BAC Information

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BAC

Clone NameB6Ng01-088F04
Chromosome10 (Build37)
Map Location 81,548,324 - 81,549,454
singlet/doubletsinglet
Overlap gene4933439G19Rik
Upstream geneCreb3l3, Map2k2, Zbtb7a, Pias4, Eef2, Dapk3, Itgb1bp3, Atcay, 9130206N08Rik, Matk, Mrpl54, Apba3, Tjp3, Pip5k1c, 2510012J08Rik, Tbxa2r, Gipc3, Hmg20b, F630110N24Rik, 4930404N11Rik, Fzr1, Dohh, 2210404O07Rik, Nfic, Brunol5, Ncln, Edg6, Gna15, Gna11, Aes, Tle2, Tle6, BC025920, Sirt6, Ankrd24, LOC100040916, EG666448, EG666458, LOC666711, LOC382388, LOC100040944, EG210583, EG666738, EG666501, 1700123A16Rik, LOC666753, EG666537, BC062127, EG666542, EG666548, EG666790, LOC666571, AL117821, BC062115
Downstream geneBC024063, AU041133, LOC100042712, B230315N10Rik, LOC100042718, EG237412, LOC666611, Gm1553, LOC544716, 1190007I07Rik, Tdg, Glt8d2, Hcfc2, Nfyb, 1700028I16Rik, Txnrd1, Eid3, EG216185, Chst11
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-088F04.bB6Ng01-088F04.g
ACCDH901206DH901207
length1,0461,127
definitionDH901206|Mus musculus domesticus DNA, BAC clone: B6Ng01-088F04, 5' end.DH901207|Mus musculus domesticus DNA, BAC clone: B6Ng01-088F04, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctattcatgtggctatcttcttttgggtttgttgaaagattactt
tcttgctttttctagtgtatagtttcccttcttgtattggagttttccat
ctgttatcctttgtagggctggatttatggagagatattgtgtaaatttg
gttttgtcatggaatatctttggttctccatctatagtaattaagagttt
ggctgagtatagtagcctgggctggcatttgtgttctcttaggatctgta
tgacatctgcccacgatcttctagctttcatagtctctagtgagaagtct
ggtgtaattctggtaggtttgcctttatatgttacttgacctttttacct
tactgcttttaatattctttttttaatgcatttggtgttttgattactat
gtgacagcaggaatttcttttctggtccaatctatttggagttctgtaga
cttcttgtatgttcatgggcgtctctttaggttagggaagttttcttcta
tagttttgttgaagatatttgcttgtcctttttaaattgggaatcttcaa
tatcttctatacctattatgcttaggtttcatcttctcactgtgtcctgg
atttcctggatgttttgggtgaggagctttttgctttttacattttcttt
gactgttatttttatgtgaatttgacacaaactacagttatctgaaagaa
ggaagtctcaattcagaaaatgacttcatgagatcaggttgcaggcaagt
ctgtatggtattttcttaattagtgattgatagggagggcccagcccatc
agggtggagctattcctggattggtgtcctgcattgtgtaagaaagaagg
ctgagcaagtcacaccctccatcacctatatatcagctcctgcctctaga
tgcttaccctgctgagttactttctgacttcctttaatgatgaactatgt
tgtgaagtgtagcccagaaacaaatactcagttgcttttgttcatgtgtt
attttagccatagaaccctaagataggacatcatccttaccctcct
gaattcatttgatttacatggtggtatgttcatatcagtagcaggaatag
aacttgtgtgtgtggagcatggcttctctgtggacaccggaaaagaagga
aggaaaagcttactgtgtatactgtaggtcaaaacaggctaggcaatatc
tgagttacaggcttttaatgtttaatcagtgaactgtaagggtctccatt
atcctgatgtggtaggtgagttgatgtgttctttcccagcatgcattaat
tcataccttatgaattaaggcaaaccaaattggtggatgtggaatttgag
gaagttatcttgggccaatgaaatttccaagtggccaactctctcatatg
gataaatgcaaacctggttgtgtcatttcagtttagtgactgaaggcacc
agtattgagacacagggcatttggctttggcttgtatatcagtatacaac
actcagcagttcatacactgtcttcttaatggcattttctctaccagaaa
agaacttatattgttttaaagttggtatacctaaatagtttttttttaaa
gctttttatatctcttttaaaagcctcatttttttttgcatgtgacattg
tggtggttgagtttagcccccaaagactcttgtgtttgaatgcctgcctc
atagagagtgggcactattaggaggtgtggccttgttcaaggaagtgtat
caccgtggaggtaggctttgaggtctcctatatgctcaaccatggccagt
gtaacacagtccctttcttctccttcctgtggatcaagttgtggaactca
gctctttctccaccaccatgtctacttggacactgttatactgccatgcc
tcctgtcttggaggaaaggtgaacttccattcatccctttaaactctgcc
ttgcctctctgctgcacatttatactccattgatctctgttatagtcttc
tgtttaaatacattttggagcttaaaaggacctcagctaaattccacatt
agaagatgttttttgtaataattgaactatagtttttctcctgctgttac
ttagaagaaagatttcttcctttggattctttggattggacaaagattga
gaagacccaggttagcatcaactccaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_81548324_81549454
seq2: B6Ng01-088F04.g_68_1194

seq1  GAATTCATTTGATTTACATGGTGGTATGTTCATATCAGTAGCAGGAATAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTTGATTTACATGGTGGTATGTTCATATCAGTAGCAGGAATAG  50

seq1  AACTTGTGTGTGTGGAGCATGGCTTCTCTGTGGACACCGGAAAAGAAGGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTGTGTGTGTGGAGCATGGCTTCTCTGTGGACACCGGAAAAGAAGGA  100

seq1  AGGAAAAGCTTACTGTGTATACTGTAGGTCAAAACAGGCTAGGCAATATC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAAAGCTTACTGTGTATACTGTAGGTCAAAACAGGCTAGGCAATATC  150

seq1  TGAGTTACAGGCTTTTAATGTTTAATCAGTGAACTGTAAGGGTCTCCATT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTTACAGGCTTTTAATGTTTAATCAGTGAACTGTAAGGGTCTCCATT  200

seq1  ATCCTGATGTGGTAGGTGAGTTGATGTGTTCTTTCCCAGCATGCATTAAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTGATGTGGTAGGTGAGTTGATGTGTTCTTTCCCAGCATGCATTAAT  250

seq1  TCATACCTTATGAATTAAGGCAAACCAAATTGGTGGATGTGGAATTTGAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATACCTTATGAATTAAGGCAAACCAAATTGGTGGATGTGGAATTTGAG  300

seq1  GAAGTTATCTTGGGCCAATGAAATTTCCAAGTGGCCAACTCTCTCATATG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTTATCTTGGGCCAATGAAATTTCCAAGTGGCCAACTCTCTCATATG  350

seq1  GATAAATGCAAACCTGGTTGTGTCATTTCAGTTTAGTGACTGAAGGCACC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAAATGCAAACCTGGTTGTGTCATTTCAGTTTAGTGACTGAAGGCACC  400

seq1  AGTATTGAGACACAGGGCATTTGGCTTTGGCTTGTATATCAGTATACAAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTATTGAGACACAGGGCATTTGGCTTTGGCTTGTATATCAGTATACAAC  450

seq1  ACTCAGCAGTTCATACACTGTCTTCTTAATGGCATTTTCTCTACCAGAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCAGCAGTTCATACACTGTCTTCTTAATGGCATTTTCTCTACCAGAAA  500

seq1  AGAACTTATATTGTTTTAAAGTTGGTATACCTAAATAGTTTTTTTTTAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACTTATATTGTTTTAAAGTTGGTATACCTAAATAGTTTTTTTTTAAA  550

seq1  GCTTTTTATATCTCTTTTAAAAGCCTCATTTTTTTTTGCATGTGACATTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTTTATATCTCTTTTAAAAGCCTCATTTTTTTTTGCATGTGACATTG  600

seq1  TGGTGGTTGAGTTTAGCCCCCAAAGACTCTTGTGTTTGAATGCCTGCCTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGGTTGAGTTTAGCCCCCAAAGACTCTTGTGTTTGAATGCCTGCCTC  650

seq1  ATAGAGAGTGGGCACTATTAGGAGGTGTGGCCTTGTTCAAGGAAGTGTAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGAGAGTGGGCACTATTAGGAGGTGTGGCCTTGTTCAAGGAAGTGTAT  700

seq1  CACCGTGGAGGTAGGCTTTGAGGTCTCCTATATGCTCAACCATGGCCAGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCGTGGAGGTAGGCTTTGAGGTCTCCTATATGCTCAACCATGGCCAGT  750

seq1  GTAACACAGTCCCTTTCTTCTCCTTCCTGTGGATCAAGTTGTGGAACTCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAACACAGTCCCTTTCTTCTCCTTCCTGTGGATCAAGTTGTGGAACTCA  800

seq1  GCTCTTTCTCCACCACCATGTCTACTTGGACACTGTTATACTGCCATGCC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTTTCTCCACCACCATGTCTACTTGGACACTGTTATACTGCCATGCC  850

seq1  TCCTGTCTTGGAGGAAAGGTGAACTTCCATTCATCCCTTTAAACTCTGCC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGTCTTGGAGGAAAGGTGAACTTCCATTCATCCCTTTAAACTCTGCC  900

seq1  TTGCCTCTCTGCTGCACATTTATACTCCATTGATCTCTGTTATAGTCTTC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCCTCTCTGCTGCACATTTATACTCCATTGATCTCTGTTATAGTCTTC  950

seq1  TGTTTAAATACATTTT-GAGCTTAAAA-GAACTCAGGCTAAATTCCACAT  998
      |||||||||||||||| |||||||||| || |||| ||||||||||||||
seq2  TGTTTAAATACATTTTGGAGCTTAAAAGGACCTCA-GCTAAATTCCACAT  999

seq1  TAG-AGATG-TCTTTGTATAAATTGAACTATAGTTTTTCT-CTGCTGTTT  1045
      ||| ||||| | ||||||  |||||||||||||||||||| |||||||| 
seq2  TAGAAGATGTTTTTTGTAATAATTGAACTATAGTTTTTCTCCTGCTGTT-  1048

seq1  AACTTTAGAGAAAGATTTCTTCCCTTTGGAATCTTTGGATTGGACAAAGA  1095
       ||||   ||||||||||||| |||||||| |||||||||||||||||||
seq2  -ACTTAGAAGAAAGATTTCTT-CCTTTGGATTCTTTGGATTGGACAAAGA  1096

seq1  TTTGAAGACACCCAGTGTTAGCATCCAAAACTCCAA  1131
       ||||  | |||||| |||||||||   ||||||||
seq2  -TTGAGAAGACCCAG-GTTAGCATC---AACTCCAA  1127