BAC Information

Click to search

BAC

Clone NameB6Ng01-074F18
Chromosome10 (Build37)
Map Location 58,806,960 - 58,962,450
singlet/doubletdoublet
Overlap geneP4ha1, LOC100039174, Pla2g12b, Oit3, Ccdc109a
Upstream geneLims1, Ranbp2, 6230424H07Rik, LOC100038981, Edar, LOC624335, LOC100039099, Sh3md4, Sept10, Ankrd57, LOC664892
Downstream geneLOC100039225, Cbara1, EG664907, LOC664936, Dnajb12, Ddit4, D10Ertd641e, Ascc1, Spock2, Chst3, LOC100039080, Psap, Cdh23, 4632428N05Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-074F18.bB6Ng01-074F18.g
ACCDH891231DH891232
length3001,122
definitionDH891231|Mus musculus domesticus DNA, BAC clone: B6Ng01-074F18, 5' end.DH891232|Mus musculus domesticus DNA, BAC clone: B6Ng01-074F18, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(58,962,151 - 58,962,450)(58,806,960 - 58,808,078)
sequence
gaattccaggtcccaataactaataacttttttctaataactccagggtc
tcccctcctctcggtcctcaagctttgagagctgagtgcctgagttggta
ctttggttgaaggtagtaaaagtctctcactggtgtgatgcttcagtagt
tttattatatcaggagataaacgtggaaaaaaacaaacttcaaattgagt
acactgctatctatagatatgttttgctgtaggccaactgcaatagtttt
acacagttaattatagaatgcccataaactctggaggggggggagggaag

gaattcacagagatctacctgtgtctgcctcctgagaacaacctaaggaa
ggaattttagtatataagaaaacctcatttttccggtattttagaacatc
cgctatttcttaaatgatttgtatatgaaactataatcatcaaaatgttt
atgtttattaactaaaagctaagatgttcagaatatgaacaggtattaaa
aggttctgtagtatgaggctaaagagatggctcagtggttaagagcagtg
gctgctcttgcagaggacttgggttaaattcctagcacacacaatatacc
tatctgtaattccagttccaggggatcagatatctttttctggcttctgt
atgtactatgcacatatgtgatacataaacacacatgtaggcagaataca
catgcacatatttctttttaatttaaaagaaagttctatagtatgaaaca
gtctattaaatatagtacaagttgtatttgactttatggtaatttgcttg
tcactgtctttcattattactggagaaataaaaagtgttgcctctggtca
gactgaaattggttttctccgtaacaaaataagacagatggttattgagg
aagatactttttgtgtatctcttcatctgggataagtcctgggatggtaa
atttaatctattatgttaaattaaagtaaactggaatacttgcataagta
ttcagatttatgtatttttattttctgttttctattagcactacatctta
acatttgataagattataacatttaaaagccgggcgtggtggtgcacgcc
tttaatcccagcactcaggaggcagaggtaggcggatttctgagttcgag
gccagccttggtctccaaagtgagttccaggacagccaggggttatacag
agaaaccctgtctcaaccaacaacaaactaacaaacaacaaaagagatta
tactttcaaaattggtttctggtttacacccacatttaatagatattaat
tacgtcatggtgttgcagtattagggccattcccaagaataagtaggtag
aacacgtaacttggtctacctaaagacttagataacaataccattgatat
gcctgtattatagaagagcctg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_58962151_58962450
seq2: B6Ng01-074F18.b_43_342 (reverse)

seq1  CTTCCCTCCCCCCCCTCCAGAGTTTATGGGCATTCTATAATTAACTGTGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCCTCCCCCCCCTCCAGAGTTTATGGGCATTCTATAATTAACTGTGT  50

seq1  AAAACTATTGCAGTTGGCCTACAGCAAAACATATCTATAGATAGCAGTGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACTATTGCAGTTGGCCTACAGCAAAACATATCTATAGATAGCAGTGT  100

seq1  ACTCAATTTGAAGTTTGTTTTTTTCCACGTTTATCTCCTGATATAATAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCAATTTGAAGTTTGTTTTTTTCCACGTTTATCTCCTGATATAATAAA  150

seq1  ACTACTGAAGCATCACACCAGTGAGAGACTTTTACTACCTTCAACCAAAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTACTGAAGCATCACACCAGTGAGAGACTTTTACTACCTTCAACCAAAG  200

seq1  TACCAACTCAGGCACTCAGCTCTCAAAGCTTGAGGACCGAGAGGAGGGGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCAACTCAGGCACTCAGCTCTCAAAGCTTGAGGACCGAGAGGAGGGGA  250

seq1  GACCCTGGAGTTATTAGAAAAAAGTTATTAGTTATTGGGACCTGGAATTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCCTGGAGTTATTAGAAAAAAGTTATTAGTTATTGGGACCTGGAATTC  300

seq1: chr10_58806960_58808078
seq2: B6Ng01-074F18.g_68_1189

seq1  GAATTCACAGAGATCTACCTGTGTCTGCCTCCTGAGAACAACCTAAGGAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACAGAGATCTACCTGTGTCTGCCTCCTGAGAACAACCTAAGGAA  50

seq1  GGAATTTTAGTATATAAGAAAACCTCATTTTTCCGGTATTTTAGAACATC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAATTTTAGTATATAAGAAAACCTCATTTTTCCGGTATTTTAGAACATC  100

seq1  CGCTATTTCTTAAATGATTTGTATATGAAACTATAATCATCAAAATGTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCTATTTCTTAAATGATTTGTATATGAAACTATAATCATCAAAATGTTT  150

seq1  ATGTTTATTAACTAAAAGCTAAGATGTTCAGAATATGAACAGGTATTAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTTATTAACTAAAAGCTAAGATGTTCAGAATATGAACAGGTATTAAA  200

seq1  AGGTTCTGTAGTATGAGGCTAAAGAGATGGCTCAGTGGTTAAGAGCAGTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTTCTGTAGTATGAGGCTAAAGAGATGGCTCAGTGGTTAAGAGCAGTG  250

seq1  GCTGCTCTTGCAGAGGACTTGGGTTAAATTCCTAGCACACACAATATACC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGCTCTTGCAGAGGACTTGGGTTAAATTCCTAGCACACACAATATACC  300

seq1  TATCTGTAATTCCAGTTCCAGGGGATCAGATATCTTTTTCTGGCTTCTGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTGTAATTCCAGTTCCAGGGGATCAGATATCTTTTTCTGGCTTCTGT  350

seq1  ATGTACTATGCACATATGTGATACATAAACACACATGTAGGCAGAATACA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTACTATGCACATATGTGATACATAAACACACATGTAGGCAGAATACA  400

seq1  CATGCACATATTTCTTTTTAATTTAAAAGAAAGTTCTATAGTATGAAACA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGCACATATTTCTTTTTAATTTAAAAGAAAGTTCTATAGTATGAAACA  450

seq1  GTCTATTAAATATAGTACAAGTTGTATTTGACTTTATGGTAATTTGCTTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTATTAAATATAGTACAAGTTGTATTTGACTTTATGGTAATTTGCTTG  500

seq1  TCACTGTCTTTCATTATTACTGGAGAAATAAAAAGTGTTGCCTCTGGTCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTGTCTTTCATTATTACTGGAGAAATAAAAAGTGTTGCCTCTGGTCA  550

seq1  GACTGAAATTGGTTTTCTCCGTAACAAAATAAGACAGATGGTTATTGAGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTGAAATTGGTTTTCTCCGTAACAAAATAAGACAGATGGTTATTGAGG  600

seq1  AAGATACTTTTTGTGTATCTCTTCATCTGGGATAAGTCCTGGGATGGTAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATACTTTTTGTGTATCTCTTCATCTGGGATAAGTCCTGGGATGGTAA  650

seq1  ATTTAATCTATTATGTTAAATTAAAGTAAACTGGAATACTTGCATAAGTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTAATCTATTATGTTAAATTAAAGTAAACTGGAATACTTGCATAAGTA  700

seq1  TTCAGATTTATGTA-TTTTATTTTCTG-TTTCTATTAGCACTACATCTTA  748
      |||||||||||||| |||||||||||| ||||||||||||||||||||||
seq2  TTCAGATTTATGTATTTTTATTTTCTGTTTTCTATTAGCACTACATCTTA  750

seq1  ACATTTGATAAGATTATAACATTTAAAAGCCGGGCGTGGTGGTGCACGCC  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTTGATAAGATTATAACATTTAAAAGCCGGGCGTGGTGGTGCACGCC  800

seq1  TTTAATCCCAGCACTCAGGAGGCAGAGGTAGGCGGATTTCTGAGTTCGAG  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAATCCCAGCACTCAGGAGGCAGAGGTAGGCGGATTTCTGAGTTCGAG  850

seq1  GCCAGCC-TGGTCTACAAAGTGAGTTCCAGGACAGCCA-GGGTTATACAG  896
      ||||||| |||||| ||||||||||||||||||||||| |||||||||||
seq2  GCCAGCCTTGGTCTCCAAAGTGAGTTCCAGGACAGCCAGGGGTTATACAG  900

seq1  AGAAACCCTGTCTCAAACAAACAAACAAACAAACAAACAAACAAAAGAGA  946
      |||||||||||||||| |||   ||||||| ||||||| |||||||||||
seq2  AGAAACCCTGTCTCAACCAA--CAACAAACTAACAAAC-AACAAAAGAGA  947

seq1  TTATAACATTTAAAAATTGGTTTCTGGTTTACAACCCCACATTTAATAGA  996
      |||||   ||| |||||||||||||||||||||  |||||||||||||||
seq2  TTATA--CTTTCAAAATTGGTTTCTGGTTTACA--CCCACATTTAATAGA  993

seq1  TATTAATTACGTCAT-GTG-TGCAGTTATTAAGGTCATTCCAAAGATATA  1044
      ||||||||||||||| ||| ||||| ||||| || |||||| ||||   |
seq2  TATTAATTACGTCATGGTGTTGCAG-TATTAGGGCCATTCCCAAGAATAA  1042

seq1  GTAAGTAAGACA-GTACCTTTGTC-AACTAAGGCACTTAGATAACAATA-  1091
      ||| |||  ||| ||| ||| ||| | |||| | ||||||||||||||| 
seq2  GTAGGTAGAACACGTAACTTGGTCTACCTAAAG-ACTTAGATAACAATAC  1091

seq1  CAGTGA-ATGCCTGTA-TATAG-AGAGCCTG  1119
      || ||| ||||||||| ||||| ||||||||
seq2  CATTGATATGCCTGTATTATAGAAGAGCCTG  1122