BAC Information

Click to search

BAC

Clone NameB6Ng01-080F13
Chromosome10 (Build37)2 (Build37)
Map Location 104,053,972 - 104,054,979117,209,472 - 117,210,673
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneEG627488, EG667692, EG667695, LOC100043292
Downstream geneLOC100042383, Tmtc2, EG627573
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-080F13.bB6Ng01-080F13.g
ACCDH895511DH895512
length1,1401,192
definitionDH895511|Mus musculus domesticus DNA, BAC clone: B6Ng01-080F13, 5' end.DH895512|Mus musculus domesticus DNA, BAC clone: B6Ng01-080F13, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(104,053,972 - 104,054,979)(117,209,472 - 117,210,673)
sequence
gaattctcagctacgtctccaggaccgtgtctgtctgcatgccaccatgt
ttcctgccatgacaataatggactaaacctctgaaactgcaagtcagccc
caccccaaataaatactttcttattaaagtagttatggtcttgatgtctc
tccatagcacaaagcactgactaagactctggaatgcatttcattgataa
tcaatattgattccacaactagtctgtatgataagaacttcaagtctctg
gagaaagaaattaaagaagatctcagaagatggaaagatctcccatgctc
atggattggcaggatcaatgtagtaaaaatggctatcttgccaaaagcaa
tctacagattcaatgcaatccccatcaaaattccaactcaattcttcaac
gaattagaaagagcaatctgcaaattcatctggattaacgaaaaacctag
gatagcaaaaactattctcaaggataagagaacctctggtggaatcacca
tgcctgacctaaagctgtactacagagcaattgtgataaaaaacggcatg
gtactggtatagtgacagacaagtagaccaatggaatagaattgaagacc
cagaaatgaacccacacacctatggtcacttgatctttgacaagggagct
aaaaccatccagtggaaaaaagacagcattttaaacaaatggtgctggca
caactggtggttatcatgtagaagaatgcaaattgatccattcctatctc
cttgtactaaggtcaaatctaagaggatcaaggaactccacataaaacca
gagacactgaaacttatagaagagaaagtggggaaaagccttgaagatat
gggcacagaggaaaaattcctgaatagaacagcaatggcttgtgctgtaa
gatcaggaatcgacaaatgggacctcataaattgcaaagcttctgtaagc
aaaagacaccatcaataagacaaaggctaccaacagattgtgaaaggatc
tttacctatcctaatcagatacgggactatatcatattaataaagaactc
aaaaaggtggactccagaaaacaaaaacccattaaaaatggggctcaaag
ctacagaattctcactgaggaatactgatggctggaaaga
gaattccaaatcaggaacttggaagatgaaggaaggacgtgaagcactgc
agtcatatatttctagattttaaaaaggatatgaagaaaaaaatgtattg
tatgcttcatcatgtagacccagtaacaggaaaacagcagagaagaccct
ggagagccaaaaccatgctctagtctgagagggcctgccataggatgggg
ctttctccacatggaatgacggggatcaggagaattctggtggcatttgt
cagcaggagagcacagcagtatccatatggtgctttagagctcagagccc
caccttgaggcaggcagccatttccctgatacccagaggggtgttcccat
ttcttaagtgcctgcctaattcctactcacctctctctggggtctgcttc
tcacacagctagcttgcttacagaaattcaaattaagctgtatcttaagc
tgcctggcattctcccagcataagatacaatgccatattcttactatggc
atagagagctccctgaagacccctagccagctctctatgctcatagcttc
actatgttatcttcttgtagaatatgtgctgggtatagtagccttacttc
tgtcccttgaacatgaacatgtgtctgcctcagggtcttggtacttgctt
cctcttagggactccgacctaagttctttgaacaactgcacttttctttt
ctactaatttagtacaataatattccacccatgtggctatctaattgaaa
acagaacacaactctcacaatcccatcacccattttattttcttaacagc
gttgtcactttaacaaggtatggtgttttccccctacgattacaaattga
atgtctgtactgtagaagctgtcggggagatagtctctcatgtctatatt
atacagtgttatctgtgccgtgtagatagttcctagcatcaagtcagtat
aaatagctctgactgccaccgatgaatgaagaggcttaacccacctccca
agatccacactgacttcttcatgacagtggctgtagagtggggtggagta
cctgtgaatctggaggagaagtagcctaggtattggtggaaccacctccc
acagactttagtaactcatgctattatctactacaccccaggaggaattt
ggttagacactggtccagagttccacacccatcccgtcacac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_104053972_104054979
seq2: B6Ng01-080F13.b_546_1180 (reverse)

seq1  TCTTTCCAGCTCCTGGCTATTATAAATAAGGCTGCTATGAATATAGTGGA  50
                                                        
seq2  --------------------------------------------------  0

seq1  GCATGTGTCCTTCTTACCGGTTGGGGCATCTTCTGGATATATGCCCAGAA  100
                                                        
seq2  --------------------------------------------------  0

seq1  GAGGTATTGCTGGATCCTCCGGTAGTACTATGTCCAATTTTCTGACGAAC  150
                                                        
seq2  --------------------------------------------------  0

seq1  CGCCAGACGGATTTCCAGAGTGGTTGTACAAGCCTGCAATCCCACCAACA  200
                                                        
seq2  --------------------------------------------------  0

seq1  ATGGAGGAGTGTTCCTCTTTCTCCACATCCTCGCCAGCATCTGCTGTCAC  250
                                                        
seq2  --------------------------------------------------  0

seq1  CTGAATTTTTGATCTTAGCCATTCTGACTGGTGTGAGGTGGAATCTCAGG  300
                                                        
seq2  --------------------------------------------------  0

seq1  GTTGTTTTGATTTGCATTTCCCTGATGATTAAGGATGTTGAACATTTTTT  350
                                                        
seq2  --------------------------------------------------  0

seq1  CAGGTGCTTCTCTGCCATTCGGTATTCCTCAGGTGAGAATTCTTTGTTCA  400
            |||  | |||| || |||||||||| ||||||||||| |    |
seq2  -----TCTTTCCAGCCA-TCAGTATTCCTCA-GTGAGAATTCTGT----A  39

seq1  GTTCTGAGCCCCATTTTTTAATAGGGTTATTTGATTTTCTGAAGTCCACC  450
      | | ||||||||| |||||||| ||||| |||| ||||||| ||||||||
seq2  GCTTTGAGCCCCA-TTTTTAAT-GGGTT-TTTG-TTTTCTGGAGTCCACC  85

seq1  TTCTTGAGTTCTTTATATATGTTGGATATTAGTCCCCTATCTGAATTAGG  500
      || |||||||||||||  || |  |||| ||||||| |||||| ||||||
seq2  TTTTTGAGTTCTTTATTAATAT--GATA-TAGTCCCGTATCTG-ATTAGG  131

seq1  ATAGGTAAAGATCCTTTCTCAATCTGTTGGTGGTCTTTTTGTCTTATTGA  550
      |||||||||||||||||| |||||||||||| | |  |||||||||||||
seq2  ATAGGTAAAGATCCTTTCACAATCTGTTGGTAGCC--TTTGTCTTATTGA  179

seq1  CGGTGTCTTTTGCCTTGCAGAAGCTTTGCAATTTTATGAGGTCCCATTTA  600
       ||||||||||| ||| |||||||||||||| ||||||||||||||||| 
seq2  TGGTGTCTTTTG-CTTACAGAAGCTTTGCAA-TTTATGAGGTCCCATTTG  227

seq1  TCAACTCTCTATCTTACAGCACAAGCCATTGCTGTTCTATTCAGGAATTT  650
      || | ||   ||||||||||||||||||||||||||||||||||||||||
seq2  TCGATTCCTGATCTTACAGCACAAGCCATTGCTGTTCTATTCAGGAATTT  277

seq1  TTCCCCTGTACCCATATCTTCGAGGCTTTTCCCTACTTTTTCCTCTATAA  700
      |||| |||| ||||||||||| ||||||||||| ||||| || |||||||
seq2  TTCCTCTGTGCCCATATCTTCAAGGCTTTTCCCCACTTTCTCTTCTATAA  327

seq1  GTTTCAGTGTCTCTGGTTTTATGTGGAGTTCCTTAATCCACTTAGATTTT  750
      |||||||||||||||||||||||||||||||||| |||| ||||||||| 
seq2  GTTTCAGTGTCTCTGGTTTTATGTGGAGTTCCTTGATCCTCTTAGATTTG  377

seq1  ACCTTAGTACAAGGAGATAGTAATTGATCAATTCACAATCTTCTACATGA  800
      |||||||||||||||||||| ||| ||||||||  || ||||||||||||
seq2  ACCTTAGTACAAGGAGATAGGAATGGATCAATTTGCATTCTTCTACATGA  427

seq1  TAACAGCCAGTTGTGCCAGCATGATTTGTTGAAAATGCTGTCTTTTTTTC  850
      ||||  |||||||||||||||  ||||||| ||||||||||| |||||||
seq2  TAACCACCAGTTGTGCCAGCACCATTTGTTTAAAATGCTGTC-TTTTTTC  476

seq1  CACTGGATAGTTTTAGCTCCCTTGTCAAAGATCAAGTGACCATAGGTGTG  900
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  CACTGGATGGTTTTAGCTCCCTTGTCAAAGATCAAGTGACCATAGGTGTG  526

seq1  TGGGTTCATCTCTGGATCTTCAATTCTGTTCCATTGGTCTACTTGTCTGT  950
      ||||||||| ||||| ||||||||||| ||||||||||||||||||||||
seq2  TGGGTTCATTTCTGGGTCTTCAATTCTATTCCATTGGTCTACTTGTCTGT  576

seq1  CGCTATACAAGTACCATGCAG-TTTTTATCACAATTGCTCTGTAGTACAG  999
      | |||||| |||||||||| | ||||||||||||||||||||||||||||
seq2  CACTATACCAGTACCATGCCGTTTTTTATCACAATTGCTCTGTAGTACAG  626

seq1  TTTTAGGTC  1008
       ||||||||
seq2  CTTTAGGTC  635

seq1: chr2_117209472_117210673
seq2: B6Ng01-080F13.g_69_1260

seq1  GAATTCCAAATCAGGAACTTGGAAGATGAAGGAAGGACGTGAAGCACTGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAAATCAGGAACTTGGAAGATGAAGGAAGGACGTGAAGCACTGC  50

seq1  AGTCATATATTTCTAGATTTTAAAAAGGATATGAAGAAAAAAATGTATTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCATATATTTCTAGATTTTAAAAAGGATATGAAGAAAAAAATGTATTG  100

seq1  TATGCTTCATCATGTAGACCCAGTAACAGGAAAACAGCAGAGAAGACCCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGCTTCATCATGTAGACCCAGTAACAGGAAAACAGCAGAGAAGACCCT  150

seq1  GGAGAGCCAAAACCATGCTCTAGTCTGAGAGGGCCTGCCATAGGATGGGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGAGCCAAAACCATGCTCTAGTCTGAGAGGGCCTGCCATAGGATGGGG  200

seq1  CTTTCTCCACATGGAATGACGGGGATCAGGAGAATTCTGGTGGCATTTGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCTCCACATGGAATGACGGGGATCAGGAGAATTCTGGTGGCATTTGT  250

seq1  CAGCAGGAGAGCACAGCAGTATCCATATGGTGCTTTAGAGCTCAGAGCCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCAGGAGAGCACAGCAGTATCCATATGGTGCTTTAGAGCTCAGAGCCC  300

seq1  CACCTTGAGGCAGGCAGCCATTTCCCTGATACCCAGAGGGGTGTTCCCAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCTTGAGGCAGGCAGCCATTTCCCTGATACCCAGAGGGGTGTTCCCAT  350

seq1  TTCTTAAGTGCCTGCCTAATTCCTACTCACCTCTCTCTGGGGTCTGCTTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTAAGTGCCTGCCTAATTCCTACTCACCTCTCTCTGGGGTCTGCTTC  400

seq1  TCACACAGCTAGCTTGCTTACAGAAATTCAAATTAAGCTGTATCTTAAGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACACAGCTAGCTTGCTTACAGAAATTCAAATTAAGCTGTATCTTAAGC  450

seq1  TGCCTGGCATTCTCCCAGCATAAGATACAATGCCATATTCTTACTATGGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTGGCATTCTCCCAGCATAAGATACAATGCCATATTCTTACTATGGC  500

seq1  ATAGAGAGCTCCCTGAAGACCCCTAGCCAGCTCTCTATGCTCATAGCTTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGAGAGCTCCCTGAAGACCCCTAGCCAGCTCTCTATGCTCATAGCTTC  550

seq1  ACTATGTTATCTTCTTGTAGAATATGTGCTGGGTATAGTAGCCTTACTTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTATGTTATCTTCTTGTAGAATATGTGCTGGGTATAGTAGCCTTACTTC  600

seq1  TGTCCCTTGAACATGAACATGTGTCTGCCTCAGGGTCTTGGTACTTGCTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCCCTTGAACATGAACATGTGTCTGCCTCAGGGTCTTGGTACTTGCTT  650

seq1  CCTCTTAGGGACTCCGACCTAAGTTCTTTGAACAACTGCACTTTTCTTTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTTAGGGACTCCGACCTAAGTTCTTTGAACAACTGCACTTTTCTTTT  700

seq1  CTACTAATTTAGTACAATAATATTCCACCCATGTGGCTATCTAATTGAAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACTAATTTAGTACAATAATATTCCACCCATGTGGCTATCTAATTGAAA  750

seq1  ACAGAACACAACTCTCACAATCCCATCACCCATTTTATTTTCTTAACAGC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAACACAACTCTCACAATCCCATCACCCATTTTATTTTCTTAACAGC  800

seq1  GTTGTCACTTTAACAAGGTATGGTGTTTTCCCCCTACGATTACAAATTGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGTCACTTTAACAAGGTATGGTGTTTTCCCCCTACGATTACAAATTGA  850

seq1  ATGTCTGTACTGTAGAAGCTGTCGGGGAGATAGTCTCTCATGTCTATATT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTCTGTACTGTAGAAGCTGTCGGGGAGATAGTCTCTCATGTCTATATT  900

seq1  ATACAGTGTTATCTGTGCCGTGTAAGATAGTTCCTAGCATCAAGTCAGTA  950
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  ATACAGTGTTATCTGTGCCGTGT-AGATAGTTCCTAGCATCAAGTCAGTA  949

seq1  TAAATAGCTCTGACTGGCACCGATGAATGAAGAGGCTTAACCCACCTCCC  1000
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  TAAATAGCTCTGACTGCCACCGATGAATGAAGAGGCTTAACCCACCTCCC  999

seq1  AAGATTCCACACTGACTTCCTTCATGAACAGTGGCTGTAGAGTGGGTTGG  1050
      |||| ||||||||||||| ||||||| ||||||||||||||||||| |||
seq2  AAGA-TCCACACTGACTT-CTTCATG-ACAGTGGCTGTAGAGTGGGGTGG  1046

seq1  AGTACCTGTGAATCTTGGAGGAGGAAGTAGCCTAGGT-TATGTGAGAGCA  1099
      |||||||||||||| ||||||| |||||||||||||| |  |||  | ||
seq2  AGTACCTGTGAATC-TGGAGGA-GAAGTAGCCTAGGTATTGGTGGAACCA  1094

seq1  CCTCACACAGAACATTTAGGAAACTCATGCATATTACCTACTACCACCCA  1149
      |||| ||||||   |||| | ||||||||| ||||| |||||||  ||||
seq2  CCTCCCACAGA--CTTTA-GTAACTCATGC-TATTATCTACTACACCCCA  1140

seq1  AGAAGAATAT-GTTAGACACT-GTCCAAAGTGCCACCACCCACTCCCCGT  1197
       || |||| | |||||||||| ||||| ||| ||| ||||||   |||||
seq2  GGAGGAATTTGGTTAGACACTGGTCCAGAGTTCCA-CACCCA--TCCCGT  1187

seq1  CACAC  1202
      |||||
seq2  CACAC  1192