BAC Information

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BAC

Clone NameB6Ng01-089A18
Chromosome10 (Build37)
Map Location 13,187,480 - 13,345,960
singlet/doubletdoublet
Overlap geneFuca2, Pex3, Deadc1
Upstream geneUtrn, LOC665172, Stx11, Sf3b5, Plagl1, 4930519B02Rik, Ltv1, LOC666829, Phactr2, LOC100039475
Downstream geneAig1, EG666859, Hivep2, Gpr126, LOC100039571, LOC100039409
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-089A18.bB6Ng01-089A18.g
ACCDH901735DH901736
length1,1561,090
definitionDH901735|Mus musculus domesticus DNA, BAC clone: B6Ng01-089A18, 5' end.DH901736|Mus musculus domesticus DNA, BAC clone: B6Ng01-089A18, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(13,187,480 - 13,188,626)(13,344,861 - 13,345,960)
sequence
gaattccattgcataggccaggctagctggcctgcacacttgtgggcttt
ctcctgtttccaccactccactcgcagtaggacacgagagcacactggtt
ctcagtatgtgtccagcttttacacagacaggcatgtaaacctggatctt
ccattccctgagccctgaagttaatccagaagagttgttcatcctgatgc
tcttcctcacaatggtgtatttgagttttaaaatatgatgtagctttctc
ctttttggtggaggtggtggggttccctgagctctttctatgaggggaca
gtgggtgctccagcacactgagacctggcgtgtgtactctgaagtcagga
agatgtggttctgggtccaggatttccctgacacccaatggctgtccgcc
tccaccttttaaaaaccattttccctatctcgaaagggaaggtcgctgtg
aaggtgaagcctggtggtgtgtgcagccagctcaggactgcatcagtcac
agtttgctgccttctcaccctccttcgccacactcttggatctggtacta
gcagagcattcccatgattctgcagagtccccgggtctgggatttcatct
gtactggcctcaggtgggacagagagtcattacttcctctctacaaactg
tctcctgtggctgtggctcagtgagccttgtgcaataggcccctttccct
ggaagctctagggagcttatgagcagctcttgaaaaagaaaatgaactca
tctgcttggttctttttcacgttagaaatctgagaattcaaaactatagt
gcacatgcacccaaacacacctacacacacacacacacacacacacagac
acacacagacacacacacacatacacacatacacacacactcacacacac
tcacacttacccacacatacacagacaccacacacagacacacacacaca
cagacacactcacatctaccacatacacacacacacctacccacacacat
attttaggctactttttgacagatggtctaaccgctaaaatatctgaact
atgtaagccatccttccagttcctataaaatacaaggcagggcccttggt
tggtctggtattattcgggtcctaaaaccactgcgaccaacaagtgaaaa
taagga
gaattcaatatgcagaaattattattcttttcctgttagtgagtcaggag
tagatacagtgtagtagcacagaacattaatctctttggagccatctgat
tttaaaaagggatgtaataaaaattgcaaactcagaaatatagtcacaga
ctccaacatttggccagcacaaatcattagttgtacaaaaccaagaacta
ccaaaaccataaaatccaggagaaatattcttatgcataagaatgagaaa
caaatattcttgtccataagaatgagaatcaaccctgccatccctcttat
gttactttctcatgattttatttttgtatgtaactttcaatagggaaact
tttaaagttatttttctctagtataatctaattattttcccctttgtatt
tagctttaattttgatgtgtggtttcatatataaaattgcattgtgtctt
atctatatatttgtgcttccataattttaggtattgctaaaatccaactt
ctgtataggaggatacattctgaaaaccttggcagttatctgacttggat
ggtacatacatatacataaaaccctgtatgatacccacaatgataacatc
ttgtatacacatccaccaatgataatatttcatttatatattagggacag
taaaaggttatcagcaataaacagtagtgaagtaggtcaattattacagc
agaccaccaaaagttatgtgaatgagatctctcggtctcagtagagtcac
aagaaatatggatcttgttggggagtgcttggctgcattcagctgtgacc
aggaagagtgaagcatgtgaaaaggttgctgagcagatggcctcgtgaac
tcttattcccacaatctcactaggaggcatgcttcagtgcatatatcctg
catatcaatacattcctaaaggagagattacacaccaaaaccaaattaca
gatactctagcagagacctccaaattctgtgacttctctccacttccata
tcctgctaagattgggttggaccagagaagctggcttctggtctgggatg
aagctatagtcttcatagactagctatagtccccatgcta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_13187480_13188626
seq2: B6Ng01-089A18.b_44_1199

seq1  GAATTCCATTGCATAGGCCAGGCTAGCTGGCCTGCACACTTGTGGGCTTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATTGCATAGGCCAGGCTAGCTGGCCTGCACACTTGTGGGCTTT  50

seq1  CTCCTGTTTCCACCACTCCACTCGCAGTAGGACACGAGAGCACACTGGTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTGTTTCCACCACTCCACTCGCAGTAGGACACGAGAGCACACTGGTT  100

seq1  CTCAGTATGTGTCCAGCTTTTACACAGACAGGCATGTAAACCTGGATCTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGTATGTGTCCAGCTTTTACACAGACAGGCATGTAAACCTGGATCTT  150

seq1  CCATTCCCTGAGCCCTGAAGTTAATCCAGAAGAGTTGTTCATCCTGATGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTCCCTGAGCCCTGAAGTTAATCCAGAAGAGTTGTTCATCCTGATGC  200

seq1  TCTTCCTCACAATGGTGTATTTGAGTTTTAAAATATGATGTAGCTTTCTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCCTCACAATGGTGTATTTGAGTTTTAAAATATGATGTAGCTTTCTC  250

seq1  CTTTTTGGTGGAGGTGGTGGGGTTCCCTGAGCTCTTTCTATGAGGGGACA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTTGGTGGAGGTGGTGGGGTTCCCTGAGCTCTTTCTATGAGGGGACA  300

seq1  GTGGGTGCTCCAGCACACTGAGACCTGGCGTGTGTACTCTGAAGTCAGGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGGTGCTCCAGCACACTGAGACCTGGCGTGTGTACTCTGAAGTCAGGA  350

seq1  AGATGTGGTTCTGGGTCCAGGATTTCCCTGACACCCAATGGCTGTCCGCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGTGGTTCTGGGTCCAGGATTTCCCTGACACCCAATGGCTGTCCGCC  400

seq1  TCCACCTTTTAAAAACCATTTTCCCTATCTCGAAAGGGAAGGTCGCTGTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACCTTTTAAAAACCATTTTCCCTATCTCGAAAGGGAAGGTCGCTGTG  450

seq1  AAGGTGAAGCCTGGTGGTGTGTGCAGCCAGCTCAGGACTGCATCAGTCAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTGAAGCCTGGTGGTGTGTGCAGCCAGCTCAGGACTGCATCAGTCAC  500

seq1  AGTTTGCTGCCTTCTCACCCTCCTTCGCCACACTCTTGGATCTGGTACTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTGCTGCCTTCTCACCCTCCTTCGCCACACTCTTGGATCTGGTACTA  550

seq1  GCAGAGCATTCCCATGATTCTGCAGAGTCCCCGGGTCTGGGATTTCATCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGAGCATTCCCATGATTCTGCAGAGTCCCCGGGTCTGGGATTTCATCT  600

seq1  GTACTGGCCTCAGGTGGGACAGAGAGTCATTACTTCCTCTCTACAAACTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACTGGCCTCAGGTGGGACAGAGAGTCATTACTTCCTCTCTACAAACTG  650

seq1  TCTCCTGTGGCTGTGGCTCAGTGAGCCTTGTGCAATAGGCCCC-TTCCCT  699
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  TCTCCTGTGGCTGTGGCTCAGTGAGCCTTGTGCAATAGGCCCCTTTCCCT  700

seq1  GGAAGCTCTAGGGAGCTTATGAGCAGCTCTTGAAAAAGAAAATGAACTCA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGCTCTAGGGAGCTTATGAGCAGCTCTTGAAAAAGAAAATGAACTCA  750

seq1  TCTGCTTGGTTCTTTTTCACGTTAGAAATCTGAGAA-TCAAAACTATAGT  798
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  TCTGCTTGGTTCTTTTTCACGTTAGAAATCTGAGAATTCAAAACTATAGT  800

seq1  GCACATGCACCCAAACACACCTACACACACACACACACACACACACAGAC  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACATGCACCCAAACACACCTACACACACACACACACACACACACAGAC  850

seq1  ACACACAGACACACACACACATACACACATACACACACACTCACACACAC  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACAGACACACACACACATACACACATACACACACACTCACACACAC  900

seq1  TCACACCTACACACACATACACAGACACACACACACAGACACACACACAC  948
      |||||| ||| ||||||||||||||||| |||||||||||||||||||||
seq2  TCACACTTACCCACACATACACAGACAC-CACACACAGACACACACACAC  949

seq1  ACAGACACACACACA-CTCACACACACACACACACACCTACACACACACA  997
      |||||||||| |||| ||  |||| |||||||||||||||| ||||||||
seq2  ACAGACACACTCACATCTACCACATACACACACACACCTACCCACACACA  999

seq1  TACTTTAGGCTACTTTTTGACAGAT-GTCTAA-CGCTAAAATATCTGACC  1045
      || |||||||||||||||||||||| |||||| ||||||||||||||| |
seq2  TATTTTAGGCTACTTTTTGACAGATGGTCTAACCGCTAAAATATCTGAAC  1049

seq1  TAGTTAAGCCATTCAT-CAGTTCC-AT-AAATATCAAGCA-GGCACTTGT  1091
      ||  |||||||| | | ||||||| || |||||  | ||| ||| |||| 
seq2  TATGTAAGCCATCCTTCCAGTTCCTATAAAATACAAGGCAGGGCCCTTGG  1099

seq1  ATGTACT-GTATATATCAGGTCCTAAAACCTAGGC-ACCAACAATGCAAA  1139
       ||  || ||||   || ||||||||||||   || |||||||| |  ||
seq2  TTGGTCTGGTATTATTCGGGTCCTAAAACCACTGCGACCAACAA-GTGAA  1148

seq1  AATAAGGA  1147
      ||||||||
seq2  AATAAGGA  1156

seq1: chr10_13344861_13345960
seq2: B6Ng01-089A18.g_69_1158 (reverse)

seq1  TAGCATGGGGGACATAGCTAGTCTATGAAAGACTATAGC-TCATCCCAGG  49
      ||||||||||   |||||||||||||| ||||||||||| ||||||||| 
seq2  TAGCATGGGGACTATAGCTAGTCTATG-AAGACTATAGCTTCATCCCAGA  49

seq1  ACAGAAGACCAGCTTCTCTGGGTCCAACCCAATCCTTAGCAGGATATGGA  99
       |||||| ||||||||||| ||||||||||||| ||||||||||||||||
seq2  CCAGAAG-CCAGCTTCTCT-GGTCCAACCCAAT-CTTAGCAGGATATGGA  96

seq1  AGTGGGAGAGAAGTCACAGAATTTGGAGGTCTCTGCTAGAGGTATCCTGT  149
      ||| |||||||||||||||||||||||||||||||||||| |||| ||||
seq2  AGT-GGAGAGAAGTCACAGAATTTGGAGGTCTCTGCTAGA-GTAT-CTGT  143

seq1  AATTTGGTTTTGGTGTGTAATCTTCTCCTTTAGGAATGTTATTGATAATG  199
      |||||||||||||||||||||| ||||||||||||||| ||||||| |||
seq2  AATTTGGTTTTGGTGTGTAATC-TCTCCTTTAGGAATG-TATTGAT-ATG  190

seq1  CAGGATATATGCACTGAAGCATGCCTCCTAGTGAGATTGTGGGAATAAGA  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGATATATGCACTGAAGCATGCCTCCTAGTGAGATTGTGGGAATAAGA  240

seq1  GTTCACGAGGCCATCCTGCTCAGCAACCTTTTCACATGCTTCACTCTTCC  299
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  GTTCACGAGGCCAT-CTGCTCAGCAACCTTTTCACATGCTTCACTCTTCC  289

seq1  TGGTCACAGCTGAATGCAGCCAAGCACTCCCCAACAAGATCCATATTTCT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTCACAGCTGAATGCAGCCAAGCACTCCCCAACAAGATCCATATTTCT  339

seq1  TGTGACTCTACTGAGACCGAGAGATCTCATTCACATAACTTTTGGTGGTC  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGACTCTACTGAGACCGAGAGATCTCATTCACATAACTTTTGGTGGTC  389

seq1  TGCTGTAATAATTGACCTACTTCACTACTGTTTATTGCTGATAACCTTTT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGTAATAATTGACCTACTTCACTACTGTTTATTGCTGATAACCTTTT  439

seq1  ACTGTCCCTAATATATAAATGAAATATTATCATTGGTGGATGTGTATACA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTCCCTAATATATAAATGAAATATTATCATTGGTGGATGTGTATACA  489

seq1  AGATGTTATCATTGTGGGTATCATACAGGGTTTTATGTATATGTATGTAC  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGTTATCATTGTGGGTATCATACAGGGTTTTATGTATATGTATGTAC  539

seq1  CATCCAAGTCAGATAACTGCCAAGGTTTTCAGAATGTATCCTCCTATACA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCCAAGTCAGATAACTGCCAAGGTTTTCAGAATGTATCCTCCTATACA  589

seq1  GAAGTTGGATTTTAGCAATACCTAAAATTATGGAAGCACAAATATATAGA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTTGGATTTTAGCAATACCTAAAATTATGGAAGCACAAATATATAGA  639

seq1  TAAGACACAATGCAATTTTATATATGAAACCACACATCAAAATTAAAGCT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGACACAATGCAATTTTATATATGAAACCACACATCAAAATTAAAGCT  689

seq1  AAATACAAAGGGGAAAATAATTAGATTATACTAGAGAAAAATAACTTTAA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATACAAAGGGGAAAATAATTAGATTATACTAGAGAAAAATAACTTTAA  739

seq1  AAGTTTCCCTATTGAAAGTTACATACAAAAATAAAATCATGAGAAAGTAA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTTCCCTATTGAAAGTTACATACAAAAATAAAATCATGAGAAAGTAA  789

seq1  CATAAGAGGGATGGCAGGGTTGATTCTCATTCTTATGGACAAGAATATTT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAAGAGGGATGGCAGGGTTGATTCTCATTCTTATGGACAAGAATATTT  839

seq1  GTTTCTCATTCTTATGCATAAGAATATTTCTCCTGGATTTTATGGTTTTG  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCTCATTCTTATGCATAAGAATATTTCTCCTGGATTTTATGGTTTTG  889

seq1  GTAGTTCTTGGTTTTGTACAACTAATGATTTGTGCTGGCCAAATGTTGGA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGTTCTTGGTTTTGTACAACTAATGATTTGTGCTGGCCAAATGTTGGA  939

seq1  GTCTGTGACTATATTTCTGAGTTTGCAATTTTTATTACATCCCTTTTTAA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGTGACTATATTTCTGAGTTTGCAATTTTTATTACATCCCTTTTTAA  989

seq1  AATCAGATGGCTCCAAAGAGATTAATGTTCTGTGCTACTACACTGTATCT  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCAGATGGCTCCAAAGAGATTAATGTTCTGTGCTACTACACTGTATCT  1039

seq1  ACTCCTGACTCACTAACAGGAAAAGAATAATAATTTCTGCATATTGAATT  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCCTGACTCACTAACAGGAAAAGAATAATAATTTCTGCATATTGAATT  1089

seq1  C  1100
      |
seq2  C  1090