BAC Information

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BAC

Clone NameB6Ng01-083P03
Chromosome10 (Build37)
Map Location 42,118,267 - 42,288,662
singlet/doubletdoublet
Overlap geneLace1, Snx3, Nr2e1
Upstream geneLOC633979, Zbtb24, Mical1, Smpd2, Ppil6, Cd164, 5033413D22Rik, EG629461, 2410017P07Rik, Sesn1, Armc2, 1700016J18Rik, LOC624784, Foxo3a, LOC666540
Downstream genec222389, Ostm1, Sec63, Scml4, EG666569, C230040G06, Sobp, 9030612E09Rik, Pdss2, LOC100042155, AK122525, LOC100042179, 1700021F05Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-083P03.bB6Ng01-083P03.g
ACCDH898057DH898058
length2711,132
definitionDH898057|Mus musculus domesticus DNA, BAC clone: B6Ng01-083P03, 5' end.DH898058|Mus musculus domesticus DNA, BAC clone: B6Ng01-083P03, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(42,288,392 - 42,288,662)(42,118,267 - 42,119,414)
sequence
gaattctccctctccaggaggatgggaaccctgacctaggagctcagcca
gtcttcagggtttcacaccagagcagcctacctgctcagcagctgctagt
ttctgggtggccagcaggttgaagcaaggacatgaggggttaactctttc
ctgaggggattgaagtttgatgagctggaggggctgactctgaaatgcct
gtgtgtgtctataagcaccacttcaaaaagcaaaatgtgggagatagggg
ggaaatagattatttgggggg
gaattcactttcatggagggaagccaaggtcctcaagacatgagcctgga
taaggttggctgcttattggcttgctttccagcctggcttttttatacag
cccaggctccacctgcctaggaatggtggcactcacagaaggccacgcct
cttgtatcaattagctattaagatggagccccacaggcacgtcccccaga
ccttccctcatgccagccactcttgtggctaaacagcacaaagacggaca
agctccacctgggccagctctagtttcttgtcattgacctgtgctctgtt
atatatgagagaactttgcaatgaactggacattttagatattttctaat
gcaatctttacattgattcttggacatctcagctcatggtcaatttgaaa
ttatgaattattcattttgggtgctcttctgtcttcagaaaaatcaagag
cagaaaaagaaaaggaaaggaaatttgatgggtcgatttagttgtctgtc
attggtatcgtatattgaattatgataaattactggccacagaggaataa
aaggcttaagttccctccagaaaagtatatagacaaagttctgtgagcct
tctttttctatagctcgtgtattagcgccatatgaagatactattttggg
cacgatttttcttcatttcttgtttgtattgtggtctctttatagagttt
attactttggagtggagcagaaacattgcaaatcacctctccccatgtgt
gaagcatgaatatcaaagggagacattactgacaggatggaccctctgaa
agcactttcctcacttctataaatatctcggagaaattaagttccccggg
aacctaaaattggtcagggaaacagatgtttgaattcttctgagttagta
caggcaccaacaataatccagcgctatggtaaagaacttgtctgactgtg
tgcttagagtatctaaagctatttcactctcttcttagcacgaaaatttg
aagtttagttttgctaataaaactttattctttttgaatatgtgaatgca
tcaagacattgcatatctaattagataattacatttggcacatattgaag
cgtcaattggaactttacttgcctttctgcgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_42288392_42288662
seq2: B6Ng01-083P03.b_41_311 (reverse)

seq1  CCCCCCAAATAATCTATTTCCCCCCTATCTCCCACATTTTGCTTTTTGAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCCCAAATAATCTATTTCCCCCCTATCTCCCACATTTTGCTTTTTGAA  50

seq1  GTGGTGCTTATAGACACACACAGGCATTTCAGAGTCAGCCCCTCCAGCTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGTGCTTATAGACACACACAGGCATTTCAGAGTCAGCCCCTCCAGCTC  100

seq1  ATCAAACTTCAATCCCCTCAGGAAAGAGTTAACCCCTCATGTCCTTGCTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAAACTTCAATCCCCTCAGGAAAGAGTTAACCCCTCATGTCCTTGCTT  150

seq1  CAACCTGCTGGCCACCCAGAAACTAGCAGCTGCTGAGCAGGTAGGCTGCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACCTGCTGGCCACCCAGAAACTAGCAGCTGCTGAGCAGGTAGGCTGCT  200

seq1  CTGGTGTGAAACCCTGAAGACTGGCTGAGCTCCTAGGTCAGGGTTCCCAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTGTGAAACCCTGAAGACTGGCTGAGCTCCTAGGTCAGGGTTCCCAT  250

seq1  CCTCCTGGAGAGGGAGAATTC  271
      |||||||||||||||||||||
seq2  CCTCCTGGAGAGGGAGAATTC  271

seq1: chr10_42118267_42119414
seq2: B6Ng01-083P03.g_71_1202

seq1  GAATTCACTTTCATGGAGGGAAGCCAAGGTCCTCAAGACATGAGCCTGGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTTTCATGGAGGGAAGCCAAGGTCCTCAAGACATGAGCCTGGA  50

seq1  TAAGGTTGGCTGCTTATTGGCTTGCTTTCCAGCCTGGCTTTTTTATACAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGGTTGGCTGCTTATTGGCTTGCTTTCCAGCCTGGCTTTTTTATACAG  100

seq1  CCCAGGCTCCACCTGCCTAGGAATGGTGGCACTCACAGAAGGCCACGCCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGGCTCCACCTGCCTAGGAATGGTGGCACTCACAGAAGGCCACGCCT  150

seq1  CTTGTATCAATTAGCTATTAAGATGGAGCCCCACAGGCACGTCCCCCAGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTATCAATTAGCTATTAAGATGGAGCCCCACAGGCACGTCCCCCAGA  200

seq1  CCTTCCCTCATGCCAGCCACTCTTGTGGCTAAACAGCACAAAGACGGACA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCCCTCATGCCAGCCACTCTTGTGGCTAAACAGCACAAAGACGGACA  250

seq1  AGCTCCACCTGGGCCAGCTCTAGTTTCTTGTCATTGACCTGTGCTCTGTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCCACCTGGGCCAGCTCTAGTTTCTTGTCATTGACCTGTGCTCTGTT  300

seq1  ATATATGAGAGAACTTTGCAATGAACTGGACATTTTAGATATTTTCTAAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATGAGAGAACTTTGCAATGAACTGGACATTTTAGATATTTTCTAAT  350

seq1  GCAATCTTTACATTGATTCTTGGACATCTCAGCTCATGGTCAATTTGAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAATCTTTACATTGATTCTTGGACATCTCAGCTCATGGTCAATTTGAAA  400

seq1  TTATGAATTATTCATTTTGGGTGCTCTTCTGTCTTCAGAAAAATCAAGAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGAATTATTCATTTTGGGTGCTCTTCTGTCTTCAGAAAAATCAAGAG  450

seq1  CAGAAAAAGAAAAGGAAAGGAAATTTGATGGGTCGATTTAGTTGTCTGTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAAAAGAAAAGGAAAGGAAATTTGATGGGTCGATTTAGTTGTCTGTC  500

seq1  ATTGGTATCGTATATTGAATTATGATAAATTACTGGCCACAGAGGAATAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGGTATCGTATATTGAATTATGATAAATTACTGGCCACAGAGGAATAA  550

seq1  AAGGCTTAAGTTCCCTCCAGAAAAGTATATAGACAAAGTTCTGTGAGCCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCTTAAGTTCCCTCCAGAAAAGTATATAGACAAAGTTCTGTGAGCCT  600

seq1  TCTTTTTCTATAGCTCGTGTATTAGCGCCATATGAAGATACTATTTTGGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTTTCTATAGCTCGTGTATTAGCGCCATATGAAGATACTATTTTGGG  650

seq1  CACGATTTTTCTTCATTTCTTGTTTGTATTGTGGTCTCTTTATAGAGTTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACGATTTTTCTTCATTTCTTGTTTGTATTGTGGTCTCTTTATAGAGTTT  700

seq1  ATTACTTTGGAGTGGAGCAGAAACATTGCAAATCACCTCTCCCCATGTGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTACTTTGGAGTGGAGCAGAAACATTGCAAATCACCTCTCCCCATGTGT  750

seq1  GAAGCATGAATATCAAAGGGAGACATTACTGACAGGATGGACCCTCTGAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCATGAATATCAAAGGGAGACATTACTGACAGGATGGACCCTCTGAA  800

seq1  AGCACTTTCCTCACTTCTATAAATATCTCGGAGAAATTAAGTTCCCCGGG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACTTTCCTCACTTCTATAAATATCTCGGAGAAATTAAGTTCCCCGGG  850

seq1  AACCTAAAATTGGTCAGGGAAACAGATGTTTGAATTCTTCTGAGTTAGTA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCTAAAATTGGTCAGGGAAACAGATGTTTGAATTCTTCTGAGTTAGTA  900

seq1  CAGGCACCAACAATAATCCAGCGCTATGGTAAAGAACTTGTCTGACTGTG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCACCAACAATAATCCAGCGCTATGGTAAAGAACTTGTCTGACTGTG  950

seq1  TGCTTAGAGTATCTAAAGCTATTTCAACTCTTCCTTCTTAGCACGAAAAT  1000
      ||||||||||||||||||||||||| |||||  |||||||||||||||||
seq2  TGCTTAGAGTATCTAAAGCTATTTC-ACTCT--CTTCTTAGCACGAAAAT  997

seq1  TTGAAGTTTAGTTTTTGCTAAATAAAACTTTATTCTTTTTTGAATATGTT  1050
      ||||||||||| ||||||| ||||||||||||||| |||||||||||| |
seq2  TTGAAGTTTAG-TTTTGCT-AATAAAACTTTATTC-TTTTTGAATATG-T  1043

seq1  GATATGCATCAAGACCATTTGCATATCTAAAATTAGATAAATTACATTTG  1100
      || ||||||||||||   ||||||||||  |||||||| |||||||||||
seq2  GA-ATGCATCAAGAC--ATTGCATATCT--AATTAGAT-AATTACATTTG  1087

seq1  GCACATAATTGAGCGTCATTTGGGAACTCTATACTTTGCTTTCTGCGT  1148
      ||||||| |  ||||||| |||| |   || |||||  ||||||||||
seq2  GCACATATTGAAGCGTCAATTGGAA---CTTTACTTGCCTTTCTGCGT  1132