BAC Information

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BAC

Clone NameB6Ng01-081K01
Chromosome10 (Build37)
Map Location 42,488,110 - 42,709,185
singlet/doubletdoublet
Overlap geneSec63, Scml4, EG666569, C230040G06
Upstream gene2410017P07Rik, Sesn1, Armc2, 1700016J18Rik, LOC624784, Foxo3a, Lace1, LOC666540, Snx3, Nr2e1, c222389, Ostm1
Downstream geneSobp, 9030612E09Rik, Pdss2, LOC100042155, AK122525, LOC100042179, 1700021F05Rik, Cd24a, EG668190, LOC100041418, 1700027J07Rik, EG668192, Qrsl1, Rtn4ip1, Aim1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-081K01.bB6Ng01-081K01.g
ACCDH896424DH896425
length1,069920
definitionDH896424|Mus musculus domesticus DNA, BAC clone: B6Ng01-081K01, 5' end.DH896425|Mus musculus domesticus DNA, BAC clone: B6Ng01-081K01, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(42,708,112 - 42,709,185)(42,488,110 - 42,489,034)
sequence
gaattcagtatgtaagccaggctggcctttaactcacagaacaccacccc
acctagctacttattcaatttatttatttctgacaagatctctctctaca
tagacctcgctgttctggaactcacgatgatgccagtctgagctatatac
aaagcgggacttatctcagtaagctctaaccaacaaaaggcgaaacaaag
aaacagcttcaagaaaatggaaaggaaaaagagacagaaataagaaggaa
aattatgtttgtttttaaaagtctgttattaagaaagtaattttctgaca
caaactctgggtcagcttttgtgggtactccctgccctgtggcttccaga
gccctccctgcgggcctgctgtggtgcgtgcccaggaaccccttgggcgt
tccctgtctgaggacctgacctcttacttctttggaaggacaggatgaga
ttaccagagctttggatccatttttggatcaaatgaaaaccgcaggctag
tcctcagagtagccttctcctcttacagagctggctgggctgtaagggcg
gggctccgccttccctgggaccaaggcttggtcacgtgctgctcacgagg
tgcgcaaggttccaccatcctcgttaccctcgtttccgtttattttgtat
ccattgtaagcagagcttcaggctccttcggagcaaagatctctgtccgt
gatcggagagaactacacaacaggttccagttagaccctttgccactttg
ttttgtgattgttcaaacgggtggaagtacacatctccttgcctcagacc
accaacaatactctgcaccctttaataagaccatgtgctcacgatataga
atgtttgcagtccacactgtaagaaatctagaacattttatttgctgggt
gggaacgtgcttctgacccctggctctaatgatgctttccaatagaccca
ccccgaattcttacaggttaattaattagtcacagccatgcttgggatcc
ccactcagattatattaaaggtaccttgagctgaaattcttgcccgcaag
attttaaaccgcaaggcac
gaattctctgtgaggatcattttagaaatagtcttacttgggctgtcccc
acttgcccctccaaggaagagttatagaactacagcccttttcacctcat
ctgtttattagtcttaaggtgaggtgtgcttaatgctctttgaatagcac
ttgaggaaatgtgctacctatattagaaaactgagacctcagggaggtga
gaggtattcaacttgcctcaagccattagctgtaagattggatgttggac
ccaaattagtcttattccaaagcttctcttttagttgctactttgtactc
ctttctgtaattaagtaaacattgcatgttataataatatcaatacagca
agtggaaagtgctgaaggagaacggaatttctgttttggggcttgggcaa
atgcttcatgcaaaggtgatttaagatggatcttgaaaagaaggacattc
ttaactaggggaaacactgcaaaagcatgggtgctctgtacataagtgat
gaggacttgaaatgtaacgggcactttggatcaagtgagcagtttggagt
tgattctttgtcctattattgacttgaacagtagagcaatgacacctggc
tggtgtgggttttgtgaatctagtggagaatggtttggaagttgggggac
cctaagtataactgagagtccatctcagcttatttcattgagatgttagg
atttagaagtataactagatttaaaaaattctgagatagtttggactgtt
tatttcttatatattatttccccttaactgatttctgttccctttaaagt
atttggtgattgcagttatagtttgggaactgagtgtagtgaaatagatt
gggatgaacattatataaagaaataaagaagtcaggggctggagagagat
ggcttctcgagtaagagcac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_42708112_42709185
seq2: B6Ng01-081K01.b_46_1114 (reverse)

seq1  GTGCCTTGCGGTTTTAAAATCTGGCGGGCAAGAATTTCAGCTCAAGGTAC  50
      ||||||||||| |||||||||| |||||||||||||||||||||||||||
seq2  GTGCCTTGCGG-TTTAAAATCTTGCGGGCAAGAATTTCAGCTCAAGGTAC  49

seq1  CTTTAATATTATTCTGAGTGGGGATCCCCAGCATGGCTGTGACTAATTAA  100
      |||||||| || |||||||||||||||| |||||||||||||||||||||
seq2  CTTTAATA-TAATCTGAGTGGGGATCCCAAGCATGGCTGTGACTAATTAA  98

seq1  TTAACCTTGTAAGAATTCGGGGTGGGTCTATTGGAAAGCATCATTAGAGC  150
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  TTAACC-TGTAAGAATTCGGGGTGGGTCTATTGGAAAGCATCATTAGAGC  147

seq1  CAGGGGTTCAGAAGCACGTTCCCACCCAGCAAATAAAATGTTCTAGATTT  200
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGG-TCAGAAGCACGTTCCCACCCAGCAAATAAAATGTTCTAGATTT  196

seq1  CTTACAGTGTGGACTGCAAACATTCTTATATCGTGAGCACATGGTCTTAT  250
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  CTTACAGTGTGGACTGCAAACATTC-TATATCGTGAGCACATGGTCTTAT  245

seq1  TAAAGGGTGCAGAGTATTGTTGGTGGTCTGAGGCAAGGAGATGTGTACTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGGGTGCAGAGTATTGTTGGTGGTCTGAGGCAAGGAGATGTGTACTT  295

seq1  CCACCCGTTTGAACAATCACAAAACAAAGTGGCAAAGGGTCTAACTGGAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACCCGTTTGAACAATCACAAAACAAAGTGGCAAAGGGTCTAACTGGAA  345

seq1  CCTGTTGTGTAGTTCTCTCCGATCACGGACAGAGATCTTTGCTCCGAAGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTTGTGTAGTTCTCTCCGATCACGGACAGAGATCTTTGCTCCGAAGG  395

seq1  AGCCTGAAGCTCTGCTTACAATGGATACAAAATAAACGGAAACGAGGGTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTGAAGCTCTGCTTACAATGGATACAAAATAAACGGAAACGAGGGTA  445

seq1  ACGAGGATGGTGGAACCTTGCGCACCTCGTGAGCAGCACGTGACCAAGCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGAGGATGGTGGAACCTTGCGCACCTCGTGAGCAGCACGTGACCAAGCC  495

seq1  TTGGTCCCAGGGAAGGCGGAGCCCCGCCCTTACAGCCCAGCCAGCTCTGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTCCCAGGGAAGGCGGAGCCCCGCCCTTACAGCCCAGCCAGCTCTGT  545

seq1  AAGAGGAGAAGGCTACTCTGAGGACTAGCCTGCGGTTTTCATTTGATCCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGGAGAAGGCTACTCTGAGGACTAGCCTGCGGTTTTCATTTGATCCA  595

seq1  AAAATGGATCCAAAGCTCTGGTAATCTCATCCTGTCCTTCCAAAGAAGTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATGGATCCAAAGCTCTGGTAATCTCATCCTGTCCTTCCAAAGAAGTA  645

seq1  AGAGGTCAGGTCCTCAGACAGGGAACGCCCAAGGGGTTCCTGGGCACGCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGTCAGGTCCTCAGACAGGGAACGCCCAAGGGGTTCCTGGGCACGCA  695

seq1  CCACAGCAGGCCCGCAGGGAGGGCTCTGGAAGCCACAGGGCAGGGAGTAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACAGCAGGCCCGCAGGGAGGGCTCTGGAAGCCACAGGGCAGGGAGTAC  745

seq1  CCACAAAAGCTGACCCAGAGTTTGTGTCAGAAAATTACTTTCTTAATAAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACAAAAGCTGACCCAGAGTTTGTGTCAGAAAATTACTTTCTTAATAAC  795

seq1  AGACTTTTAAAAACAAACATAATTTTCCTTCTTATTTCTGTCTCTTTTTC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTTTTAAAAACAAACATAATTTTCCTTCTTATTTCTGTCTCTTTTTC  845

seq1  CTTTCCATTTTCTTGAAGCTGTTTCTTTGTTTCGCCTTTTGTTGGTTAGA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCCATTTTCTTGAAGCTGTTTCTTTGTTTCGCCTTTTGTTGGTTAGA  895

seq1  GCTTACTGAGATAAGTCCCGCTTTGTATATAGCTCAGACTGGCATCATCG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTACTGAGATAAGTCCCGCTTTGTATATAGCTCAGACTGGCATCATCG  945

seq1  TGAGTTCCAGAACAGCGAGGTCTATGTAGAGAGAGATCTTGTCAGAAATA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTTCCAGAACAGCGAGGTCTATGTAGAGAGAGATCTTGTCAGAAATA  995

seq1  AATAAATTGAATAAGTAGCTAGGTGGGGTGGTGTTCTGTGAGTTAAAGGC  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAATTGAATAAGTAGCTAGGTGGGGTGGTGTTCTGTGAGTTAAAGGC  1045

seq1  CAGCCTGGCTTACATACTGAATTC  1074
      ||||||||||||||||||||||||
seq2  CAGCCTGGCTTACATACTGAATTC  1069

seq1: chr10_42488110_42489034
seq2: B6Ng01-081K01.g_68_987

seq1  GAATTCTCTGTGAGGATCATTTTAGAAATAGTCTTACTTGGGCTGTCCCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTGTGAGGATCATTTTAGAAATAGTCTTACTTGGGCTGTCCCC  50

seq1  ACTTGCCCCTCCAAGGAAGAGTTATAGAACTACAGCCCTTTTCACCTCAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGCCCCTCCAAGGAAGAGTTATAGAACTACAGCCCTTTTCACCTCAT  100

seq1  CTGTTTATTAGTCTTAAGGTGAGGTGTGCTTAATGCTCTTTGAATAGCAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTTATTAGTCTTAAGGTGAGGTGTGCTTAATGCTCTTTGAATAGCAC  150

seq1  TTGAGGAAATGTGCTACCTATATTAGAAAACTGAGACCTCAGGGAGGTGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGGAAATGTGCTACCTATATTAGAAAACTGAGACCTCAGGGAGGTGA  200

seq1  GAGGTATTCAACTTGCCTCAAGCCATTAGCTGTAAGATTGGATGTTGGAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGTATTCAACTTGCCTCAAGCCATTAGCTGTAAGATTGGATGTTGGAC  250

seq1  CCAAATTAGTCTTATTCCAAAGCTTCTCTTTTAGTTGCTACTTTGTACTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAATTAGTCTTATTCCAAAGCTTCTCTTTTAGTTGCTACTTTGTACTC  300

seq1  CTTTCTGTAATTAAGTAAACATTGCATGTTATAATAATATCAATACAGCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCTGTAATTAAGTAAACATTGCATGTTATAATAATATCAATACAGCA  350

seq1  AGTGGAAAGTGCTGAAGGAGAACGGAATTTCTGTTTTGGGGCTTGGGCAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGAAAGTGCTGAAGGAGAACGGAATTTCTGTTTTGGGGCTTGGGCAA  400

seq1  ATGCTTCATGCAAAGGTGATTTAAGATGGATCTTGAAAAGAAGGACATTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTTCATGCAAAGGTGATTTAAGATGGATCTTGAAAAGAAGGACATTC  450

seq1  TTAACTAGGGGAAACACTGCAAAAGCATGGGTGCTCTGTACATAAGTGAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAACTAGGGGAAACACTGCAAAAGCATGGGTGCTCTGTACATAAGTGAT  500

seq1  GAGGACTTGAAATGTAACGGGCACTTTGGATCAAGTGAGCAGTTTGGAGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGACTTGAAATGTAACGGGCACTTTGGATCAAGTGAGCAGTTTGGAGT  550

seq1  TGATTCTTTGTCCTATTATTGACTTGAACAGTAGAGCAATGACACCTGGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTCTTTGTCCTATTATTGACTTGAACAGTAGAGCAATGACACCTGGC  600

seq1  TGGTGTGGGTTTTGTGAATCTAGTGGAGAATGGTTTGGAAGTTGGGGGAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGTGGGTTTTGTGAATCTAGTGGAGAATGGTTTGGAAGTTGGGGGAC  650

seq1  CCTAAGTATAACTGAGAGTCCATCTCAGCTTATTTCATTGAGATGTTAGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAAGTATAACTGAGAGTCCATCTCAGCTTATTTCATTGAGATGTTAGG  700

seq1  ATTTAGAAGTATAACTAGATTTAAAAAATTCTGAGATAGTTTGGACTGTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTAGAAGTATAACTAGATTTAAAAAATTCTGAGATAGTTTGGACTGTT  750

seq1  TATTTCTTATATATTTATTTCCCCTTAACTGATTTCTGTTCCCTTTAAAG  800
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  TATTTCTTATATA-TTATTTCCCCTTAACTGATTTCTGTTCCCTTTAAAG  799

seq1  TTATTTGGTGATTGCAGTTATAGTTTGGGAACTGAGTGTAGTGAAAAAGA  850
       ||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  -TATTTGGTGATTGCAGTTATAGTTTGGGAACTGAGTGTAGTGAAATAGA  848

seq1  TTGGGATGAACATTAAAAAAAAGAAAAGAAAAGAAGTCAGGGGCTGGAGA  900
      |||||||||||||| | | |||||||   |||||||||||||||||||||
seq2  TTGGGATGAACATT-ATATAAAGAAA--TAAAGAAGTCAGGGGCTGGAGA  895

seq1  GAGATGGCTCAGCGAGTAAGAGCAC  925
      |||||||||   |||||||||||||
seq2  GAGATGGCTTCTCGAGTAAGAGCAC  920