BAC Information

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BAC

Clone NameB6Ng01-080C06
Chromosome10 (Build37)
Map Location 49,773,181 - 49,774,249
singlet/doubletsinglet
Overlap genenone
Upstream geneGrik2
Downstream geneLOC629652, Ascc3, Sim1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-080C06.bB6Ng01-080C06.g
ACCDH895360DH895361
length1,2291,165
definitionDH895360|Mus musculus domesticus DNA, BAC clone: B6Ng01-080C06, 5' end.DH895361|Mus musculus domesticus DNA, BAC clone: B6Ng01-080C06, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcaattcagcaacatgactgctctgccgaaagaccacacacctttg
atccatctgaatggaataaagacatgcccttagtacaaacctttatggta
aaattagtttgtagaaggaaacagccatgttggaaagtgacttctaattg
gagggcagacaaattcaccaatttgagaaagatttgaaagaatgagtcag
agagaggatatatccaacttccaagagaacagcacagaagagaaaagtta
ttcaagaacagtacagtgaaagagagtctgtcaggtttgttctgtccatc
gagttcagttgagtgaagtcagttcagtcagtcagtaaggagtcagtaca
cttagtgcagtgcagaggagttgagttaattcctcaagttatacagttca
atgtaggccagcagaggtagttgaatccagagaattagaagtcagaaaat
tagaacaaattgccagagttagtttgaggcagagcagagcaattcagaaa
gaaggtgaaagaatccagattcaatcagtgggcttaaggaggagtttgag
acagaatagctgagttgaaccaccaagacaaagttcagaaagaactaaaa
agggtaagcttatttagcattaagcctctgagacataaattacataaaga
gaataaaagtgactttcacaaatacacttgtacctcttctgatgttttct
ccttaaccacttgtttctatatttctacttaggaaaggctgataaggagc
tccttgctttgagtaactttagttggaaagccacactgatgtgtctggaa
gcttcctttcaccatagctggccctcagcatgtgagagtcacatctcctt
tgtgatgtgaggcatttcactctgacaactctctcagccacttgggaata
ctccagattgaaattcttgttactgtgacacttaacctcctccacttcat
catggattgctaccctcatgttttcctagaactttcttaaccttcctcta
gaagctttctctatgttcctgggtctgtgaccctttcctgcccctctctg
aagctatttgtctaccctctccttgtaccctcctgctcaatagtttctag
tttcctgccttttcccaagaagctctagtcctacagcttcccttatgccc
taatggacctccgcagaatttgacccacacttggtagattcctgttcctt
acgttctactctccctaagtcaatctttt
gaattctcacctgaggaataccgaatggcagagaagcacttgaaaaaatg
ttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgagat
tccacctcacaccagtcagaatggctaagatcaaaaattcaggtgacagc
agatgctggcgtggatgtggagaaagaggaacactcctccattgttggtg
ggagtgcaggcttgtacaaccactctggaaatcagtctggcggttcctca
gaaaactggacatagtactaccggaggatccagcaatacctctcctgggc
atatatccagaagatgccccaacaggtaagaaggacacatgctccactat
gttcatagcagccttatttataatagccagaagctggaaagaacctagat
gcccctcaacagaggaatggatacagaaaatgtggtacatctacacaatg
gagtactactcagctattaaaaagaatgaatttatgaaattcctagccaa
atggatggacctggagggcatcatcctgagtgaggtaacacattcacaaa
gaaactcacacaatatgtattcactgataagtggatattagccccaaacc
taggatacccatgatataagatataatttgctaaacacatgaaactcaag
aagaatgaagactgaagtgtggacactatgcccctccttagatttgggaa
caaaacacccatggaaggagttacagagacaaagtttggagctgagatga
aaggatggaccatgtagagactgccatatccagggatccaccccataatc
agcatccaaacgctgacaccaattgcatacactagcaagattttattgaa
aggacccagatgtagctgtctcttgtgagactatgccggggcctagcaaa
cacagaagtggatgctcacagtcagctaatggctggatcatagggctccc
aatggaggagctagagaagtagccatggagctaaagggatctgcaaccta
tagtggacacatcatgactaaccagtaccccggagctcttgactctagct
gcattatatatcaaagatgctagtcgccatcactggaagagaggcccatg
gacttgcaacttttattgccattcaggaacccaggccaaaaggggattgg
tggccgtggaagtga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_49773181_49774249
seq2: B6Ng01-080C06.b_219_1273

seq1  GAGAAAGATTTGAAAGAATGAGTCAGAGAGAGGATATATCCAACTTCCAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAAGATTTGAAAGAATGAGTCAGAGAGAGGATATATCCAACTTCCAA  50

seq1  GAGAACAGCACAGAAGAGAAAAGTTATTCAAGAACAGTACAGTGAAAGAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAACAGCACAGAAGAGAAAAGTTATTCAAGAACAGTACAGTGAAAGAG  100

seq1  AGTCTGTCAGGTTTGTTCTGTCCATCGAGTTCAGTTGAGTGAAGTCAGTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTGTCAGGTTTGTTCTGTCCATCGAGTTCAGTTGAGTGAAGTCAGTT  150

seq1  CAGTCAGTCAGTAAGGAGTCAGTACACTTAGTGCAGTGCAGAGGAGTTGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTCAGTCAGTAAGGAGTCAGTACACTTAGTGCAGTGCAGAGGAGTTGA  200

seq1  GTTAATTCCTCAAGTTATACAGTTCAATGTAGGCCAGCAGAGGTAGTTGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAATTCCTCAAGTTATACAGTTCAATGTAGGCCAGCAGAGGTAGTTGA  250

seq1  ATCCAGAGAATTAGAAGTCAGAAAATTAGAACAAATTGCCAGAGTTAGTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCAGAGAATTAGAAGTCAGAAAATTAGAACAAATTGCCAGAGTTAGTT  300

seq1  TGAGGCAGAGCAGAGCAATTCAGAAAGAAGGTGAAAGAATCCAGATTCAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGCAGAGCAGAGCAATTCAGAAAGAAGGTGAAAGAATCCAGATTCAA  350

seq1  TCAGTGGGCTTAAGGAGGAGTTTGAGACAGAATAGCTGAGTTGAACCACC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTGGGCTTAAGGAGGAGTTTGAGACAGAATAGCTGAGTTGAACCACC  400

seq1  AAGACAAAGTTCAGAAAGAACTAAAAAGGGTAAGCTTATTTAGCATTAAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACAAAGTTCAGAAAGAACTAAAAAGGGTAAGCTTATTTAGCATTAAG  450

seq1  CCTCTGAGACATAAATTACATAAAGAGAATAAAAGTGACTTTCACAAATA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTGAGACATAAATTACATAAAGAGAATAAAAGTGACTTTCACAAATA  500

seq1  CACTTGTACCTCTTCTGATGTTTTCTCCTTAACCACTTGTTTCTATATTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTGTACCTCTTCTGATGTTTTCTCCTTAACCACTTGTTTCTATATTT  550

seq1  CTACTTAGGAAAGGCTGATAAGGAGCTCCTTGCTTTGAGTAACTTTAGTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACTTAGGAAAGGCTGATAAGGAGCTCCTTGCTTTGAGTAACTTTAGTT  600

seq1  GGAAAGCCACACTGATGTGTCTGGAAGCTTCCTTTCACCATAGCTGGCCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAGCCACACTGATGTGTCTGGAAGCTTCCTTTCACCATAGCTGGCCC  650

seq1  TCAGCATGTGAGAGTCACATCTCCTTTGTGATGTGAGGCATTTCACTCTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCATGTGAGAGTCACATCTCCTTTGTGATGTGAGGCATTTCACTCTG  700

seq1  ACAACTCTCTCAGGCCACTTGGGAATACTCCAGATTGAAATTCTTGTTAC  750
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  ACAACTCTCTCA-GCCACTTGGGAATACTCCAGATTGAAATTCTTGTTAC  749

seq1  TGTGACACTTAACCTCCTCCACTTCATCATGGATTGCTACCCTCATGTTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  TGTGACACTTAACCTCCTCCACTTCATCATGGATTGCTACCCTCATG-TT  798

seq1  TTCCTAGAACTTTCTTAACCTTCCTCTAGAAGCTTTCTCTATGTTCCTGG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTAGAACTTTCTTAACCTTCCTCTAGAAGCTTTCTCTATGTTCCTGG  848

seq1  GTCTGTGACCCTTTCCTTGCCCCTCCTCTTGGAGCTATTTGGTCTA-CCT  899
      |||||||||||||||| ||||||| ||| || |||||||| ||||| |||
seq2  GTCTGTGACCCTTTCC-TGCCCCT-CTC-TGAAGCTATTT-GTCTACCCT  894

seq1  CTCCTTGTACCCTCCTGGCTCATAAGTTTCTAGTTTCCTTGCCTTTTCCC  949
      |||||||||||||||| |||||  |||||||||||||| |||||||||||
seq2  CTCCTTGTACCCTCCT-GCTCAATAGTTTCTAGTTTCC-TGCCTTTTCCC  942

seq1  -AGGAGCTCCTAAGTCCTACAGCTTCTC-TATGCCTTAAT-GACTTCCGC  996
       || |||||   |||||||||||||| | |||||| |||| ||| |||||
seq2  AAGAAGCTC--TAGTCCTACAGCTTCCCTTATGCCCTAATGGACCTCCGC  990

seq1  AGTATTGGAACCCACACTCTGGTGAAGTTCCTGTCTCTTAGCTGTCTAAC  1046
      || ||| | ||||||||| |||| |  |||||||  |||| |  ||| ||
seq2  AGAATTTG-ACCCACACT-TGGT-AGATTCCTGTTCCTTA-CGTTCT-AC  1035

seq1  TCTCCCTAAGTCAGAGTTCTTTT  1069
      |||||||||||||    ||||||
seq2  TCTCCCTAAGTCA---ATCTTTT  1055