BAC Information

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BAC

Clone NameB6Ng01-072I19
Chromosome10 (Build37)
Map Location 79,297,337 - 79,428,126
singlet/doubletdoublet
Overlap genePtbp1, BC005764, Prtn3, Ela2, Cfd, Thrap5, C030046I01Rik, Kiss1r, Arid3a, Wdr18
Upstream geneOlfr1356, GA_x5J8B7W4DUT-12263-11330, GA_x5J8B7TPDN2-1058-1265, Olfr233-ps1, Olfr8, GA_x5J8B7TNKDU-1250-1574, Olfr1353, Olfr1352, Olfr1351, Olfr57, 2610008E11Rik, EG624765, AJ543404, LOC100041709, EG624845, EG625029, Ppap2c, Mier2, Theg, 4932409I22Rik, Shc2, Gm1157, Madcam1, Gtrgeo22, Cdc34, Gzmm, Bsg, Hcn2, Polrmt, Fgf22, Rnf126, Fstl3, Prssl1, Palm, 9130017N09Rik
Downstream geneGrin3b, ORF61, Cnn2, Abca7, Hmha1, Polr2e, Gpx4, Sbno2, Stk11, Dos, Atp5d, Midn, Cirbp, 1600002K03Rik, Efna2, Mum1, Ndufs7, Gamt, Dazap1, Rps15, Apc2, 2310011J03Rik, Pcsk4, Reep6, Adamtsl5, 6330514A18Rik, Rkhd1, Mbd3, Uqcr, Tcfe2a, Onecut3, Atp8b3, Rexo1, Klf16, D10Bwg1364e, Scamp4, Csnk1g2, Btbd2, Mknk2, Mobkl2a, 9030607L17Rik, Ap3d1, Dot1l, Plekhj1, Sf3a2, Amh, Jsrp1, Oaz1, BC072620, Lsm7, 3110056O03Rik, Tmprss9, Timm13, Lmnb2, Gadd45b, Gng7, LOC100042403
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-072I19.bB6Ng01-072I19.g
ACCDH889938DH889939
length7421,102
definitionDH889938|Mus musculus domesticus DNA, BAC clone: B6Ng01-072I19, 5' end.DH889939|Mus musculus domesticus DNA, BAC clone: B6Ng01-072I19, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(79,297,337 - 79,298,078)(79,427,019 - 79,428,126)
sequence
gaattcacagagagccatctgtctctacctccccaagcgctggaattaaa
ggtgagcaccaccacctcttagaggtaaccaaaaagttaactgcagcttc
aggctaagctggaaagagccttcccacctcttcctccctatctgaaagct
caggctgagcccaggacacaatcccagttctgcctctctttcacctagtc
tcagtttcttcttctgaacgaaagagtgactctgttagcaacactccacc
caccccaccctaccccagcatgtatcgccgaggctaccctgcacagggga
acacagcagagcagaattaatgacatgtctctggagcagggttaagtcaa
aacctcccagttagaagcagcatttgaactgcgccaccagagggagccaa
aacaccagccccagacgatgctgctgggcagcggaagagctgactgttgg
ggtggggatgggagtagggtccccactgtagctactaaaaggttttccct
ccaaaccccaaggatgaggaacagttgtggcaggttcctggaacagccct
gggctgagagggcagcaggaatgttggccactcagcacaaagctggtgtg
aattccagggatgtctcctgcacagcgtttaacgttctgacctaggaggg
attcatgcagggtagatgtgtttggatctattaaattttattcacttttg
ttatgggatggtgtgaggtcaaatggtatgggatgtggaggt
gaattcatgggtcgaggctggggatgctaccttcacagtctggtccaatg
aagcggtggccacccgggccatggggcctccgaagccgcagtgcaggtct
gtgattgggagcgtgtgctgggaccagacatgtcttggggcaaggatcct
ggatgggtctgcctgtagcacactgggcacacaacagcagtgaggccacg
tggaaagcccctggcctgcctccccaagcccccaagaatgggatacctca
gtagtcaccagcctattgcctgccctgagacctccatagcctttctgggt
agatctctggcacatgccctacctgcagaggctccaggccagcgccaagc
agtccttgcccgctgagacaaaatgactgccatcccctgtaaacttcagg
caggacacgtcctggtagtgccggctgaggatgaccaggaggttcccggt
gcagacctgtgagaggccgggcactgaaggtcaggggcaacacagaatat
gccaacccataagaaccccgtccacctgctccagggccattggcatatgg
aaccaggaaggctgcaggccctcatcactgtgcacttggccagctctggc
tgtgtcctcagtgtctgacaataatgggattctaccctgtccccagaaga
ggcccctgctggctcaaaatgtgtgagcctccagctcagcacacagaggg
gcaatgggggcggtgtccttccactacttgggaggctaaggccatgtggg
ttaaaatggtgtcccatgtccagtttgccacagggtcagggccacttgta
gaggcaggatacagaaagtttgactgtgtgcaccccatgccatcaagggg
cggggcactgggctgtgagaagctgcaggaccccattctgggggttcgga
acttctggattggctcaggtccctcagcctgcacaggggcccgaggactg
caggttctcactcttggggcagcacagacgccgctcgatgctgcgagagt
tagttaaggctggcgtctagacatctcaacgggcaacagggggaggccta
ggcctgcagaggacgtgtgtgaacccaggcctgccattggggaaaggtgg
gt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_79297337_79298078
seq2: B6Ng01-072I19.b_44_785

seq1  GAATTCACAGAGAGCCATCTGTCTCTACCTCCCCAAGCGCTGGAATTAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACAGAGAGCCATCTGTCTCTACCTCCCCAAGCGCTGGAATTAAA  50

seq1  GGTGAGCACCACCACCTCTTAGAGGTAACCAAAAAGTTAACTGCAGCTTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGAGCACCACCACCTCTTAGAGGTAACCAAAAAGTTAACTGCAGCTTC  100

seq1  AGGCTAAGCTGGAAAGAGCCTTCCCACCTCTTCCTCCCTATCTGAAAGCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTAAGCTGGAAAGAGCCTTCCCACCTCTTCCTCCCTATCTGAAAGCT  150

seq1  CAGGCTGAGCCCAGGACACAATCCCAGTTCTGCCTCTCTTTCACCTAGTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCTGAGCCCAGGACACAATCCCAGTTCTGCCTCTCTTTCACCTAGTC  200

seq1  TCAGTTTCTTCTTCTGAACGAAAGAGTGACTCTGTTAGCAACACTCCACC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTTTCTTCTTCTGAACGAAAGAGTGACTCTGTTAGCAACACTCCACC  250

seq1  CACCCCACCCTACCCCAGCATGTATCGCCGAGGCTACCCTGCACAGGGGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCCCACCCTACCCCAGCATGTATCGCCGAGGCTACCCTGCACAGGGGA  300

seq1  ACACAGCAGAGCAGAATTAATGACATGTCTCTGGAGCAGGGTTAAGTCAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAGCAGAGCAGAATTAATGACATGTCTCTGGAGCAGGGTTAAGTCAA  350

seq1  AACCTCCCAGTTAGAAGCAGCATTTGAACTGCGCCACCAGAGGGAGCCAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCTCCCAGTTAGAAGCAGCATTTGAACTGCGCCACCAGAGGGAGCCAA  400

seq1  AACACCAGCCCCAGACGATGCTGCTGGGCAGCGGAAGAGCTGACTGTTGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACCAGCCCCAGACGATGCTGCTGGGCAGCGGAAGAGCTGACTGTTGG  450

seq1  GGTGGGGATGGGAGTAGGGTCCCCACTGTAGCTACTAAAAGGTTTTCCCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGGGGATGGGAGTAGGGTCCCCACTGTAGCTACTAAAAGGTTTTCCCT  500

seq1  CCAAACCCCAAGGATGAGGAACAGTTGTGGCAGGTTCCTGGAACAGCCCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAACCCCAAGGATGAGGAACAGTTGTGGCAGGTTCCTGGAACAGCCCT  550

seq1  GGGCTGAGAGGGCAGCAGGAATGTTGGCCACTCAGCACAAAGCTGGTGTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCTGAGAGGGCAGCAGGAATGTTGGCCACTCAGCACAAAGCTGGTGTG  600

seq1  AATTCCAGGGATGTCTCCTGCACAGCGTTTAACGTTCTGACCTAGGAGGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCCAGGGATGTCTCCTGCACAGCGTTTAACGTTCTGACCTAGGAGGG  650

seq1  ATTCATGCAGGGTAGATGTGTTTGGATCTATTAAATTTTATTCACTTTTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCATGCAGGGTAGATGTGTTTGGATCTATTAAATTTTATTCACTTTTG  700

seq1  TTATGGGATGGTGTGAGGTCAAATGGTATGGGATGTGGAGGT  742
      ||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGGGATGGTGTGAGGTCAAATGGTATGGGATGTGGAGGT  742

seq1: chr10_79427019_79428126
seq2: B6Ng01-072I19.g_66_1167 (reverse)

seq1  ACCCAACCTTTCCCCAGT-GCAGGCCTGGGCTCACACACTGTCCCTTCTG  49
      |||| ||||||||||| | ||||||||||| |||||||| ||||  ||||
seq2  ACCC-ACCTTTCCCCAATGGCAGGCCTGGGTTCACACAC-GTCC--TCTG  46

seq1  CAGCCCCTAGGCCTCCCCCTGTTGCCCGTTGAGATGTCTAGACGCCAGCC  99
      |||  |||||||||||||||||||||||||||||||||||||||||||||
seq2  CAG-GCCTAGGCCTCCCCCTGTTGCCCGTTGAGATGTCTAGACGCCAGCC  95

seq1  TTAACTAACTCTTCCGCAGCATCGAGCGGCGTCTGTGCTG-CCCAAGAGT  148
      ||||||||||||  |||||||||||||||||||||||||| |||||||||
seq2  TTAACTAACTCT--CGCAGCATCGAGCGGCGTCTGTGCTGCCCCAAGAGT  143

seq1  GAGAACCTGCAGTCCTC-GGCCCCTGTGCAGGCTGAGGGACCCTGAGCCA  197
      ||||||||||||||||| |||||||||||||||||||||| |||||||||
seq2  GAGAACCTGCAGTCCTCGGGCCCCTGTGCAGGCTGAGGGA-CCTGAGCCA  192

seq1  ATTCCAGAAGTTCCGAACCCCCAGAATGGGGTCCTGCAGCTTCTCACAGC  247
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  A-TCCAGAAGTTCCGAACCCCCAGAATGGGGTCCTGCAGCTTCTCACAGC  241

seq1  CCAGTGCCCCGCCCCTTGATGGCATGGGGTGCACACAGTCAAACTTTCTG  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTGCCCCGCCCCTTGATGGCATGGGGTGCACACAGTCAAACTTTCTG  291

seq1  TATCCTGCCTCTACAAGTGGCCCTGACCCTGTGGCAAACTGGACATGGGA  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCCTGCCTCTACAAGTGGCCCTGACCCTGTGGCAAACTGGACATGGGA  341

seq1  CACCATTTTAACCCACATGGCCTTAGCCTCCCAAGTAGTGGAAGGACACC  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCATTTTAACCCACATGGCCTTAGCCTCCCAAGTAGTGGAAGGACACC  391

seq1  GCCCCCATTGCCCCTCTGTGTGCTGAGCTGGAGGCTCACACATTTTGAGC  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCCCATTGCCCCTCTGTGTGCTGAGCTGGAGGCTCACACATTTTGAGC  441

seq1  CAGCAGGGGCCTCTTCTGGGGACAGGGTAGAATCCCATTATTGTCAGACA  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCAGGGGCCTCTTCTGGGGACAGGGTAGAATCCCATTATTGTCAGACA  491

seq1  CTGAGGACACAGCCAGAGCTGGCCAAGTGCACAGTGATGAGGGCCTGCAG  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGGACACAGCCAGAGCTGGCCAAGTGCACAGTGATGAGGGCCTGCAG  541

seq1  CCTTCCTGGTTCCATATGCCAATGGCCCTGGAGCAGGTGGACGGGGTTCT  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCCTGGTTCCATATGCCAATGGCCCTGGAGCAGGTGGACGGGGTTCT  591

seq1  TATGGGTTGGCATATTCTGTGTTGCCCCTGACCTTCAGTGCCCGGCCTCT  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGGGTTGGCATATTCTGTGTTGCCCCTGACCTTCAGTGCCCGGCCTCT  641

seq1  CACAGGTCTGCACCGGGAACCTCCTGGTCATCCTCAGCCGGCACTACCAG  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGGTCTGCACCGGGAACCTCCTGGTCATCCTCAGCCGGCACTACCAG  691

seq1  GACGTGTCCTGCCTGAAGTTTACAGGGGATGGCAGTCATTTTGTCTCAGC  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACGTGTCCTGCCTGAAGTTTACAGGGGATGGCAGTCATTTTGTCTCAGC  741

seq1  GGGCAAGGACTGCTTGGCGCTGGCCTGGAGCCTCTGCAGGTAGGGCATGT  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCAAGGACTGCTTGGCGCTGGCCTGGAGCCTCTGCAGGTAGGGCATGT  791

seq1  GCCAGAGATCTACCCAGAAAGGCTATGGAGGTCTCAGGGCAGGCAATAGG  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGAGATCTACCCAGAAAGGCTATGGAGGTCTCAGGGCAGGCAATAGG  841

seq1  CTGGTGACTACTGAGGTATCCCATTCTTGGGGGCTTGGGGAGGCAGGCCA  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTGACTACTGAGGTATCCCATTCTTGGGGGCTTGGGGAGGCAGGCCA  891

seq1  GGGGCTTTCCACGTGGCCTCACTGCTGTTGTGTGCCCAGTGTGCTACAGG  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGCTTTCCACGTGGCCTCACTGCTGTTGTGTGCCCAGTGTGCTACAGG  941

seq1  CAGACCCATCCAGGATCCTTGCCCCAAGACATGTCTGGTCCCAGCACACG  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACCCATCCAGGATCCTTGCCCCAAGACATGTCTGGTCCCAGCACACG  991

seq1  CTCCCAATCACAGACCTGCACTGCGGCTTCGGAGGCCCCATGGCCCGGGT  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCAATCACAGACCTGCACTGCGGCTTCGGAGGCCCCATGGCCCGGGT  1041

seq1  GGCCACCGCTTCATTGGACCAGACTGTGAAGGTAGCATCCCCAGCCTCGA  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCACCGCTTCATTGGACCAGACTGTGAAGGTAGCATCCCCAGCCTCGA  1091

seq1  CCCATGAATTC  1108
      |||||||||||
seq2  CCCATGAATTC  1102