAGAGGAAGCTTAAAGCCCCTGGTCACTTGGGGAGCAGTG  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGAGGCTGAAGAGGAAGCTTAAAGCCCCTGGTCACTTGGGGAGCAGTG  289

seq1  TTGAAGCCCGGTACTCTTTTTG-AGAGCACCATTAGCAGGCTGAGTGGGG  347
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  TTGAAGCCCGGTACTCTTTTTGAAGAGCACCATTAGCAGGCTGAGTGGGG  339

seq1  GTGGCGCCTTCCCTAGT-CCCAGCACTTGGGAGGCTGAGATTGAGTTTAT  396
      ||||||||||||||||| ||||||||| ||||||||||||||||||||||
seq2  GTGGCGCCTTCCCTAGTCCCCAGCACTGGGGAGGCTGAGATTGAGTTTAT  389

seq1  AGCTGGGACTACAGAGGTCTCAAAACAAGACAAGACCGATATCGGGCAGG  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGGGACTACAGAGGTCTCAAAACAAGACAAGACCGATATCGGGCAGG  439

seq1  AGCATGTCCTCATAAATAGATACACCTCGAGCTCTTCTGATAGAGCTTTC  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATGTCCTCATAAATAGATACACCTCGAGCTCTTCTGATAGAGCTTTC  489

seq1  TCACTCTGAAGTTAGGTGGGGCGGCGTTGACTTTTGAGGCAGGGTCTCAT  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTCTGAAGTTAGGTGGGGCGGCGTTGACTTTTGAGGCAGGGTCTCAT  539

seq1  GCAGACCATGCCGCCCTGATTGCTATGTAGCTGAGGCTGCCCTCAGTTGC  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGACCATGCCGCCCTGATTGCTATGTAGCTGAGGCTGCCCTCAGTTGC  589

seq1  TTCTGCTTCCCGAGTGCTGGAGTTGAGGTGCTGCTGCCACACCCGGTCCA  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGCTTCCCGAGTGCTGGAGTTGAGGTGCTGCTGCCACACCCGGTCCA  639

seq1  TGAACCACCAAGAGTTCAACCCAGGCCTTCACGCATGCTGGACTAACACA  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAACCACCAAGAGTTCAACCCAGGCCTTCACGCATGCTGGACTAACACA  689

seq1  CTACTAACTTCCACACCTCAGTTATCTTTATTTTCCTTGCTGGCTACCGA  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACTAACTTCCACACCTCAGTTATCTTTATTTTCCTTGCTGGCTACCGA  739

seq1  GTGGATGACTGTAAATTCCTGATCCTCCTGCCTCTACATCCAAAGTTCAA  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGATGACTGTAAATTCCTGATCCTCCTGCCTCTACATCCAAAGTTCAA  789

seq1  GGTTTATAGGCCTGTGTGTCATGGAATTTGTCCAGGGCTGGGAATGGATT  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTATAGGCCTGTGTGTCATGGAATTTGTCCAGGGCTGGGAATGGATT  839

seq1  TTATGCACGTTAACCCTTCCAGCAGCCGAGCTGCAGCCCAGCTTTTAAAA  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGCACGTTAACCCTTCCAGCAGCCGAGCTGCAGCCCAGCTTTTAAAA  889

seq1  CTCATTTCGCTTTTGAGTATTTGCAGATTTTTAAAAAAAATTTATTTTAT  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATTTCGCTTTTGAGTATTTGCAGATTTTTAAAAAAAATTTATTTTAT  939

seq1  GTATGAGTACGCTGTCGCCGTCTCCAGACTCACCAGAAGAGGGCGTCGGA  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATGAGTACGCTGTCGCCGTCTCCAGACTCACCAGAAGAGGGCGTCGGA  989

seq1  TCCCAGTACAGATGGTTGTGAGCCACCATGTGGATGCTGGGATTTGAACT  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCAGTACAGATGGTTGTGAGCCACCATGTGGATGCTGGGATTTGAACT  1039

seq1  CAGGACCTCTGGAAGAACAGTCGGTGCTCTTAACCACTGAGCCATCTCTC  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGACCTCTGGAAGAACAGTCGGTGCTCTTAACCACTGAGCCATCTCTC  1089

seq1  CAGCTCTATAGAATTC  1112
      ||||||||||||||||
seq2  CAGCTCTATAGAATTC  1105

seq1: chr10_60980364_60981018
seq2: B6Ng01-068F23.g_68_723

seq1  GAATTCCCTCCTCCTTCTTCCTATCTGCTAATTGTCTCACTGTGGAGAAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCTCCTCCTTCTTCCTATCTGCTAATTGTCTCACTGTGGAGAAT  50

seq1  GAATGAACCTTCCACAAAGGGTGAATGAAATAAAAAGAAGTTTCATTTGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGAACCTTCCACAAAGGGTGAATGAAATAAAAAGAAGTTTCATTTGT  100

seq1  GTGGGAGTGACAGCTTGAAGGTGAAGCGGTAGCTCTTGGTGGGGGGGTGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGGAGTGACAGCTTGAAGGTGAAGCGGTAGCTCTTGGTGGGGGGGTGG  150

seq1  GGCGCTCGCTGGCAGAAAGCTGTATTGCCAGTGAACCAGTGACAGCTTTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCGCTCGCTGGCAGAAAGCTGTATTGCCAGTGAACCAGTGACAGCTTTG  200

seq1  AGCTCTCACAGGCTGACTGACAGGGGAAGAAAAGTGAAGAGACAGCCAAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCTCACAGGCTGACTGACAGGGGAAGAAAAGTGAAGAGACAGCCAAG  250

seq1  GACCTTGGGCTGCCAGCTGGGAGTGCCTCACCAACAGGTCGCCATCGGGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCTTGGGCTGCCAGCTGGGAGTGCCTCACCAACAGGTCGCCATCGGGG  300

seq1  AGCTGGAGTGAGCATCCTGGCCCAACGCCAGGGTGAGCCGGTTGTTTGAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGGAGTGAGCATCCTGGCCCAACGCCAGGGTGAGCCGGTTGTTTGAA  350

seq1  AACAGAATCATCTCCCCCCACAAGCCCGACCCAGGCATTTAGATAGGCTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGAATCATCTCCCCCCACAAGCCCGACCCAGGCATTTAGATAGGCTC  400

seq1  AGGTGGGTTCTGACTGGCTGAGTGTCTTCAAATTAGGGAAAAAAAAAATA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTGGGTTCTGACTGGCTGAGTGTCTTCAAATTAGGGAAAAAAAAAATA  450

seq1  AGGAGCAATCATTGGGTCAGTGGGAAGCTGTCCCAATCCGAGGGGAAATT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGCAATCATTGGGTCAGTGGGAAGCTGTCCCAATCCGAGGGGAAATT  500

seq1  CTCAATTATAGCTGCCACTCAGCCTCCTTAGGGCTCTGGCTGTGGTAGCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAATTATAGCTGCCACTCAGCCTCCTTAGGGCTCTGGCTGTGGTAGCA  550

seq1  CAAGTGGAGAAAAAAATGAATAGAGGAAAGTGGGTTAGCTCCCCCCACCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTGGAGAAAAAAATGAATAGAGGAAAGTGGGTTAGCTCCCCCCACCC  600

seq1  CAATTCTGCCCCAGCACACAGGTGCAAAACCCTACCTCTTTCCAG-TTTT  649
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  CAATTCTGCCCCAGCACACAGGTGCAAAACCCTACCTCTTTCCAGTTTTT  650

seq1  GTGCCT  655
      ||||||
seq2  GTGCCT  656