BAC Information

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BAC

Clone NameB6Ng01-077J10
Chromosome10 (Build37)
Map Location 53,120,046 - 53,276,750
singlet/doubletdoublet
Overlap geneEG432460, Mcm9
Upstream geneNepn, D10Ertd438e, EG629689, Zfa, Slc35f1, Pln
Downstream geneAsf1a, LOC100042554, 4930589M24Rik, Man1a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-077J10.bB6Ng01-077J10.g
ACCDH893522DH893523
length1,158983
definitionDH893522|Mus musculus domesticus DNA, BAC clone: B6Ng01-077J10, 5' end.DH893523|Mus musculus domesticus DNA, BAC clone: B6Ng01-077J10, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(53,120,046 - 53,121,238)(53,276,206 - 53,276,750)
sequence
gaattcatcaaaggtttggcagtgccttccacccaagtacacagaatacc
tccccacctactcatggggggcttgactgagtaccttgctttagcaaatt
gaagctagatgtgatacaagcagaggctgttgttgtttatctttacttct
tgaggcaagagctctctttgcagcctaggctgccctggaacttagtatgt
accccaggctggcctctttccagtacagccatcttaatgctccatcctac
tgagtgctggagttactgctataggctcccatgccctgaagaagagactt
ttttttaaaaagtggtttttcactgcttttgctctttgcaatctactgcc
ttgccactgatttaaggatggggagagaaaacagaaaactgaccaaaacc
ttgagataaaaatatttgctgtgctaggcttctaaaattggtgcgtggtt
gttacttggcacggttgcaacagagacctgacagcacaacgagttcagca
ctcctccttttccctgcatttcatcctacagccatgcatgctgctctcaa
catttctcaaagttctagagctgctccatctaaatgttttaggttgtcta
tggaaataagccaatcagttaggagaatgttcttttttagcacgatcagt
gggactgttgctagtgcccgccgagaattctgtacaaccgggagcgagtt
tagtccgtgttcctgtggagagagccctgtgcctgtagcatgcactctgg
gacgactcaagaatctgtgctgtgctggccgtaaagatggctgtccttgt
attttccagtgagatctccctgtcagcctattaggaacatttttgactgt
tttcagttacagggtggagagcgtatctttgtaaatgagtggttcacatc
ctttagacagacactgtctggaactggagtgagctctaaaatggccctga
aactcagccaaatacacggtactccaaagcaatgcgatcagttaccttgc
agcttgcattttatttacaaattccctcctagtcatttcctatatcattt
gtcattctgttttctcggtttgtaactacagttgtctttgagaaggtagg
agtgttgaggcaggtccatctgcagtcagctgctggaaccactacggcga
ctgactca
gaattcttccccatagaacttcagcggctctaaggacacagttatatata
gctagggatatctagactctctgttcatctctgcagtagattctccaact
tctccagagaatgataggtacttccaaatggtgattatattatttatgtc
ttgattctttgtgtttttaaatttcattgtaatatcacaaggtgcttttg
agttagtagctaactggcccagtgaccagtgtttctctgccatctacttg
gtagtgagagccagtggatactccgcctagggtcacagtaactcgtgtgt
tcattcttcatacttattactgaattgcttaggaggaagccagattcgtt
tcaacagtagatcatgtaatattttgggttcagcttttttttaattagat
attttctttatatacattacaaatgctatcccgaaagttccctataccct
ctctccgccctgctcccctacccacccactcccgcttcttggccctagcg
ttcccctgtactgaggcatataaagtttgcaagaccaaagggcctctctt
cccaatgatggccgactaggccatcttctgctacatatgcagctagagac
acgagttctgggggtactgattagttcatattgttgttccacctataggg
ttgcagaccccttcagctccttgggtgctttctctagcttctccattggg
ggccccgtgttccatcctatagctgactgtgagcatccacttctgcattt
gccaggcactggcatagcctcatatgagacagctataacagggtcccttc
agcaaaatctttctggcatatgcaatagtgtctgggtttggtggctgatt
atgggatggatccccaggtggggtagtctctagatagtccatcctttcgt
cttagctccaaactttgtctctgtaacctctttcatgggtattttgttcc
ctattctaggaggatgagtatcacccattggtt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_53120046_53121238
seq2: B6Ng01-077J10.b_46_1203

seq1  GAATTCATCAAAGGTTTGGCAGTGCCTTCCACCCAAGTACACAGAATACC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATCAAAGGTTTGGCAGTGCCTTCCACCCAAGTACACAGAATACC  50

seq1  TCCCCACCTACTCATGGGGGGCTTGACTGAGTACCTTGCTTTAGCAAATT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCACCTACTCATGGGGGGCTTGACTGAGTACCTTGCTTTAGCAAATT  100

seq1  GAAGCTAGATGTGATACAAGCAGAGGCTGTTGTTGTTTATCTTTACTTCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCTAGATGTGATACAAGCAGAGGCTGTTGTTGTTTATCTTTACTTCT  150

seq1  TGAGGCAAGAGCTCTCTTTGCAGCCTAGGCTGCCCTGGAACTTAGTATGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGCAAGAGCTCTCTTTGCAGCCTAGGCTGCCCTGGAACTTAGTATGT  200

seq1  ACCCCAGGCTGGCCTCTTTCCAGTACAGCCATCTTAATGCTCCATCCTAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCCAGGCTGGCCTCTTTCCAGTACAGCCATCTTAATGCTCCATCCTAC  250

seq1  TGAGTGCTGGAGTTACTGCTATAGGCTCCCATGCCCTGAAGAAGAGACTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTGCTGGAGTTACTGCTATAGGCTCCCATGCCCTGAAGAAGAGACTT  300

seq1  TTTTTTAAAAAGTGGTTTTTCACTGCTTTTGCTCTTTGCAATCTACTGCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTAAAAAGTGGTTTTTCACTGCTTTTGCTCTTTGCAATCTACTGCC  350

seq1  TTGCCACTGATTTAAGGATGGGGAGAGAAAACAGAAAACTGACCAAAACC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCCACTGATTTAAGGATGGGGAGAGAAAACAGAAAACTGACCAAAACC  400

seq1  TTGAGATAAAAATATTTGCTGTGCTAGGCTTCTAAAATTGGTGCGTGGTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGATAAAAATATTTGCTGTGCTAGGCTTCTAAAATTGGTGCGTGGTT  450

seq1  GTTACTTGGCACGGTTGCAACAGAGACCTGACAGCACAACGAGTTCAGCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTACTTGGCACGGTTGCAACAGAGACCTGACAGCACAACGAGTTCAGCA  500

seq1  CTCCTCCTTTTCCCTGCATTTCATCCTACAGCCATGCATGCTGCTCTCAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTCCTTTTCCCTGCATTTCATCCTACAGCCATGCATGCTGCTCTCAA  550

seq1  CATTTCTCAAAGTTCTAGAGCTGCTCCATCTAAATGTTTTAGGTTGTCTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTCTCAAAGTTCTAGAGCTGCTCCATCTAAATGTTTTAGGTTGTCTA  600

seq1  TGGAAATAAGCCAATCAGTTAGGAGAATGTTCTTTTTTAGCACGATCAGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAAATAAGCCAATCAGTTAGGAGAATGTTCTTTTTTAGCACGATCAGT  650

seq1  GGGACTGTTGCTAGTGCCCGCCGAGAATTCTGTACAACCGGGAGCGAGTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGACTGTTGCTAGTGCCCGCCGAGAATTCTGTACAACCGGGAGCGAGTT  700

seq1  TAGTCCGTGTTCCTGTGGAGAGAGCCCTGTGCCTGTAGCATGCACTCTGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTCCGTGTTCCTGTGGAGAGAGCCCTGTGCCTGTAGCATGCACTCTGG  750

seq1  GACGACTCAAGAATCTGTGCTGTGCTGGCCGTAAAGATGGCTGTCCTTGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACGACTCAAGAATCTGTGCTGTGCTGGCCGTAAAGATGGCTGTCCTTGT  800

seq1  ATTTTCCAGTGAGATCTCCCTGTCAGCCTATTAGGAACATTTTTGACTGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTCCAGTGAGATCTCCCTGTCAGCCTATTAGGAACATTTTTGACTGT  850

seq1  TTTCAGTTACAGGGTGGAGAGCGTATCTTTGTAAATGAGTGGTTCACATC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAGTTACAGGGTGGAGAGCGTATCTTTGTAAATGAGTGGTTCACATC  900

seq1  CTTTAGACAGACACTGTCTGGAACTGGAGTGAAGCTCTAAAAATGGCCCT  950
      ||||||||||||||||||||||||||||||| |||||| |||||||||||
seq2  CTTTAGACAGACACTGTCTGGAACTGGAGTG-AGCTCT-AAAATGGCCCT  948

seq1  GAAAACTCAGCCAAATACACGGTACTCCAAAAGCAAATGCGATCAGGTTA  1000
      | |||||||||||||||||||||||||| ||||| |||||||||| ||||
seq2  G-AAACTCAGCCAAATACACGGTACTCC-AAAGC-AATGCGATCA-GTTA  994

seq1  CCTTGCAGCTTGCATTTTATTTACAAATTTCCCTCCTAGTTCATTTTCCT  1050
      ||||||||||||||||||||||||||| ||||||||||| ||| ||||||
seq2  CCTTGCAGCTTGCATTTTATTTACAAA-TTCCCTCCTAG-TCA-TTTCCT  1041

seq1  ATATTCATTTTGTCATTTCTTGTTTTTCTCGTGTTTTGTTAACTACAGTT  1100
      ||| ||| ||||||| ||||   |||||||| ||||   |||||||||||
seq2  ATA-TCA-TTTGTCA-TTCT--GTTTTCTCG-GTTT--GTAACTACAGTT  1083

seq1  GTCTTTGAAGACAGGGTAAGGAGTGTTGAGGCAGGGTCTCATCCTGCAGT  1150
      ||||||   || | ||| ||||||||||||||| |||| ||| |||||||
seq2  GTCTTT---GAGAAGGT-AGGAGTGTTGAGGCA-GGTC-CAT-CTGCAGT  1126

seq1  CCAGGCTGGCCTGGAAACCACTACGGAGCCCAGACTGAGCTCA  1193
      |   ||||  |||| |||||||||||      |||||| ||||
seq2  C--AGCTG--CTGG-AACCACTACGG-----CGACTGA-CTCA  1158

seq1: chr10_53276206_53276750
seq2: B6Ng01-077J10.g_70_614 (reverse)

seq1  AGGCCCTTTGGTCTTGCAAACTTTATATGCCTCAGTACAGGGGAACGCTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCCCTTTGGTCTTGCAAACTTTATATGCCTCAGTACAGGGGAACGCTA  50

seq1  GGGCCAAGAAGCGGGAGTGGGTGGGTAGGGGAGCAGGGCGGAGAGAGGGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCCAAGAAGCGGGAGTGGGTGGGTAGGGGAGCAGGGCGGAGAGAGGGT  100

seq1  ATAGGGAACTTTCGGGATAGCATTTGTAATGTATATAAAGAAAATATCTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGGGAACTTTCGGGATAGCATTTGTAATGTATATAAAGAAAATATCTA  150

seq1  ATTAAAAAAAAGCTGAACCCAAAATATTACATGATCTACTGTTGAAACGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAAAAAAAGCTGAACCCAAAATATTACATGATCTACTGTTGAAACGA  200

seq1  ATCTGGCTTCCTCCTAAGCAATTCAGTAATAAGTATGAAGAATGAACACA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGGCTTCCTCCTAAGCAATTCAGTAATAAGTATGAAGAATGAACACA  250

seq1  CGAGTTACTGTGACCCTAGGCGGAGTATCCACTGGCTCTCACTACCAAGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAGTTACTGTGACCCTAGGCGGAGTATCCACTGGCTCTCACTACCAAGT  300

seq1  AGATGGCAGAGAAACACTGGTCACTGGGCCAGTTAGCTACTAACTCAAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGGCAGAGAAACACTGGTCACTGGGCCAGTTAGCTACTAACTCAAAA  350

seq1  GCACCTTGTGATATTACAATGAAATTTAAAAACACAAAGAATCAAGACAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACCTTGTGATATTACAATGAAATTTAAAAACACAAAGAATCAAGACAT  400

seq1  AAATAATATAATCACCATTTGGAAGTACCTATCATTCTCTGGAGAAGTTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAATATAATCACCATTTGGAAGTACCTATCATTCTCTGGAGAAGTTG  450

seq1  GAGAATCTACTGCAGAGATGAACAGAGAGTCTAGATATCCCTAGCTATAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAATCTACTGCAGAGATGAACAGAGAGTCTAGATATCCCTAGCTATAT  500

seq1  ATAACTGTGTCCTTAGAGCCGCTGAAGTTCTATGGGGAAGAATTC  545
      |||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAACTGTGTCCTTAGAGCCGCTGAAGTTCTATGGGGAAGAATTC  545