BAC Information

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BAC

Clone NameB6Ng01-079J10
Chromosome10 (Build37)
Map Location 81,535,758 - 81,632,444
singlet/doubletdoublet
Overlap gene4933439G19Rik, BC024063, AU041133
Upstream geneThop1, Creb3l3, Map2k2, Zbtb7a, Pias4, Eef2, Dapk3, Itgb1bp3, Atcay, 9130206N08Rik, Matk, Mrpl54, Apba3, Tjp3, Pip5k1c, 2510012J08Rik, Tbxa2r, Gipc3, Hmg20b, F630110N24Rik, 4930404N11Rik, Fzr1, Dohh, 2210404O07Rik, Nfic, Brunol5, Ncln, Edg6, Gna15, Gna11, Aes, Tle2, Tle6, BC025920, Sirt6, Ankrd24, LOC100040916, EG666448, EG666458, LOC666711, LOC382388, LOC100040944, EG210583, EG666738, EG666501, 1700123A16Rik, LOC666753, EG666537, BC062127, EG666542, EG666548, EG666790, LOC666571, AL117821, BC062115
Downstream geneLOC100042712, B230315N10Rik, LOC100042718, EG237412, LOC666611, Gm1553, LOC544716, 1190007I07Rik, Tdg, Glt8d2, Hcfc2, Nfyb, 1700028I16Rik, Txnrd1, Eid3, EG216185, Chst11
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-079J10.bB6Ng01-079J10.g
ACCDH894954DH894955
length5111,130
definitionDH894954|Mus musculus domesticus DNA, BAC clone: B6Ng01-079J10, 5' end.DH894955|Mus musculus domesticus DNA, BAC clone: B6Ng01-079J10, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(81,535,758 - 81,536,274)(81,631,286 - 81,632,444)
sequence
tgtttagctctgtgccccattttttaaattgggttatttgggttgttggt
gtttacctgcttgtattctttatacattttggatattattcttctgtcag
atgtagggttggtgaagatctttctcaatctgtgggctgctgttttgtcc
agtagacagtatcctttgtcttacagatgctttgtagtttcatgaggtct
catttattaattgttgatcttagagcttgagccattggtgttctgtccat
gaaattgtctcaatatgttcaagggtatttcccattttctcttctatgag
atttaggcaaccccttttatattgaggttcttgatccatttggacttgat
atacatatatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtatttgcattc
ttccacatgcacacacccagttagtccagcaccttttgttgaaaactatt
tcctggaattctatcttgtgagagcatcaactgttcagcagtggtaaatt
tatagataaat
gaattctacatctggatagcagatagcaagaaaagagaaagccactgggt
ctggtttggatcctgaaacctcaaagcctacctccagtgacaattttctt
ccaacaagaccgtccctactccgaggaggccacccttcctaatcccactc
aatcagagagtcactctctgatgaccaattattcaatcataagggcgcat
gagggccactctcactcaaaccaccaaagtaacaccttttaaatttcatt
tttttgtgtatagatcactactctggtttctatttgcttctatttttgaa
ggattcccagtaattaagaatttgacttgatgtttctcaaatagttgtta
atttatttgagagaaatacatcatgtatcccaggcttgcctggccctatg
tcaactgagaattgaatttaaaacccaaatctgcctctaccacagtagtg
ctgggaatacaggtatgcaggtccgaaaagaaaagagaggcaaggggatt
catggcttaatagagcccagccttttattgggtgttgcaaatgtagaggg
aactatgccctgatcatgacttctgcatttgcaaacagaggggaggtgcc
cagaaggatgttaaaaggtttccaatttttgtctacacttgaagttacca
gtgaacagttagctaataaacttcaggtgattgataaatgatctgattag
tgttcaattgggatgcacagaccacagcaaccaaaaatatagttaaaagt
gatttccttttagcaaccaaattatgtagttacactagttcaaggagaac
agaagagctgggcaaattttgtggccctgccttaactggttggttttttg
ggtttttttgtttttgtttttgtttttgatattgttttctggatgagatg
ggataaaaaagtatgagttatcctctgtttgccttcaatataaatgtatt
cttcttgaaaacatggaaccataaagcctgatacatgttaaaatttattt
tgagatatattacttcattggtcttcgctttcatccttctgaccttctat
ataacctcttgctttcaatcaggcctccttgcctgtctcctacttgattg
gacctagtatcctacggactttccgttctg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_81535758_81536274
seq2: B6Ng01-079J10.b_43_559

seq1  GAATTCTGTTTAGCTCTGTGCCCCATTTTTTAAATTGGGTTATTTGGGTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGTTTAGCTCTGTGCCCCATTTTTTAAATTGGGTTATTTGGGTT  50

seq1  GTTGGTGTTTACCTGCTTGTATTCTTTATACATTTTGGATATTATTCTTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGGTGTTTACCTGCTTGTATTCTTTATACATTTTGGATATTATTCTTC  100

seq1  TGTCAGATGTAGGGTTGGTGAAGATCTTTCTCAATCTGTGGGCTGCTGTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCAGATGTAGGGTTGGTGAAGATCTTTCTCAATCTGTGGGCTGCTGTT  150

seq1  TTGTCCAGTAGACAGTATCCTTTGTCTTACAGATGCTTTGTAGTTTCATG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCCAGTAGACAGTATCCTTTGTCTTACAGATGCTTTGTAGTTTCATG  200

seq1  AGGTCTCATTTATTAATTGTTGATCTTAGAGCTTGAGCCATTGGTGTTCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTCTCATTTATTAATTGTTGATCTTAGAGCTTGAGCCATTGGTGTTCT  250

seq1  GTCCATGAAATTGTCTCAATATGTTCAAGGGTATTTCCCATTTTCTCTTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCATGAAATTGTCTCAATATGTTCAAGGGTATTTCCCATTTTCTCTTC  300

seq1  TATGAGATTTAGGCAACCCCTTTTATATTGAGGTTCTTGATCCATTTGGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGAGATTTAGGCAACCCCTTTTATATTGAGGTTCTTGATCCATTTGGA  350

seq1  CTTGATATACATATATGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTATTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGATATACATATATGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTATTT  400

seq1  GCATTCTTCCACATGCACACACCCAGTTAGTCCAGCACCATTTGTTGAAA  450
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  GCATTCTTCCACATGCACACACCCAGTTAGTCCAGCACCTTTTGTTGAAA  450

seq1  ACTATTTCCTGGAATTCAATCTTGTGAGAGCATCAACTGTTCAGCAGTGG  500
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  ACTATTTCCTGGAATTCTATCTTGTGAGAGCATCAACTGTTCAGCAGTGG  500

seq1  TAAATAAAGAGATAAAT  517
      |||||  | ||||||||
seq2  TAAATTTATAGATAAAT  517

seq1: chr10_81631286_81632444
seq2: B6Ng01-079J10.g_68_1197 (reverse)

seq1  CAGAACTGGAAAGTCCTGTAGATAACCTTAGGTCAAATTCAAGTAGGAGA  50
      |||||| ||||||||| ||||   ||  |||||| || ||||||||||||
seq2  CAGAAC-GGAAAGTCC-GTAGGATAC--TAGGTCCAA-TCAAGTAGGAGA  45

seq1  AACAAAGCAAAGGGAGGCCATGGATTTGAAAGCAAAGAGGTTATATAGAG  100
          | ||||  ||||||| ||   |||||||| ||||||||||||||| 
seq2  ---CAGGCAA--GGAGGCC-TG--ATTGAAAGC-AAGAGGTTATATAGAA  86

seq1  GGTCAGGAGAGATGAAAGCGAAAGACCAAATGAAGTAATTATAATCTCAA  150
      |||||| || |||||||||| |||||| |||||||||| ||| ||||| |
seq2  GGTCAGAAG-GATGAAAGCG-AAGACC-AATGAAGTAA-TAT-ATCTC-A  130

seq1  AAATAAATTTTAAAACATGGTATCAGGCTTTATGGTTCCATGTTCTCAAG  200
      |||||||||||  ||||| ||||||||||||||||||||||||| |||||
seq2  AAATAAATTTT--AACAT-GTATCAGGCTTTATGGTTCCATGTTTTCAAG  177

seq1  -AGAATAACAATTTATATTGGAGGCAAACAGAGGATTAACTCATAC-TTT  248
       ||||||   |||||||||| |||||||||||||| |||||||||| |||
seq2  AAGAATA--CATTTATATTGAAGGCAAACAGAGGA-TAACTCATACTTTT  224

seq1  TTATCCCATTCTCATCCAGAAAACAAATATCAAAAAACAAAAACAAAAAC  298
      |||||||| ||||||||||||||| |||||| ||||||||||||||||||
seq2  TTATCCCA-TCTCATCCAGAAAAC-AATATC-AAAAACAAAAACAAAAAC  271

seq1  AAAAAAACCCAAAAAACCAACCAGTT-AGGCAGGGCCACAAAAATTTGCC  347
      |||||||||||||||||||||||||| |||||||||||| ||||||||||
seq2  AAAAAAACCCAAAAAACCAACCAGTTAAGGCAGGGCCAC-AAAATTTGCC  320

seq1  CAGCTCTTCTGTTCTCCTTGAACTAGTGTAACTACATAATTTGGTTGCTA  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTCTTCTGTTCTCCTTGAACTAGTGTAACTACATAATTTGGTTGCTA  370

seq1  AAAGGAAATTCACTTTTTAACTATATTTTTGGTTGCTGTGGTCTGTGCAT  447
      |||||||| |||| ||||||||||||||||||||||||||||||||||||
seq2  AAAGGAAA-TCAC-TTTTAACTATATTTTTGGTTGCTGTGGTCTGTGCAT  418

seq1  CCCAATTGAACACTAATCAGATCATTTATCAATCACCTGAAGTTTATTAG  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAATTGAACACTAATCAGATCATTTATCAATCACCTGAAGTTTATTAG  468

seq1  CTAACTGTTCACTGGTAACTTCAAGTGTAGACAAAAATTGGAAACCTTTT  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAACTGTTCACTGGTAACTTCAAGTGTAGACAAAAATTGGAAACCTTTT  518

seq1  AACATCCTTCTGGGCACCTCCCCTCTGTTTGCAAATGCAGAAGTCATGAT  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATCCTTCTGGGCACCTCCCCTCTGTTTGCAAATGCAGAAGTCATGAT  568

seq1  CAGGGCATAGTTCCCTCTACATTTGCAACACCCAATAAAAGGCTGGGCTC  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGCATAGTTCCCTCTACATTTGCAACACCCAATAAAAGGCTGGGCTC  618

seq1  TATTAAGCCATGAATCCCCTTGCCTCTCTTTTCTTTTCGGACCTGCATAC  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTAAGCCATGAATCCCCTTGCCTCTCTTTTCTTTTCGGACCTGCATAC  668

seq1  CTGTATTCCCAGCACTACTGTGGTAGAGGCAGATTTGGGTTTTAAATTCA  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTATTCCCAGCACTACTGTGGTAGAGGCAGATTTGGGTTTTAAATTCA  718

seq1  ATTCTCAGTTGACATAGGGCCAGGCAAGCCTGGGATACATGATGTATTTC  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTCAGTTGACATAGGGCCAGGCAAGCCTGGGATACATGATGTATTTC  768

seq1  TCTCAAATAAATTAACAACTATTTGAGAAACATCAAGTCAAATTCTTAAT  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCAAATAAATTAACAACTATTTGAGAAACATCAAGTCAAATTCTTAAT  818

seq1  TACTGGGAATCCTTCAAAAATAGAAGCAAATAGAAACCAGAGTAGTGATC  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTGGGAATCCTTCAAAAATAGAAGCAAATAGAAACCAGAGTAGTGATC  868

seq1  TATACACAAAAAAATGAAATTTAAAAGGTGTTACTTTGGTGGTTTGAGTG  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATACACAAAAAAATGAAATTTAAAAGGTGTTACTTTGGTGGTTTGAGTG  918

seq1  AGAGTGGCCCTCATGCGCCCTTATGATTGAATAATTGGTCATCAGAGAGT  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTGGCCCTCATGCGCCCTTATGATTGAATAATTGGTCATCAGAGAGT  968

seq1  GACTCTCTGATTGAGTGGGATTAGGAAGGGTGGCCTCCTCGGAGTAGGGA  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTCTCTGATTGAGTGGGATTAGGAAGGGTGGCCTCCTCGGAGTAGGGA  1018

seq1  CGGTCTTGTTGGAAGAAAATTGTCACTGGAGGTAGGCTTTGAGGTTTCAG  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGTCTTGTTGGAAGAAAATTGTCACTGGAGGTAGGCTTTGAGGTTTCAG  1068

seq1  GATCCAAACCAGACCCAGTGGCTTTCTCTTTTCTTGCTATCTGCTATCCA  1147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCCAAACCAGACCCAGTGGCTTTCTCTTTTCTTGCTATCTGCTATCCA  1118

seq1  GATGTAGAATTC  1159
      ||||||||||||
seq2  GATGTAGAATTC  1130