BAC Information

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BAC

Clone NameB6Ng01-082H05
Chromosome10 (Build37)
Map Location 48,192,044 - 48,292,282
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100041663, LOC100042398
Downstream geneLOC546562, LOC100041689, Grik2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-082H05.bB6Ng01-082H05.g
ACCDH897001DH897002
length1,1461,121
definitionDH897001|Mus musculus domesticus DNA, BAC clone: B6Ng01-082H05, 5' end.DH897002|Mus musculus domesticus DNA, BAC clone: B6Ng01-082H05, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(48,291,122 - 48,292,282)(48,192,044 - 48,193,183)
sequence
gaattcttgtgcctttatctctgtggatagtgtcttatatacattttggg
ataggttggggtctaaaacaggtgcttcttattgccttgatctaagatgt
tagggatacctcctctgcaagttgagtggctttggagcactgcctctaca
tgatgtattgtcatgatcctctcaatagggtgtcatagtcatgtgacaac
tacctggttagagacaggtaaaaaatctactgtccccaggtctgaggata
ctggggtttttgaacccattcaacattaccaagtttcttggcacagttca
ctgcccagtgtatatggagagagttgatagccttgtctttttcctgattt
tagtggaattactttgagtttctctttatgtaatttgatgtcagctatgg
gcttactgtaattgtctgtaatttgatgaggtatgtcctttctatcctga
tccctcgtagacctaccaagaaggagtggttgatattgtcaactagtatc
tatttttttagaaagttaaaaacgaagatttaaataattttccttttaat
tttatatagtatagttattataattgtacatttctctaaaaatttaatga
agtaacttgtatactgttcccaaatcaaactaaaagaagaatatgattat
agcaacacatttttataatacaaattctgtgacgataataatgtgatttt
aatatgttgtctgaatttagaaatatttgttatatgctcatttttataca
ttgtaaataattatttgttttgtagctagtatccacatttgagttccaat
ttttaattcttctagttattaatctacacattttacattttatttttctt
tacaatgaagtaatttcattcacgtttattttacattttcattacctatt
aataattagttgaatacttccatttcatagatactttaagcaaagtagtt
ataaatatgactctgcagaataggtatagagtttttttctgtatatgctc
atgagtggtatggtgggtcaaaaatatatttgggtatatctagttaaagc
caggtgtcactgtgctgctagcatcttcaggcctaagaatgtacatccca
acatactactcaacagagactcaaagtaaccaatgtaaacttattt
gaattctctcaaacccagattcgttcaactgaagatttcttagcctaaac
aagagtacatccagaaaactgaaactcttccaagtgttgctgtcactctg
gtacttcacagaagaaaatataaattcctttgaacaagaaatgtcaaaat
ataaacaaaactaagagataacattagactcttctataaaatataggatt
atttgaaagttatagattttatgcatatcctaggattaacacaacagtga
aaaattatagcttatatgcaattagatatatgtaaaatatctttattaaa
atatgcaactttatgtatagaaaataaaattacaaaatattataattacc
tatgtgtatatatataaatttctgcacatattaaggaaagaaatttgtaa
actatatagtactatttcattttaagaagttgacaaatttcatatttttg
ttttgtttgtattaataactttaaataatacacccacacatgctagaatt
ctaagtatagaatgtgatcgtgtaaagctgagaattatgagaaatctgta
caggaattgtatttatgttatggactgagagtacattattcaaattgcat
ttcctttcttcataaaagagttacagaaatttgtgaatgcagaagaaatt
tgtaacagttagtccaagatgagcaacaaaagtcagaaagagaatttgtc
aaaacaactatcaagaaaacaacagtaaaaacaaaaagtagaaacaaaac
aaaacaaacaagcacacaaatatcagaaaacccatggagaaaatgtggcc
aagagcaaactgatttcatgagagcagaggccaaatattcaaatgtaaag
cattttaaacactgggatgacagagcagctcataaaccatctgctattgc
tgatccatctgttgtcacacagtcattcaacactcttcggtcttagaaaa
atcatgatttacatttttcttatgggaaataatagtggtgatttaagagc
agtatttgattatgctaagccataatatccatttaaccttatatagtcca
ctacctatattaaaacaatgtgtcattacctcatgtctttcataaattgg
gttagcagaaatttaatatat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_48291122_48292282
seq2: B6Ng01-082H05.b_32_1177 (reverse)

seq1  AAATAATGTTTTACATTGTGTTACTTTGGATGTCTCTGTTTGAGTATGTA  50
      ||||||   ||||||||| |||||||||   ||||||| ||||||| |||
seq2  AAATAA--GTTTACATTG-GTTACTTTG--AGTCTCTG-TTGAGTA-GTA  43

seq1  TGTTTGTGGATGTACATGTCTTTATGCCTGAAGATGCTAGCAAGCACAGT  100
      ||||   |||||||||| || ||| |||||||||||||||| ||||||||
seq2  TGTT--GGGATGTACAT-TC-TTAGGCCTGAAGATGCTAGC-AGCACAGT  88

seq1  GACTACTTGGCTTTAACTAGATATACCCAAATATATTTTTGACCCACCAT  150
      ||| || |||||||||||||||||||||||||||||||||||||||||| 
seq2  GAC-ACCTGGCTTTAACTAGATATACCCAAATATATTTTTGACCCACCA-  136

seq1  TACCACTCATGAGCATATACAGAAAAAAACTCTATACCTTATCCTGCAGA  200
      |||||||||||||||||||||||||||||||||||||| ||| |||||||
seq2  TACCACTCATGAGCATATACAGAAAAAAACTCTATACC-TATTCTGCAGA  185

seq1  GTCATATTTATAACTACTTTGCTTAAAGTATCTATGAAATGGAAGTATTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCATATTTATAACTACTTTGCTTAAAGTATCTATGAAATGGAAGTATTC  235

seq1  AACTAATTATTAATAGGTAATGAAAATGTAAAATAAACGTGAATGAAATT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTAATTATTAATAGGTAATGAAAATGTAAAATAAACGTGAATGAAATT  285

seq1  ACTTCATTGTAAAGAAAAATAAAATGTAAAATGTGTAGATTAATAACTAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCATTGTAAAGAAAAATAAAATGTAAAATGTGTAGATTAATAACTAG  335

seq1  AAGAATTAAAAATTGGAACTCAAATGTGGATACTAGCTACAAAACAAATA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAATTAAAAATTGGAACTCAAATGTGGATACTAGCTACAAAACAAATA  385

seq1  ATTATTTACAATGTATAAAAATGAGCATATAACAAATATTTCTAAATTCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATTTACAATGTATAAAAATGAGCATATAACAAATATTTCTAAATTCA  435

seq1  GACAACATATTAAAATCACATTATTATCGTCACAGAATTTGTATTATAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAACATATTAAAATCACATTATTATCGTCACAGAATTTGTATTATAAA  485

seq1  AATGTGTTGCTATAATCATATTCTTCTTTTAGTTTGATTTGGGAACAGTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTGTTGCTATAATCATATTCTTCTTTTAGTTTGATTTGGGAACAGTA  535

seq1  TACAAGTTACTTCATTAAATTTTTAGAGAAATGTACAATTATAATAACTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAAGTTACTTCATTAAATTTTTAGAGAAATGTACAATTATAATAACTA  585

seq1  TACTATATAAAATTAAAAGGAAAATTATTTAAATCTTCGTTTTTAACTTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTATATAAAATTAAAAGGAAAATTATTTAAATCTTCGTTTTTAACTTT  635

seq1  CTAAAAAAATAGATACTAGTTGACAATATCAACCACTCCTTCTTGGTAGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAAAAAATAGATACTAGTTGACAATATCAACCACTCCTTCTTGGTAGG  685

seq1  TCTACGAGGGATCAGGATAGAAAGGACATACCTCATCAAATTACAGACAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTACGAGGGATCAGGATAGAAAGGACATACCTCATCAAATTACAGACAA  735

seq1  TTACAGTAAGCCCATAGCTGACATCAAATTACATAAAGAGAAACTCAAAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACAGTAAGCCCATAGCTGACATCAAATTACATAAAGAGAAACTCAAAG  785

seq1  TAATTCCACTAAAATCAGGAAAAAGACAAGGCTATCAACTCTCTCCATAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTCCACTAAAATCAGGAAAAAGACAAGGCTATCAACTCTCTCCATAT  835

seq1  ACACTGGGCAGTGAACTGTGCCAAGAAACTTGGTAATGTTGAATGGGTTC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTGGGCAGTGAACTGTGCCAAGAAACTTGGTAATGTTGAATGGGTTC  885

seq1  AAAAACCCCAGTATCCTCAGACCTGGGGACAGTAGATTTTTTACCTGTCT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAACCCCAGTATCCTCAGACCTGGGGACAGTAGATTTTTTACCTGTCT  935

seq1  CTAACCAGGTAGTTGTCACATGACTATGACACCCTATTGAGAGGATCATG  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAACCAGGTAGTTGTCACATGACTATGACACCCTATTGAGAGGATCATG  985

seq1  ACAATACATCATGTAGAGGCAGTGCTCCAAAGCCACTCAACTTGCAGAGG  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATACATCATGTAGAGGCAGTGCTCCAAAGCCACTCAACTTGCAGAGG  1035

seq1  AGGTATCCCTAACATCTTAGATCAAGGCAATAAGAAGCACCTGTTTTAGA  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTATCCCTAACATCTTAGATCAAGGCAATAAGAAGCACCTGTTTTAGA  1085

seq1  CCCCAACCTATCCCAAAATGTATATAAGACACTATCCACAGAGATAAAGG  1150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCAACCTATCCCAAAATGTATATAAGACACTATCCACAGAGATAAAGG  1135

seq1  CACAAGAATTC  1161
      |||||||||||
seq2  CACAAGAATTC  1146

seq1: chr10_48192044_48193183
seq2: B6Ng01-082H05.g_70_1190

seq1  GAATTCTCTCAAACCCAGATTCGTTCAACTGAAGATTTCTTAGCCTAAAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTCAAACCCAGATTCGTTCAACTGAAGATTTCTTAGCCTAAAC  50

seq1  AAGAGTACATCCAGAAAACTGAAACTCTTCCAAGTGTTGCTGTCACTCTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGTACATCCAGAAAACTGAAACTCTTCCAAGTGTTGCTGTCACTCTG  100

seq1  GTACTTCACAGAAGAAAATATAAATTCCTTTGAACAAGAAATGTCAAAAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACTTCACAGAAGAAAATATAAATTCCTTTGAACAAGAAATGTCAAAAT  150

seq1  ATAAACAAAACTAAGAGATAACATTAGACTCTTCTATAAAATATAGGATT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAACAAAACTAAGAGATAACATTAGACTCTTCTATAAAATATAGGATT  200

seq1  ATTTGAAAGTTATAGATTTTATGCATATCCTAGGATTAACACAACAGTGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGAAAGTTATAGATTTTATGCATATCCTAGGATTAACACAACAGTGA  250

seq1  AAAATTATAGCTTATATGCAATTAGATATATGTAAAATATCTTTATTAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATTATAGCTTATATGCAATTAGATATATGTAAAATATCTTTATTAAA  300

seq1  ATATGCAACTTTATGTATAGAAAATAAAATTACAAAATATTATAATTACC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGCAACTTTATGTATAGAAAATAAAATTACAAAATATTATAATTACC  350

seq1  TATGTGTATATATATAAATTTCTGCACATATTAAGGAAAGAAATTTGTAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTGTATATATATAAATTTCTGCACATATTAAGGAAAGAAATTTGTAA  400

seq1  ACTATATAGTACTATTTCATTTTAAGAAGTTGACAAATTTCATATTTTTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTATATAGTACTATTTCATTTTAAGAAGTTGACAAATTTCATATTTTTG  450

seq1  TTTTGTTTGTATTAATAACTTTAAATAATACACCCACACATGCTAGAATT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGTTTGTATTAATAACTTTAAATAATACACCCACACATGCTAGAATT  500

seq1  CTAAGTATAGAATGTGATCGTGTAAAGCTGAGAATTATGAGAAATCTGTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAGTATAGAATGTGATCGTGTAAAGCTGAGAATTATGAGAAATCTGTA  550

seq1  CAGGAATTGTATTTATGTTATGGACTGAGAGTACATTATTCAAATTGCAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGAATTGTATTTATGTTATGGACTGAGAGTACATTATTCAAATTGCAT  600

seq1  TTCCTTTCTTCATAAAAGAGTTACAGAAATTTGTGAATGCAGAAGAAATT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTTTCTTCATAAAAGAGTTACAGAAATTTGTGAATGCAGAAGAAATT  650

seq1  TGTAACAGTTAGTCCAAGATGAGCAACAAAAGTCAGAAAGAGAATTTGTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAACAGTTAGTCCAAGATGAGCAACAAAAGTCAGAAAGAGAATTTGTC  700

seq1  AAAACAACTATCAAGAAAACAACAGTAAAAACAAAAAGTAGAAACAAAAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACAACTATCAAGAAAACAACAGTAAAAACAAAAAGTAGAAACAAAAC  750

seq1  AAAACAAACAAGCACACAAATATCAGAAAACCCATGGAGAAAATGTGGCC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACAAACAAGCACACAAATATCAGAAAACCCATGGAGAAAATGTGGCC  800

seq1  AAGAGCAAACTGATTTCATGAGAGCAGAGGCCAAATATTCAAATGTAAAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGCAAACTGATTTCATGAGAGCAGAGGCCAAATATTCAAATGTAAAG  850

seq1  CATTTTAAACACTGGGATGACAGAGCAGCTCATAAACCATCTGCTATTGC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTTAAACACTGGGATGACAGAGCAGCTCATAAACCATCTGCTATTGC  900

seq1  TGATCCATCTGTTGTCAACACAGTCATTCAACACTCTTCGGTCTTAGAAA  950
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  TGATCCATCTGTTGTC-ACACAGTCATTCAACACTCTTCGGTCTTAGAAA  949

seq1  CATCATGATTTACATTTTTCTTAATTGGAAAATAATAGTGGTGATTTAAA  1000
       ||||||||||||||||||||||  ||| |||||||||||||||||| ||
seq2  AATCATGATTTACATTTTTCTTA--TGGGAAATAATAGTGGTGATTT-AA  996

seq1  GAGGCAGTATTTGATTATGCTAAGCCATTAAATATCCATTTTAACCTTAT  1050
      || |||||||||||||||||||||||||  |||||||| |||||||||||
seq2  GA-GCAGTATTTGATTATGCTAAGCCAT--AATATCCA-TTTAACCTTAT  1042

seq1  TATTAGTTCCACTACTCATAATTAAAACAATGTGTCATTACATCAATGTC  1100
         ||| ||||||||  || ||||||||||||||||||||| || |||||
seq2  --ATAG-TCCACTACCTAT-ATTAAAACAATGTGTCATTACCTC-ATGTC  1087

seq1  TATACATAAAAATGTGTTTAAGCAGAAATATTAAATATAT  1140
      | | ||| ||| || |||  |||||||  ||| |||||||
seq2  T-TTCAT-AAATTGGGTT--AGCAGAA--ATTTAATATAT  1121