BAC Information

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BAC

Clone NameB6Ng01-069A06
Chromosome10 (Build37)
Map Location 103,814,676 - 103,945,446
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100043277, 6430590A10Rik, Slc6a15, EG667697, LOC667701, EG627488, EG667692, EG667695, LOC100043292
Downstream geneLOC100042383, Tmtc2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-069A06.bB6Ng01-069A06.g
ACCDH887443DH887444
length1,1591,141
definitionDH887443|Mus musculus domesticus DNA, BAC clone: B6Ng01-069A06, 5' end.DH887444|Mus musculus domesticus DNA, BAC clone: B6Ng01-069A06, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(103,944,279 - 103,945,446)(103,814,676 - 103,815,725)
sequence
gaattccattctcttaactgggcttccttctctggcctcagtaggagagg
atgtacccagactagcagtgacttgatgtgcgaggatgggttggtgtcta
ggggtggctcccccttctcaaaggagaagaagagagagttatggtgggaa
gaactgtgaggtgagactgagaggaggtggatgctataattgggatgtaa
agtgaataaataaataaataaataagtaaataaataaatggaaaaataaa
acccttagtgtctgggaacctcaatattctctattgtatgtacttccctt
cgaattcttttttttaaagcaaacaaatacaaatttgtagttagtgtatg
cagcaggtttccacataacttaatatatccttaaagtttgttaatcttga
ttacaacttgtcccctgagccaccctcctcttccctttctcttaaaaaaa
caaaaaagaattatctattattttatatgcattggtggtttgtctgcatg
aatgtctgtgtgagggtgtcagattccttggaacaataaagcaatcaata
tatactaaattgcactgaactctgatagatttattggaaaatactctaac
cattcctgcctttgagtgtcttatataattgtagattcattttgtcatca
cattttatttaaggagctgtaagctagatgcagacttctgaagtttagtg
cgcactgtatgtctttccctgtgagtcagtttctaggtcatgcttgaagc
agacatctgagatgttaaactttcatgggaatctgtggaacgaagtgcat
acatttgccatgcctcataggccttcatcaaagtcaggaccttgaaacat
ctgcccatattcccttggccaaattaagacttgcagcacagtgatggtca
atggacatatagaatggtacaccacctatgtagaagaaagtttgctaatt
ggaatagctacttcataatatttggatatcatttgtgaatccaatagaat
tatggattatttctacagaaataaattatagacaaagtatcatacagcct
gttttagtaaagtaatatttttttgtgtgacttcgactgaaattatttgg
atgaatccagcacctcacctactcttaacctacttcatttcatttggttt
aatttattt
gaattctctttttagctatgtactacattttaaaattgagttatttgttc
tgtttgtttgattgtttgttttttgaacagagctctttatatatatttga
tatatatatttgatagtagccttctatcagacatagggttggtgacaatt
tttttcctaatctgtaggttgtgcttttgtcatattgacagtgtcctttg
ccttacagaaacttttcagtttcaggaggtcccatttatcaattcttgat
cttagagactgagccacatggtggtctgttcaggaaattttcccctgtac
caatgaatttgaggctcctttccactttctcttctattacattcagtgca
tctggctttgtgttgaggtctttgatccacttgaacttgagacttgtgca
aggtgataaatatggatctaattttagtcttctacatgcagtctacccgt
tagaccagtgtcagagaccataccatgagaaagggagcccttcacaatct
cccactctgacaggccaaatggcctcatgctaggagccggttatcactcc
ctcctccctgttccctttctggcacctgaggctgtaaaaggtgattatag
tcccctcttccttatctcttcctgaattcccatgacatccaaggacaaga
gttacacctgagcccagcctgacaccccaaggctgtaaggaggatctatg
ttccggagataagatgcagagtgcctgccgcctggcccctgacttcagcc
ctcatgtcagcagatgcccaccttttttgttctttgttaaattcccccct
cgaccccttcctattcaccgcgatgtatgctttaaaaccaggcacctcaa
cctaataaaaggagaccttgataggtacactctatttggtcatccatcac
ttctcttttctctccaatcccatttcctacaagtttgtggtccccttgca
ccccacataactgaatcctgcaagatgagatacaccagcaccatttatga
gatgttttctcttaatctgtaagttttggacttcttgttcaagatcatgt
gccataagtatgtgggttatttctagtctcattcatccattagtaaccgt
gtctgctccctcaatacaatgtgttgttagcactgtgcttg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_103944279_103945446
seq2: B6Ng01-069A06.b_45_1203 (reverse)

seq1  AAATAAA--ACACAAAATGAAAATGAAGTAAGTGTAAGAGTAAGTAGAGT  48
      |||||||  | || ||||| |||||||||| || |||||||| ||   ||
seq2  AAATAAATTAAACCAAATG-AAATGAAGTAGGT-TAAGAGTAGGTGAGGT  48

seq1  GCTTGATTCATTCCAAAATATTTTCAGTCGAAGTCACACAAAAAATATTT  98
      ||| |||||||  | ||||| ||||||||||||||||||||||||   ||
seq2  GCTGGATTCAT--CCAAATAATTTCAGTCGAAGTCACACAAAAAAATATT  96

seq1  ACTTTTACTAAAACAGGCTGTATGATACTTTGTCTATAATTTTATTTCTG  148
      || |||||||||||||||||||||||||||||||||||| ||||||||||
seq2  AC-TTTACTAAAACAGGCTGTATGATACTTTGTCTATAA-TTTATTTCTG  144

seq1  TTAGAAATAATCCATAATTCTATTGGAATTCACAAAATGATATCCAAATA  198
       ||||||||||||||||||||||||| |||||| ||||||||||||||||
seq2  -TAGAAATAATCCATAATTCTATTGG-ATTCAC-AAATGATATCCAAATA  191

seq1  TTATTGAAGTAGCTATTCCAATTAGCAAACCTTCCTTCTACATAGGTGGT  248
      ||| ||||||||||||||||||||||||| ||| ||||||||||||||||
seq2  TTA-TGAAGTAGCTATTCCAATTAGCAAA-CTTTCTTCTACATAGGTGGT  239

seq1  GTACCATTCTATATGTCCATTGACCATCACTGTGCTGCAAGTCTTAATTT  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACCATTCTATATGTCCATTGACCATCACTGTGCTGCAAGTCTTAATTT  289

seq1  GGCCAAGGGAATATGGGCAGATGTTTCAAGGTCCTGACTTTGATGAAGGC  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCAAGGGAATATGGGCAGATGTTTCAAGGTCCTGACTTTGATGAAGGC  339

seq1  CTATGAGGCATGGCAAATGTATGCACTTCGTTCCACAGATTCCCATGAAA  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATGAGGCATGGCAAATGTATGCACTTCGTTCCACAGATTCCCATGAAA  389

seq1  GTTTAACATCTCAGATGTCTGCTTCAAGCATGACCTAGAAACTGACTCAC  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTAACATCTCAGATGTCTGCTTCAAGCATGACCTAGAAACTGACTCAC  439

seq1  AGGGAAAGACATACAGTGCGCACTAAACTTCAGAAGTCTGCATCTAGCTT  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGAAAGACATACAGTGCGCACTAAACTTCAGAAGTCTGCATCTAGCTT  489

seq1  ACAGCTCCTTAAATAAAATGTGATGACAAAATGAATCTACAATTATATAA  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCTCCTTAAATAAAATGTGATGACAAAATGAATCTACAATTATATAA  539

seq1  GACACTCAAAGGCAGGAATGGTTAGAGTATTTTCCAATAAATCTATCAGA  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACACTCAAAGGCAGGAATGGTTAGAGTATTTTCCAATAAATCTATCAGA  589

seq1  GTTCAGTGCAATTTAGTATATATTGATTGCTTTATTGTTCCAAGGAATCT  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCAGTGCAATTTAGTATATATTGATTGCTTTATTGTTCCAAGGAATCT  639

seq1  GACACCCTCACACAGACATTCATGCAGACAAACCACCAATGCATATAAAA  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACACCCTCACACAGACATTCATGCAGACAAACCACCAATGCATATAAAA  689

seq1  TAATAGATAATTCTTTTTTGTTTTTTTAAGAGAAAGGGAAGAGGAGGGTG  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATAGATAATTCTTTTTTGTTTTTTTAAGAGAAAGGGAAGAGGAGGGTG  739

seq1  GCTCAGGGGACAAGTTGTAATCAAGATTAACAAACTTTAAGGATATATTA  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCAGGGGACAAGTTGTAATCAAGATTAACAAACTTTAAGGATATATTA  789

seq1  AGTTATGTGGAAACCTGCTGCATACACTAACTACAAATTTGTATTTGTTT  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTATGTGGAAACCTGCTGCATACACTAACTACAAATTTGTATTTGTTT  839

seq1  GCTTTAAAAAAAAGAATTCGAAGGGAAGTACATACAATAGAGAATATTGA  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTAAAAAAAAGAATTCGAAGGGAAGTACATACAATAGAGAATATTGA  889

seq1  GGTTCCCAGACACTAAGGGTTTTATTTTTCCATTTATTTATTTACTTATT  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTCCCAGACACTAAGGGTTTTATTTTTCCATTTATTTATTTACTTATT  939

seq1  TATTTATTTATTTATTCACTTTACATCCCAATTATAGCATCCACCTCCTC  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTATTTATTTATTCACTTTACATCCCAATTATAGCATCCACCTCCTC  989

seq1  TCAGTCTCACCTCACAGTTCTTCCCACCATAACTCTCTCTTCTTCTCCTT  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTCTCACCTCACAGTTCTTCCCACCATAACTCTCTCTTCTTCTCCTT  1039

seq1  TGAGAAGGGGGAGCCACCCCTAGACACCAACCCATCCTCGCACATCAAGT  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGAAGGGGGAGCCACCCCTAGACACCAACCCATCCTCGCACATCAAGT  1089

seq1  CACTGCTAGTCTGGGTACATCCTCTCCTACTGAGGCCAGAGAAGGAAGCC  1148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGCTAGTCTGGGTACATCCTCTCCTACTGAGGCCAGAGAAGGAAGCC  1139

seq1  CAGTTAAGAGAATGGAATTC  1168
      ||||||||||||||||||||
seq2  CAGTTAAGAGAATGGAATTC  1159

seq1: chr10_103814676_103815725
seq2: B6Ng01-069A06.g_181_1209

seq1  ATAGTAGCCTTCTATCAGACATAGGGTTGGTGACAATTTTTTTCCTAATC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGTAGCCTTCTATCAGACATAGGGTTGGTGACAATTTTTTTCCTAATC  50

seq1  TGTAGGTTGTGCTTTTGTCATATTGACAGTGTCCTTTGCCTTACAGAAAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGGTTGTGCTTTTGTCATATTGACAGTGTCCTTTGCCTTACAGAAAC  100

seq1  TTTTCAGTTTCAGGAGGTCCCATTTATCAATTCTTGATCTTAGAGACTGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCAGTTTCAGGAGGTCCCATTTATCAATTCTTGATCTTAGAGACTGA  150

seq1  GCCACATGGTGGTCTGTTCAGGAAATTTTCCCCTGTACCAATGAATTTGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCACATGGTGGTCTGTTCAGGAAATTTTCCCCTGTACCAATGAATTTGA  200

seq1  GGCTCCTTTCCACTTTCTCTTCTATTACATTCAGTGCATCTGGCTTTGTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTCCTTTCCACTTTCTCTTCTATTACATTCAGTGCATCTGGCTTTGTG  250

seq1  TTGAGGTCTTTGATCCACTTGAACTTGAGACTTGTGCAAGGTGATAAATA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGGTCTTTGATCCACTTGAACTTGAGACTTGTGCAAGGTGATAAATA  300

seq1  TGGATCTAATTTTAGTCTTCTACATGCAGTCTACCCGTTAGACCAGTGTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATCTAATTTTAGTCTTCTACATGCAGTCTACCCGTTAGACCAGTGTC  350

seq1  AGAGACCATACCATGAGAAAGGGAGCCCTTCACAATCTCCCACTCTGACA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGACCATACCATGAGAAAGGGAGCCCTTCACAATCTCCCACTCTGACA  400

seq1  GGCCAAATGGCCTCATGCTAGGAGCCGGTTATCACTCCCTCCTCCCTGTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCAAATGGCCTCATGCTAGGAGCCGGTTATCACTCCCTCCTCCCTGTT  450

seq1  CCCTTTCTGGCACCTGAGGCTGTAAAAGGTGATTATAGTCCCCTCTTCCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTTCTGGCACCTGAGGCTGTAAAAGGTGATTATAGTCCCCTCTTCCT  500

seq1  TATCTCTTCCTGAATTCCCATGACATCCAAGGACAAGAGTTACACCTGAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTCTTCCTGAATTCCCATGACATCCAAGGACAAGAGTTACACCTGAG  550

seq1  CCCAGCCTGACACCCCAAGGCTGTAAGGAGGATCTATGTTCCGGAGATAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGCCTGACACCCCAAGGCTGTAAGGAGGATCTATGTTCCGGAGATAA  600

seq1  GATGCAGAGTGCCTGCCGCCTGGCCCCTGACTTCAGCCCTCATGTCAGCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGCAGAGTGCCTGCCGCCTGGCCCCTGACTTCAGCCCTCATGTCAGCA  650

seq1  GATGCCCACCTTTTTTGTTCTTTGTTAAATTCCCCCCTCGACCCCTTCCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGCCCACCTTTTTTGTTCTTTGTTAAATTCCCCCCTCGACCCCTTCCT  700

seq1  ATTCACCGCGATGTATGCTTTAAAACCAGGCACCTCAACCTAATAAAAGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCACCGCGATGTATGCTTTAAAACCAGGCACCTCAACCTAATAAAAGG  750

seq1  AGACCTTGATAGGTACACTCTATTTGGTCATCCATCACTTCTCTTTTCTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACCTTGATAGGTACACTCTATTTGGTCATCCATCACTTCTCTTTTCTC  800

seq1  TTCCAATCCCATTTCCTTACAGGTTTGTGGTCCCCCTTGCACCCACCAAT  850
       ||||||||||||||| |||| ||||||||| |||||||||||| |  ||
seq2  -TCCAATCCCATTTCC-TACAAGTTTGTGGT-CCCCTTGCACCC-CACAT  846

seq1  AACTGAATCCTGCAGGATGAGATACACCAGCACCATTTATTGAAGATGTT  900
      |||||||||||||| |||||||||||||||||||||||||   |||||||
seq2  AACTGAATCCTGCAAGATGAGATACACCAGCACCATTTAT--GAGATGTT  894

seq1  TTCTTCTTTAATCTGTAAGTTTTGGACTTCTTTGTCAAAGATCATGTGCC  950
      ||||   ||||||||||||||||||||||| ||||  ||||||||||| |
seq2  TTCT--CTTAATCTGTAAGTTTTGGACTTC-TTGTTCAAGATCATGTG-C  940

seq1  CATAAGTATGTGGGTTTATTTCTAGGTCTTCAATTCTAATCCATTAGTAA  1000
      |||||||||||||| ||||||||| ||||   ||||  ||||||||||||
seq2  CATAAGTATGTGGG-TTATTTCTA-GTCT--CATTC--ATCCATTAGTAA  984

seq1  ACGTGTCTGCCTCTCTACCAATACCATGTGGTTGTTAGCACTGTTGCTTG  1050
       |||||||| ||| ||  |||||| |||| ||||||||||||| ||||||
seq2  CCGTGTCTG-CTCCCT--CAATACAATGT-GTTGTTAGCACTG-TGCTTG  1029