BAC Information

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BAC

Clone NameB6Ng01-089G08
Chromosome10 (Build37)
Map Location 53,076,446 - 53,226,152
singlet/doubletdoublet
Overlap geneEG432460
Upstream geneGopc, EG668294, Nepn, D10Ertd438e, EG629689, Zfa, Slc35f1, Pln
Downstream geneMcm9, Asf1a, LOC100042554, 4930589M24Rik, Man1a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-089G08.bB6Ng01-089G08.g
ACCDH901984DH901985
length1,1361,140
definitionDH901984|Mus musculus domesticus DNA, BAC clone: B6Ng01-089G08, 5' end.DH901985|Mus musculus domesticus DNA, BAC clone: B6Ng01-089G08, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(53,076,446 - 53,077,611)(53,224,996 - 53,226,152)
sequence
gaattcatttgaaagtcagttttttgcagatgaaatcaaaatgaagatat
cagatagaattaggcagaaacaaatgcgactgactggtactttcaaatgc
atttaccttataaggaaaagaaagagcaagatctaaagacaaagaggaca
tgaaaaggagacagcgaccaggaaaggatgtcataggctgccagaaaacc
ccatgccttttgcctaaggccttcagagaaaagagcttcccaacatcctg
gttttacacagtctaaaaccttcaaggaaataaaggtgaatcttccctgc
tgatttgcatagacataagctatgtaagtggtgacaattcacaacaaacc
tggaacagcagcacccaagccattctaaggactcgtgggtctatatgctg
atttagggtttagatacttggggccttctaacaaatttaacagttcattt
ggggtaaggaggcaagttcttacttactatgtagcccctggctacctgga
actcacagatatctgcctgcctgtatctctcaagttctgggattaaagat
aggacattatgcccatatgctaacaattgtttaagttattaatctgatca
ttcctagaattatctttcacattcttatcctaatatgactgtttttcttt
cctttaaaaaaaataataaacctgattctaggacccaggtcttcctactt
cagttaaactctcctagataattcaaaatcctctgaaggtaaaatgaaaa
ttaaccatccaagtgcaattgtggtacattcaaatggcaacggtccccat
aggctcaaatgtctgaatccttggtagaactgtttgggaaggattaggag
gtatggtcttgttaaaggagggtgagtaagtcactgggacagcttgagta
tcaaagattccagcccttcccagtgcactctctgactcctgtttagggct
cagatgtgagcgctcagctctgctctagcagctactgcccagaactctgt
cccctcatacatgctacctctagactgtatagatactgtctcagattggg
tcttatctagcaccgcaagtagtaatacaatagttgcaaacagtcatcat
tatgatgattatcacctgtgaactgataatagagga
gaattctctggtttgaatagcctcctgcaaatcttattgcctggaccaaa
gaactaggacctaaggttttatgtaaatatatgtatatattgggcaagtc
caacagggcttgtaggtgctatcatttgcataaacagtgggtgtgagaac
ctccctaggaagtttatgaaaactagctcctctctttgatctttctgggt
ccaattttattttttaatgcaatgaagaaatttcattttcttttttcttt
tttaaacaaagcttctccttttcttttgaattcttttaaagagaactctt
gttgctgaaacaaaaaatagaccaatacactaccatgaaagggccattat
tccacaactggaaacatctagacaattaccctttggataaaatgtagtct
ttgacaagatcataattggctgcatctagggataaacactgtaatgaagg
tactgatgatcaataatggcctgtctttcagttggacgcacagagtggat
ttacagtcctaggttcttcttctaactggctccttccagaatctgctttt
tttttcctccctgaaagtagaagtttgggttgtggaggaagtagcacact
taaaggcatcctgccccacccccttgcagtttacaaatgtctaccagaat
aatgctgagaggacaaaaagaggaaagagaaaggaggtttttgtaaaggg
aagaatttgcctctggtcatgtctagcatgagtgtcccatattattattt
ctgcaatgtggctcagtggacaggaaatacggtatgacatgttttcagta
gtaggatcaagctgctaccttaccagtcactcagccaagggctatgttaa
attctatgaataaactcctttgttcacaactatccatacaacaagactca
caattttatttatagtaaggaccctgaggcttaaaagcatcaaacagctt
gctcagatcatatagcaagacgtgtttgagcaaaattgaatccaggtcgt
gtgcattagagtctcactggctaaacccattcttattaattgtgtaaaac
ttcatgtgttcctatgctttgcagatgagaaagctggtttggctagtaaa
tgacccaagttcactacacaatacagtgagagatcaggct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_53076446_53077611
seq2: B6Ng01-089G08.b_47_1182

seq1  GAATTCATTTGAAAGTCAGTTTTTTGCAGATGAAATCAAAATGAAGATAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTTGAAAGTCAGTTTTTTGCAGATGAAATCAAAATGAAGATAT  50

seq1  CAGATAGAATTAGGCAGAAACAAATGCGACTGACTGGTACTTTCAAATGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATAGAATTAGGCAGAAACAAATGCGACTGACTGGTACTTTCAAATGC  100

seq1  ATTTACCTTATAAGGAAAAGAAAGAGCAAGATCTAAAGACAAAGAGGACA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTACCTTATAAGGAAAAGAAAGAGCAAGATCTAAAGACAAAGAGGACA  150

seq1  TGAAAAGGAGACAGCGACCAGGAAAGGATGTCATAGGCTGCCAGAAAACC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAAGGAGACAGCGACCAGGAAAGGATGTCATAGGCTGCCAGAAAACC  200

seq1  CCATGCCTTTTGCCTAAGGCCTTCAGAGAAAAGAGCTTCCCAACATCCTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGCCTTTTGCCTAAGGCCTTCAGAGAAAAGAGCTTCCCAACATCCTG  250

seq1  GTTTTACACAGTCTAAAACCTTCAAGGAAATAAAGGTGAATCTTCCCTGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTACACAGTCTAAAACCTTCAAGGAAATAAAGGTGAATCTTCCCTGC  300

seq1  TGATTTGCATAGACATAAGCTATGTAAGTGGTGACAATTCACAACAAACC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTTGCATAGACATAAGCTATGTAAGTGGTGACAATTCACAACAAACC  350

seq1  TGGAACAGCAGCACCCAAGCCATTCTAAGGACTCGTGGGTCTATATGCTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAACAGCAGCACCCAAGCCATTCTAAGGACTCGTGGGTCTATATGCTG  400

seq1  ATTTAGGGTTTAGATACTTGGGGCCTTCTAACAAATTTAACAGTTCATTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTAGGGTTTAGATACTTGGGGCCTTCTAACAAATTTAACAGTTCATTT  450

seq1  GGGGTAAGGAGGCAAGTTCTTACTTACTATGTAGCCCCTGGCTACCTGGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGTAAGGAGGCAAGTTCTTACTTACTATGTAGCCCCTGGCTACCTGGA  500

seq1  ACTCACAGATATCTGCCTGCCTGTATCTCTCAAGTTCTGGGATTAAAGAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCACAGATATCTGCCTGCCTGTATCTCTCAAGTTCTGGGATTAAAGAT  550

seq1  AGGACATTATGCCCATATGCTAACAATTGTTTAAGTTATTAATCTGATCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGACATTATGCCCATATGCTAACAATTGTTTAAGTTATTAATCTGATCA  600

seq1  TTCCTAGAATTATCTTTCACATTCTTATCCTAATATGACTGTTTTTCTTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTAGAATTATCTTTCACATTCTTATCCTAATATGACTGTTTTTCTTT  650

seq1  CCTTTAAAAAAAATAATAAACCTGATTCTAGGACCCAGGTCTTCCTACTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTAAAAAAAATAATAAACCTGATTCTAGGACCCAGGTCTTCCTACTT  700

seq1  CAGTTAAACTCTCCTAGATAATTCAAAATCCTCTGAAGGTAAAATGAAAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTAAACTCTCCTAGATAATTCAAAATCCTCTGAAGGTAAAATGAAAA  750

seq1  TTAACCATCCAAGTGCAATTGTGGTACATTCAAATGGCAACGGTCCCCAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAACCATCCAAGTGCAATTGTGGTACATTCAAATGGCAACGGTCCCCAT  800

seq1  AGGCTCAAATGTCTGAATCCTTGGTAGAACTGTTTGGGAAGGATTAGGAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTCAAATGTCTGAATCCTTGGTAGAACTGTTTGGGAAGGATTAGGAG  850

seq1  GTATGGTCTTGTTAAAGGAGGGTGAGTAAGTCACTGGAACAGGCTTGAGG  900
      ||||||||||||||||||||||||||||||||||||| ||| |||||| |
seq2  GTATGGTCTTGTTAAAGGAGGGTGAGTAAGTCACTGGGACA-GCTTGA-G  898

seq1  TATCAAAAGATTCCAGCCCTTCCCAGTGCACTCTCTGACTCCTGTTTAGG  950
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  TATC-AAAGATTCCAGCCCTTCCCAGTGCACTCTCTGACTCCTGTTTAGG  947

seq1  GCTCAAGATGTGAGCGCTCAGCTCCTGCTCTAGCAGCTTACTGCCCAGAA  1000
      |||| |||||||||||||||||| ||||||||||||| ||||||||||||
seq2  GCTC-AGATGTGAGCGCTCAGCT-CTGCTCTAGCAGC-TACTGCCCAGAA  994

seq1  CCTCTGTTCCCCCTTCATACATGCTAACCCTCTAGAACTGTATTAGATAC  1050
       ||||||   ||| ||||||||||||  ||||||| |||||| |||||||
seq2  -CTCTGT---CCCCTCATACATGCTA--CCTCTAG-ACTGTA-TAGATAC  1036

seq1  TGTCTCAGTATTGGGGTCTTATCATAGCAACGCAAAGTAAGTAATACAAT  1100
      |||||||| ||| |||||||||| ||||| ||| |||| |||||||||||
seq2  TGTCTCAG-ATT-GGGTCTTATC-TAGCACCGC-AAGT-AGTAATACAAT  1081

seq1  AAGTGGCGATACGAGTTCATCTATTATGATGAATGTACTACTCTGGTTGA  1150
       ||| || | || || ||||| ||||||||||   ||  || |||  |||
seq2  -AGTTGC-AAAC-AG-TCATC-ATTATGATGA--TTATCAC-CTG--TGA  1121

seq1  ACAGTGATAATA-AGGA  1166
      ||  |||||||| ||||
seq2  AC--TGATAATAGAGGA  1136

seq1: chr10_53224996_53226152
seq2: B6Ng01-089G08.g_70_1209 (reverse)

seq1  AGCCTGATC-CTCAACTGTATTGTCGTAGCTGCAACCTTGGGTCAATTAA  49
      ||||||||| ||| |||||||||| |||| ||  | |||||||| ||| |
seq2  AGCCTGATCTCTC-ACTGTATTGT-GTAG-TG--AACTTGGGTC-ATTTA  44

seq1  CTAGCCCAAACCAGCTTTCTCATCTGCAAAGCATAAGGAACACATGGAGG  99
      |||| ||||||||||||||||||||||||||||| |||||||||| || |
seq2  CTAG-CCAAACCAGCTTTCTCATCTGCAAAGCAT-AGGAACACAT-GAAG  91

seq1  TTTTACACAAATTAAATAAGAATGGTTTAAGCCAGTGAGACTCCTAATGC  149
      ||||||||||  | ||||||||||| || ||||||||||||| |||||| 
seq2  TTTTACACAA--TTAATAAGAATGGGTTTAGCCAGTGAGACT-CTAATG-  137

seq1  CACACTGACCTGGATTCAAATTTTGCCTCAAACACGTCCTTGCTATATGA  199
      ||||| ||||||||||| ||||||| ||||||||||| ||||||||||||
seq2  CACAC-GACCTGGATTC-AATTTTG-CTCAAACACGT-CTTGCTATATGA  183

seq1  TCTGGGCAAGCTGTTTGATGCTTTTAAGCCTCAGGGTCCTTACTATAAAT  249
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGAGCAAGCTGTTTGATGCTTTTAAGCCTCAGGGTCCTTACTATAAAT  233

seq1  AATAATTGTGAGTCTTGTTGTATTGGATAGTTGTGAACAAAGGAGTTTAT  299
      || ||||||||||||||||||| |||||||||||||||||||||||||||
seq2  AA-AATTGTGAGTCTTGTTGTA-TGGATAGTTGTGAACAAAGGAGTTTAT  281

seq1  TCATAGAATTTAACATAGCCCTTGGCTGAGTGACTGGTAAGGTAGCAGCT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATAGAATTTAACATAGCCCTTGGCTGAGTGACTGGTAAGGTAGCAGCT  331

seq1  TGATCCTACTACTGAAAACATGTCATACCGTATTTCCTGTCCACTGAGCC  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATCCTACTACTGAAAACATGTCATACCGTATTTCCTGTCCACTGAGCC  381

seq1  ACATTGCAG-AATAATAATATGGGACACTCATGCTAGACATGACCAGAGG  448
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  ACATTGCAGAAATAATAATATGGGACACTCATGCTAGACATGACCAGAGG  431

seq1  CAAATTCTTCCCTTTACAAAAACCTCCTTTCTCTTTCCTCTTTTTGTCCT  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATTCTTCCCTTTACAAAAACCTCCTTTCTCTTTCCTCTTTTTGTCCT  481

seq1  CTCAGCATTATTCTGGTAGACATTTGTAAACTGCAAGGGGGTGGGGCAGG  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGCATTATTCTGGTAGACATTTGTAAACTGCAAGGGGGTGGGGCAGG  531

seq1  ATGCCTTTAAGTGTGCTACTTCCTCCACAACCCAAACTTCTACTTTCAGG  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCCTTTAAGTGTGCTACTTCCTCCACAACCCAAACTTCTACTTTCAGG  581

seq1  GAGGAAAAAAAAAGCAGATTCTGGAAGGAGCCAGTTAGAAGAAGAACCTA  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGAAAAAAAAAGCAGATTCTGGAAGGAGCCAGTTAGAAGAAGAACCTA  631

seq1  GGACTGTAAATCCACTCTGTGCGTCCAACTGAAAGACAGGCCATTATTGA  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACTGTAAATCCACTCTGTGCGTCCAACTGAAAGACAGGCCATTATTGA  681

seq1  TCATCAGTACCTTCATTACAGTGTTTATCCCTAGATGCAGCCAATTATGA  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATCAGTACCTTCATTACAGTGTTTATCCCTAGATGCAGCCAATTATGA  731

seq1  TCTTGTCAAAGACTACATTTTATCCAAAGGGTAATTGTCTAGATGTTTCC  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGTCAAAGACTACATTTTATCCAAAGGGTAATTGTCTAGATGTTTCC  781

seq1  AGTTGTGGAATAATGGCCCTTTCATGGTAGTGTATTGGTCTATTTTTTGT  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTGTGGAATAATGGCCCTTTCATGGTAGTGTATTGGTCTATTTTTTGT  831

seq1  TTCAGCAACAAGAGTTCTCTTTAAAAGAATTCAAAAGAAAAGGAGAAGCT  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGCAACAAGAGTTCTCTTTAAAAGAATTCAAAAGAAAAGGAGAAGCT  881

seq1  TTGTTTAAAAAAGAAAAAAGAAAATGAAATTTCTTCATTGCATTAAAAAA  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTTAAAAAAGAAAAAAGAAAATGAAATTTCTTCATTGCATTAAAAAA  931

seq1  TAAAATTGGACCCAGAAAGATCAAAGAGAGGAGCTAGTTTTCATAAACTT  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAATTGGACCCAGAAAGATCAAAGAGAGGAGCTAGTTTTCATAAACTT  981

seq1  CCTAGGGAGGTTCTCACACCCACTGTTTATGCAAATGATAGCACCTACAA  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAGGGAGGTTCTCACACCCACTGTTTATGCAAATGATAGCACCTACAA  1031

seq1  GCCCTGTTGGACTTGCCCAATATATACATATATTTACATAAAACCTTAGG  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCTGTTGGACTTGCCCAATATATACATATATTTACATAAAACCTTAGG  1081

seq1  TCCTAGTTCTTTGGTCCAGGCAATAAGATTTGCAGGAGGCTATTCAAACC  1148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTAGTTCTTTGGTCCAGGCAATAAGATTTGCAGGAGGCTATTCAAACC  1131

seq1  AGAGAATTC  1157
      |||||||||
seq2  AGAGAATTC  1140