BAC Information

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BAC

Clone NameB6Ng01-070P06
Chromosome10 (Build37)
Map Location 106,108,073 - 106,278,386
singlet/doubletdoublet
Overlap genePpfia2
Upstream geneBC067068, Ccdc59, EG667758, EG639162, Olfr1556-ps1
Downstream gene8430416H19Rik, Lin7a, Myf5, Myf6, Ptprq, EG628870
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-070P06.bB6Ng01-070P06.g
ACCDH888793DH888794
length1,1661,113
definitionDH888793|Mus musculus domesticus DNA, BAC clone: B6Ng01-070P06, 5' end.DH888794|Mus musculus domesticus DNA, BAC clone: B6Ng01-070P06, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(106,108,073 - 106,109,249)(106,277,301 - 106,278,386)
sequence
gaattccattaaaataacaacaacaacaacaagaaactacaaagaagctt
catatatcttactcttgcttgtcttatggcaggtatcagatgtggaaatt
ttgtcctggggatgtctccatagagtctgttttggtattcctcaattaca
aatatgtgatactttcaataacatttttcttcattcacagtgtatagctt
ttgcacacaacatacatatacacacttacttttaaacaacaggaaactgg
tcatgcgttgtggtgccttactttaatcgcaatactcttgagattgaggc
aggtaggtttctgtgaattcaaagagagtttggtttacataatgagttcc
aagtcatcaacatgctacacagtgagaacttgcatcaaaacagaaagaca
tgtatatttaaataaaataaacataaatttcattcatttttatattttaa
aaaatattaaaaatttgagtagattgttatttatttacttgggttgttga
tagcacatagatgtttgtattaaaaaactgaaatatttaaatatatatac
atatatatatatatatataattgagatttagaaatctgtagagacaatct
tattcatctaataaataccacttattttcttatcaaataagatgttctaa
taccatatttctacaaattcatattttcacaaagtttaattatgagcaaa
ttaattttacagatattttctgaaaggataactgtacaatcattgtgatt
aattgatgtgcaattctatatttccacatatcagattttagagatgagag
tcagaaatttttaaagatacatgttagataacatgaagactggactggac
aaagattagattttatatccactgactatgtagaattttaaatgacatat
atgaaatatttggacacattttgaagaacatcactaaaatatttagcttc
cactaaaataaaatatgttgagtaccaaaaaaatatatagaacaagtaca
tgaaagctaaagaactgtaatataattttaaatggcccagagccaaatac
acaacataaatccacctcttcaagtcttgttcatccattttactaataat
catttgactctgagaagtaagtacttgcgcaatctcagcagctgatgcat
ttaaattggttatagg
gaattccacaggaagactcatagagtcaatggacctgaacccttggagat
ctcagagtctgaaccatcagggaaagaacatacacaggctggatcaaggg
ctctccacatgtatgtagcagatgttcagctggtcttcatgtgggagtgg
aaaaactggtacatgtggctatcccaaaagatgttgcctgtatgtgggat
atgttcttctagctgggctgctttgtctggcctcagtgggagaggatgtg
cctagcctcagagacttaatgtactctggtggggaatactggagcagggg
gcacctgctcagagaagaagcagtggggggagggccaaaggattgtgggg
caaggtcacttggaggggtggcaataagttggttgtaaagtgaataagta
agtaaataattaataaataaataaaagtaaaacaactgaaagaagcagaa
atttattataaaaaggaagcctatagtcttaaatttaaagtttattgaga
tgtaaataagtgaataagtaaggtacatttatgattgatagacccacaat
gaaagaaaggctgccaataatctaataacaggcttttaaagtttatattt
catttctcaacacagtgagactgtttttaatgagaatctcccccacagac
tcatatgttggcatgcttgggctccagtttgtaaaactctttgggaaaag
ttagaagtatggcttttttggaagaagtatgtctttgggagtttgctttg
tagtatcaaaagcccacaatattccagttagttgtttttcctcttcccat
gtatggatcagatttaaaatctcagctatgcctctaatagcatgcttgtc
ctagattctgtgtagtctgccatgatgatcataaactcaaattctgggac
tgtaaaatctaacaaactctgccttcagtaagcttccttgggcatgatgt
ctcttcccagcatagaaaaccagctagcacagtggcatgcagcatttgtg
acatttctccttaattgttctttatattttcagactacaaaaatcctatt
tacctcgatgtttctttgacgtttttgtaaattattactcagtagtacct
tctagccacattt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_106108073_106109249
seq2: B6Ng01-070P06.b_44_1209

seq1  GAATTCCATTAAAATAACAACAACAACAACAAGAAACTACAAAGAAGCTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATTAAAATAACAACAACAACAACAAGAAACTACAAAGAAGCTT  50

seq1  CATATATCTTACTCTTGCTTGTCTTATGGCAGGTATCAGATGTGGAAATT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATATCTTACTCTTGCTTGTCTTATGGCAGGTATCAGATGTGGAAATT  100

seq1  TTGTCCTGGGGATGTCTCCATAGAGTCTGTTTTGGTATTCCTCAATTACA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCCTGGGGATGTCTCCATAGAGTCTGTTTTGGTATTCCTCAATTACA  150

seq1  AATATGTGATACTTTCAATAACATTTTTCTTCATTCACAGTGTATAGCTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATGTGATACTTTCAATAACATTTTTCTTCATTCACAGTGTATAGCTT  200

seq1  TTGCACACAACATACATATACACACTTACTTTTAAACAACAGGAAACTGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCACACAACATACATATACACACTTACTTTTAAACAACAGGAAACTGG  250

seq1  TCATGCGTTGTGGTGCCTTACTTTAATCGCAATACTCTTGAGATTGAGGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGCGTTGTGGTGCCTTACTTTAATCGCAATACTCTTGAGATTGAGGC  300

seq1  AGGTAGGTTTCTGTGAATTCAAAGAGAGTTTGGTTTACATAATGAGTTCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTAGGTTTCTGTGAATTCAAAGAGAGTTTGGTTTACATAATGAGTTCC  350

seq1  AAGTCATCAACATGCTACACAGTGAGAACTTGCATCAAAACAGAAAGACA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTCATCAACATGCTACACAGTGAGAACTTGCATCAAAACAGAAAGACA  400

seq1  TGTATATTTAAATAAAATAAACATAAATTTCATTCATTTTTATATTTTAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATATTTAAATAAAATAAACATAAATTTCATTCATTTTTATATTTTAA  450

seq1  AAAATATTAAAAATTTGAGTAGATTGTTATTTATTTACTTGGGTTGTTGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATATTAAAAATTTGAGTAGATTGTTATTTATTTACTTGGGTTGTTGA  500

seq1  TAGCACATAGATGTTTGTATTAAAAAACTGAAATATTTAAATATATATAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCACATAGATGTTTGTATTAAAAAACTGAAATATTTAAATATATATAC  550

seq1  ATATATATATATATATATAATTGAGATTTAGAAATCTGTAGAGACAATCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATATATATATATATAATTGAGATTTAGAAATCTGTAGAGACAATCT  600

seq1  TATTCATCTAATAAATACCACTTATTTTCTTATCAAATAAGATGTTCTAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCATCTAATAAATACCACTTATTTTCTTATCAAATAAGATGTTCTAA  650

seq1  TACCATATTTCTACAAATTCATATTTTCACAAAGTTTAATTATGAGCAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCATATTTCTACAAATTCATATTTTCACAAAGTTTAATTATGAGCAAA  700

seq1  TTAATTTTACAGATATTTTCTGAAAGGATAACTGTACAATCATTGTGATT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATTTTACAGATATTTTCTGAAAGGATAACTGTACAATCATTGTGATT  750

seq1  AATTGATGTGCAATTCTATATTTCCACATATCAGATTTTAGAGATGAGAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGATGTGCAATTCTATATTTCCACATATCAGATTTTAGAGATGAGAG  800

seq1  TCAGAAATTTTTAAAGATACATGTTAGATAACATGAAGACTGGACTGGAC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGAAATTTTTAAAGATACATGTTAGATAACATGAAGACTGGACTGGAC  850

seq1  AAAGATTAGATTTTATATCCACTGACTATGTAGAATTTTAAATGACATAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGATTAGATTTTATATCCACTGACTATGTAGAATTTTAAATGACATAT  900

seq1  ATGAAATATTTGGACACATTTTGAAGAACATCACTAAAATATTTAGCTTC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAATATTTGGACACATTTTGAAGAACATCACTAAAATATTTAGCTTC  950

seq1  CACTAAAATAAAATATGTTGAGTACCAAAAAAATATATAGAACAAGTACA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTAAAATAAAATATGTTGAGTACCAAAAAAATATATAGAACAAGTACA  1000

seq1  TGAAAGCTAAAAGAAACTGTAATATAATTTTAAATGGCCCAGAGCCAAAT  1050
      |||||||||||   ||||||||||||||||||||||||||||||||||||
seq2  TGAAAGCTAAA--GAACTGTAATATAATTTTAAATGGCCCAGAGCCAAAT  1048

seq1  ACACAACATAAATCCACCTCTTCAAGGTCTTGTTCATCCATTTTACTAAT  1100
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  ACACAACATAAATCCACCTCTTCAA-GTCTTGTTCATCCATTTTACTAAT  1097

seq1  AATTCATTTGACTCTTGAGAAGTACAGTACTTGCGGCAAATCTCAGCAAG  1150
      || ||||||||||| ||||||||| ||||||||||   ||||||||||  
seq2  AA-TCATTTGACTC-TGAGAAGTA-AGTACTTGCG--CAATCTCAGCA--  1140

seq1  GCTGAGTGCATTTAAATTGTTTATAGG  1177
      ||||| ||||||||||||| |||||||
seq2  GCTGA-TGCATTTAAATTGGTTATAGG  1166

seq1: chr10_106277301_106278386
seq2: B6Ng01-070P06.g_99_1180 (reverse)

seq1  AAATGTGTGCTAG-AGGTACTTAACCTGAGTAATAATTTACAAAAATGTC  49
      ||||||| ||||| |||||||    ||||||||||||||||||||| |||
seq2  AAATGTG-GCTAGAAGGTACT---ACTGAGTAATAATTTACAAAAACGTC  46

seq1  AAAGAAACATCGA-GTAAATAGGATTTTTGTAGTCCTGAAAATATAAAGA  98
      ||||||||||||| |||||||||||||||||||| |||||||||||||||
seq2  AAAGAAACATCGAGGTAAATAGGATTTTTGTAGT-CTGAAAATATAAAGA  95

seq1  ACATATAA-GAGAAATGTCACAAATGCTGCATTGCCACTGTGCTAGCTGG  147
      |||  ||| |||||||||||||||||||||| ||||||||||||||||||
seq2  ACAATTAAGGAGAAATGTCACAAATGCTGCA-TGCCACTGTGCTAGCTGG  144

seq1  TTTTCTATTGCTGGGAAGAGACATCATGCCCAAGGAAGCTTACTGAAGGC  197
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTA-TGCTGGGAAGAGACATCATGCCCAAGGAAGCTTACTGAAGGC  193

seq1  AGAGTTTGTTAGATTTTACAGTCCCAGAATTTGAGTTTATGATCATCATG  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTTTGTTAGATTTTACAGTCCCAGAATTTGAGTTTATGATCATCATG  243

seq1  GCAGACTACACAGAATCTAGGACAAGCATGCTATTAGAGGCATAGCTGAG  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGACTACACAGAATCTAGGACAAGCATGCTATTAGAGGCATAGCTGAG  293

seq1  ATTTTAAATCTGATCCATACATGGGAAGAGGAAAAACAACTAACTGGAAT  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTAAATCTGATCCATACATGGGAAGAGGAAAAACAACTAACTGGAAT  343

seq1  ATTGTGGGCTTTTGATACTACAAAGCAAACTCCCAAAGACATACTTCTTC  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTGGGCTTTTGATACTACAAAGCAAACTCCCAAAGACATACTTCTTC  393

seq1  CAAAAAAGCCATACTTCTAACTTTTCCCAAAGAGTTTTACAAACTGGAGC  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAAAGCCATACTTCTAACTTTTCCCAAAGAGTTTTACAAACTGGAGC  443

seq1  CCAAGCATGCCAACATATGAGTCTGTGGGGGAGATTCTCATTAAAAACAG  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGCATGCCAACATATGAGTCTGTGGGGGAGATTCTCATTAAAAACAG  493

seq1  TCTCACTGTGTTGAGAAATGAAATATAAACTTTAAAAGCCTGTTATTAGA  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCACTGTGTTGAGAAATGAAATATAAACTTTAAAAGCCTGTTATTAGA  543

seq1  TTATTGGCAGCCTTTCTTTCATTGTGGGTCTATCAATCATAAATGTACCT  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTGGCAGCCTTTCTTTCATTGTGGGTCTATCAATCATAAATGTACCT  593

seq1  TACTTATTCACTTATTTACATCTCAATAAACTTTAAATTTAAGACTATAG  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTATTCACTTATTTACATCTCAATAAACTTTAAATTTAAGACTATAG  643

seq1  GCTTCCTTTTTATAATAAATTTCTGCTTCTTTCAGTTGTTTTACTTTTAT  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTCCTTTTTATAATAAATTTCTGCTTCTTTCAGTTGTTTTACTTTTAT  693

seq1  TTATTTATTAATTATTTACTTACTTATTCACTTTACAACCAACTTATTGC  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTATTAATTATTTACTTACTTATTCACTTTACAACCAACTTATTGC  743

seq1  CACCCCTCCAAGTGACCTTGCCCCACAATCCTTTGGCCCTCCCCCCACTG  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCCCTCCAAGTGACCTTGCCCCACAATCCTTTGGCCCTCCCCCCACTG  793

seq1  CTTCTTCTCTGAGCAGGTGCCCCCTGCTCCAGTATTCCCCACCAGAGTAC  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTTCTCTGAGCAGGTGCCCCCTGCTCCAGTATTCCCCACCAGAGTAC  843

seq1  ATTAAGTCTCTGAGGCTAGGCACATCCTCTCCCACTGAGGCCAGACAAAG  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAGTCTCTGAGGCTAGGCACATCCTCTCCCACTGAGGCCAGACAAAG  893

seq1  CAGCCCAGCTAGAAGAACATATCCCACATACAGGCAACATCTTTTGGGAT  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCCAGCTAGAAGAACATATCCCACATACAGGCAACATCTTTTGGGAT  943

seq1  AGCCACATGTACCAGTTTTTCCACTCCCACATGAAGACCAGCTGAACATC  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCACATGTACCAGTTTTTCCACTCCCACATGAAGACCAGCTGAACATC  993

seq1  TGCTACATACATGTGGAGAGCCCTTGATCCAGCCTGTGTATGTTCTTTCC  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTACATACATGTGGAGAGCCCTTGATCCAGCCTGTGTATGTTCTTTCC  1043

seq1  CTGATGGTTCAGACTCTGAGATCTCCAAGGGTTCAGGTC  1086
      |||||||||||||||||||||||||||||||||||||||
seq2  CTGATGGTTCAGACTCTGAGATCTCCAAGGGTTCAGGTC  1082