BAC Information

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BAC

Clone NameB6Ng01-087L05
Chromosome12 (Build37)10 (Build37)
Map Location 85,867,092 - 85,867,40883,170,868 - 83,171,236
singlet/doubletsingletsinglet
Overlap geneLin52
Upstream geneWdr21, Zfyve1, LOC626950, Rbm25, Psen1, Papln, Numb, LOC100042325, 2410016O06Rik, Acot2, Acot1, Acot4, Acot3, Acot5, LOC666963, Acot6, Dnalc1, Pnma1, C130039O16Rik, EG432676, Zadh1, Zfp410, 9830169C18Rik, Coq6, Entpd5, 2900006K08Rik, Rnf113a2, Aldh6a1
Downstream geneChx10, Abcd4, 7420416P09Rik, Tmem90a, Npc2, Isca2, Ltbp2, 1110018G07Rik, Fcf1, Ylpm1, Prox2, Dlst, Rps6kl1, LOC100042021, Pgf, Eif2b2, Mlh3, Acyp1, 2810002I04Rik, Nek9, Tmed10, LOC100042549, LOC667119, Fos
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-087L05.bB6Ng01-087L05.g
ACCDH900752DH900753
length317583
definitionDH900752|Mus musculus domesticus DNA, BAC clone: B6Ng01-087L05, 5' end.DH900753|Mus musculus domesticus DNA, BAC clone: B6Ng01-087L05, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(85,867,092 - 85,867,408)(83,170,868 - 83,171,236)
sequence
atcagcagtgttaatgttcccacgacaagtgaacaggagggcacttgctc
tggagcaggccctgacccatagcaatttccctgtgcacaaaaaggggttg
gtgcttaggatctgatttataggacaaggtcctcttctagggagcggcta
tgtcatgcattcgtatatctcctatatgggactggcaagaaggggaactt
tctcccctcccatgcagaagatgatgtcttttgaattacttctactttta
tgatggttttctgcagctctgtacttggattaggtggaaggggagagatg
attgagtggaaagggag
gaattcccagtatctctgtagtctaggcggaccttgaactttgtggtctt
cttgcctcagcctcccaaatagctgagatagcaggcctgtgtcaccaggg
agcttcaagtggcctcggtttacctatatacagtaaacttcacccctcct
aatgagccaggagtgtttgtgcacacccagtaagcagggggttggggcgt
gaagatttcaaggccagtttcagctacatagtgagtctttagttgtttgg
ttgttctgtagtaggttctgctgttgctttgttttgttttgttttgagac
aagatctcactatgtagccctggctggcctcaaatctaagtgctgagttt
acaggtgtaagtaagcctccatgcctggattacatagtgagtttgaaatc
agcctgggcaacgtagtaagacacggtcttaaaataaatgaatgaagccc
agcagcagtgatatacatctttaatcctggtactcaggaggcagagcagg
cagatctcttgtgaattcaaggctagcctggtctacagagcgagttccaa
gacagccaaggctacacagagaaaccctgtctc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_85867092_85867408
seq2: B6Ng01-087L05.b_55_371

seq1  ATCAGCAGTGTTAATGTTCCCACGACAAGTGAACAGGAGGGCACTTGCTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGCAGTGTTAATGTTCCCACGACAAGTGAACAGGAGGGCACTTGCTC  50

seq1  TGGAGCAGGCCCTGACCCATAGCAATTTCCCTGTGCACAAAAAGGGGTTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGCAGGCCCTGACCCATAGCAATTTCCCTGTGCACAAAAAGGGGTTG  100

seq1  GTGCTTAGGATCTGATTTATAGGACAAGGTCCTCTTCTAGGGAGCGGCTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCTTAGGATCTGATTTATAGGACAAGGTCCTCTTCTAGGGAGCGGCTA  150

seq1  TGTCATGCATTCGTATATCTCCTATATGGGACTGGCAAGAAGGGGAACTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCATGCATTCGTATATCTCCTATATGGGACTGGCAAGAAGGGGAACTT  200

seq1  TCTCCCCTCCCATGCAGAAGATGATGTCTTTTGAATTACTTCTACTTTTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCCCTCCCATGCAGAAGATGATGTCTTTTGAATTACTTCTACTTTTA  250

seq1  TGATGGTTTTCTGCAGCTCTGTACTTGGATTAGGTGGAAGGGGAGAGATG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGGTTTTCTGCAGCTCTGTACTTGGATTAGGTGGAAGGGGAGAGATG  300

seq1  ATTGAGTGGAAAGGGAG  317
      |||||||||||||||||
seq2  ATTGAGTGGAAAGGGAG  317

seq1: chr10_83170868_83171236
seq2: B6Ng01-087L05.g_543_651 (reverse)

seq1  GAGACAGGGTTTCTCTGTATAGCCCTGGCTGTCCTGGAACTCACTCTGTA  50
      |||||||||||||||||| ||||| |||||||| |||||||| |||||||
seq2  GAGACAGGGTTTCTCTGTGTAGCCTTGGCTGTCTTGGAACTCGCTCTGTA  50

seq1  GACCAGGCTGGCCTCGAACTC---AGAAATCCTCCTGCCTCTGCCTCCCG  97
      ||||||||| |||| ||| ||   ||| |||  |||| |||||||||| |
seq2  GACCAGGCTAGCCTTGAATTCACAAGAGATCTGCCTG-CTCTGCCTCCTG  99

seq1  AGTGTTTTTTTAAAAGGATTTATTTATTTTATGTAAGTACACTAGCTGTC  147
      ||        ||  ||||                                
seq2  AG--------TACCAGGA--------------------------------  109

seq1  TTCAGACACTCCAGAAGAGGGCATCAGATCTCATTATAGATGGTTGTGAG  197
                                                        
seq2  --------------------------------------------------  109

seq1  CCACCATGTGGTTGCTGGGGATTTAAACTCAGGACCTTTGGAAGAACAAT  247
                                                        
seq2  --------------------------------------------------  109

seq1  CAGTGCTCTTAATCGATGAGCCAACTCTCCAGTTTATGTTTATCATCATC  297
                                                        
seq2  --------------------------------------------------  109

seq1  ATCATCATTATTATTTTGTAATCACAGCCATGTTTTAACAGCTCAGCAGC  347
                                                        
seq2  --------------------------------------------------  109

seq1  CAGAGATGCCCAAGTACCAGGA  369
                            
seq2  ----------------------  109