BAC Information

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BAC

Clone NameB6Ng01-092F01
Chromosome10 (Build37)12 (Build37)
Map Location 20,540,802 - 20,542,049110,829,409 - 110,829,462
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneSlc35d3, Pex7, Map3k5, Mtap7, EG621697, Bclaf1, 2610016C23Rik, LOC382344, Pde7b
Downstream geneLOC667202, Ahi1, Myb, LOC100039870, Hbs1l, Aldh8a1, LOC100039906, 1700020N01Rik, EG432436, LOC100039936
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-092F01.bB6Ng01-092F01.g
ACCDH904108DH904109
length1,235507
definitionDH904108|Mus musculus domesticus DNA, BAC clone: B6Ng01-092F01, 5' end.DH904109|Mus musculus domesticus DNA, BAC clone: B6Ng01-092F01, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(20,540,802 - 20,542,049)(110,829,409 - 110,829,462)
sequence
gaattcctctgttttggggttcttccggagcaagcttagtaagtatgctc
tccaggttgcttagcattaaagagaactaagacttcccactctggcattg
gccttaggaattatccttggatttgtgtcaggaactgtctggagagtttg
gggaatgttattagatgcatggtagtctgaaatggtcatgtatctcttag
ggttacctgtatctcttaggtcaggggttctcagccttcctaatgttacg
accctttaatatagttcctcagagtgtggtaatccccaaccataaattta
ttttgttgcaatttcataactgtaatttggctactgttgtgaattgtaat
gtaaaccatctgataagtaggatatctgatatgtgaacccccaaagggtc
atgacccacagactgagacccactatcctaggttgtactggtcattgtta
ggtagtggtcatctttgaaacactaatgctttaagagcttgattgaattt
tcatgtagctctactagccacatgatgtactattattttccaaggttgtt
ttctaatcttctaacttttctatgctctttgactttaagtctatccattg
ttttttgattctatttgacagtctccatcccttaacttacaagtttaatg
tatttatagcatattattattgttaatatatagaatcatttctaccacct
tgtataatttttggtcttatttttgctgttgcttgttatcttcatcttcc
tgtttcttaaagtgcttaacattttgattttgtgttttagtttttttttt
tcttttagtattttgggagccctgcatctgccccttcagttgttgcccat
gtgttttcacatgtgtgctatttaagaaggggaaataactcagtgtatct
cctttccttccaaataatcaggatttagagctctgtgtcttcctctttct
acattcttggtgtctgcactgccgttttattgctgctgtaacaaattata
acaaacgagtcagctagccaactaaggttttctgtctacatagaattccc
tgcagtaaatcaaggtataataaaaggggatttctttcctaagccttgag
agaatccctctattgcccttcagtctcggagaccctccgcatttcctggt
gactcttatctcagccgagagaacattaacccttctaatgcctgccaagc
ctgaacttatgttgccgaagcgagactgaattcac
ttcacataaacggaaaaacctcttccataggaaactacaaaagcccaatg
ccttgactctgagaggaggaagcgggaactatgcttgaactcatttgcag
ttttctgaacaggaccctgtcagctcaggaattgcaaccaacaactaaga
agcagggcctcataaatcaagattctcacgtggccaaggataccactcct
caattaaagaggcagattacagaaatgctgaaagtctttaccagcagcac
agagggttagtatttaaaatgtaaaatgaactgaaaaaaagaaaaagaaa
agacaacccaataaaaaatgttagtacagaactaaacagtgttttcaaaa
aatgaaatacaaactactgagaaacacttaaaagtgttcaatgtccttgg
acatcagggaattgcaaattaaaacttctttgagatttgatctcgccaaa
gtcagagtggcagaggagaggaggaggagaagaggaagaagaggaggagg
aagagga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_20540802_20542049
seq2: B6Ng01-092F01.b_45_1279

seq1  GAATTCCTCTGTTTTGGGGTTCTTCCGGAGCAAGCTTAGTAAGTATGCTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTCTGTTTTGGGGTTCTTCCGGAGCAAGCTTAGTAAGTATGCTC  50

seq1  TCCAGGTTGCTTAGCATTAAAGAGAACTAAGACTTCCCACTCTGGCATTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGGTTGCTTAGCATTAAAGAGAACTAAGACTTCCCACTCTGGCATTG  100

seq1  GCCTTAGGAATTATCCTTGGATTTGTGTCAGGAACTGTCTGGAGAGTTTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTAGGAATTATCCTTGGATTTGTGTCAGGAACTGTCTGGAGAGTTTG  150

seq1  GGGAATGTTATTAGATGCATGGTAGTCTGAAATGGTCATGTATCTCTTAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAATGTTATTAGATGCATGGTAGTCTGAAATGGTCATGTATCTCTTAG  200

seq1  GGTTACCTGTATCTCTTAGGTCAGGGGTTCTCAGCCTTCCTAATGTTACG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTACCTGTATCTCTTAGGTCAGGGGTTCTCAGCCTTCCTAATGTTACG  250

seq1  ACCCTTTAATATAGTTCCTCAGAGTGTGGTAATCCCCAACCATAAATTTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCTTTAATATAGTTCCTCAGAGTGTGGTAATCCCCAACCATAAATTTA  300

seq1  TTTTGTTGCAATTTCATAACTGTAATTTGGCTACTGTTGTGAATTGTAAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGTTGCAATTTCATAACTGTAATTTGGCTACTGTTGTGAATTGTAAT  350

seq1  GTAAACCATCTGATAAGTAGGATATCTGATATGTGAACCCCCAAAGGGTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAACCATCTGATAAGTAGGATATCTGATATGTGAACCCCCAAAGGGTC  400

seq1  ATGACCCACAGACTGAGACCCACTATCCTAGGTTGTACTGGTCATTGTTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGACCCACAGACTGAGACCCACTATCCTAGGTTGTACTGGTCATTGTTA  450

seq1  GGTAGTGGTCATCTTTGAAACACTAATGCTTTAAGAGCTTGATTGAATTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAGTGGTCATCTTTGAAACACTAATGCTTTAAGAGCTTGATTGAATTT  500

seq1  TCATGTAGCTCTACTAGCCACATGATGTACTATTATTTTCCAAGGTTGTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGTAGCTCTACTAGCCACATGATGTACTATTATTTTCCAAGGTTGTT  550

seq1  TTCTAATCTTCTAACTTTTCTATGCTCTTTGACTTTAAGTCTATCCATTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTAATCTTCTAACTTTTCTATGCTCTTTGACTTTAAGTCTATCCATTG  600

seq1  TTTTTTGATTCTATTTGACAGTCTCCATCCCTTAACTTACAAGTTTAATG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTGATTCTATTTGACAGTCTCCATCCCTTAACTTACAAGTTTAATG  650

seq1  TATTTATAGCATATTATTATTGTTAATATATAGAATCATTTCTACCACCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTATAGCATATTATTATTGTTAATATATAGAATCATTTCTACCACCT  700

seq1  TGTATAATTTTTGGTCTTATTTTTGCTGTTGCTTGTTATCTTCATCTTCC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATAATTTTTGGTCTTATTTTTGCTGTTGCTTGTTATCTTCATCTTCC  750

seq1  TGTTTCTTAAAGTGCTTAACATTTTGATTTTGTGTTTTAGTTTTTTTTTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTCTTAAAGTGCTTAACATTTTGATTTTGTGTTTTAGTTTTTTTTTT  800

seq1  --CTTTAGTATTTTGGGAGCCCTGCATCTGCCCCTTCAGTTGTTGCCCAT  848
         |||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTTAGTATTTTGGGAGCCCTGCATCTGCCCCTTCAGTTGTTGCCCAT  850

seq1  GTGTTTTCACATGTGTGCTATTTAAGAAGGGGAAATAACTCAGTGTATCT  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTTTCACATGTGTGCTATTTAAGAAGGGGAAATAACTCAGTGTATCT  900

seq1  CCTTTCCTTCCAAAATAATCAGGATTTAGAGCTCTGTGTCTTCCTCTTTC  948
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  CCTTTCCTTCC-AAATAATCAGGATTTAGAGCTCTGTGTCTTCCTCTTTC  949

seq1  TACATTCTTGGTGTCTGCACTGCCGTTTTATTGCTGCTGTAACAAATTAT  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATTCTTGGTGTCTGCACTGCCGTTTTATTGCTGCTGTAACAAATTAT  999

seq1  AACAAACGAGTCAGCTTAGCCAACTAAAGTTTTCTGTCTACATAGAATTC  1048
      ||||||||||||||| ||||||||||| ||||||||||||||||||||||
seq2  AACAAACGAGTCAGC-TAGCCAACTAAGGTTTTCTGTCTACATAGAATTC  1048

seq1  ACTGCAGTAAAATCAAGGTATAATAAAAAGGTGGATTTCTTCCATAGGCT  1098
       ||||||| |||||||||||||||||||  | ||||||||| | || || 
seq2  CCTGCAGT-AAATCAAGGTATAATAAAA--GGGGATTTCTTTCCTAAGCC  1095

seq1  TTGAGTAGACT-CCTCATTTGCCTTTTCAGCTTCCAGAGACCATCCGCAT  1147
      ||||| ||| | ||||  |||||  ||||| |  | |||||| |||||||
seq2  TTGAG-AGAATCCCTCTATTGCC-CTTCAG-TCTCGGAGACCCTCCGCAT  1142

seq1  T--CCGTTGACCTCTATCTTCATAGCCAGGAGGACAATAAACCCTTCTCA  1195
      |  | | ||||   |||||    ||||  ||| || || ||||||||| |
seq2  TTCCTGGTGACTCTTATCT---CAGCCGAGAGAAC-ATTAACCCTTCTAA  1188

seq1  TAATGCGCTTGCTCAGGCTGACTTTATGTTGCCCAAGCTGAGACTGAATT  1245
      |     || |||  || ||||  |||||||||| |||| |||||||||||
seq2  T-----GCCTGCCAAGCCTGAACTTATGTTGCCGAAGC-GAGACTGAATT  1232

seq1  CAC  1248
      |||
seq2  CAC  1235

seq1: chr12_110829409_110829462
seq2: B6Ng01-092F01.g_533_578 (reverse)

seq1  TCCTCTTCCTCCTCCTCTTCCTCCTCATCCTCTTCTTCCTCCTCTTCCTC  50
      |||||||||||||||||||| ||||| ||       |||||||| | |||
seq2  TCCTCTTCCTCCTCCTCTTCTTCCTCTTC-------TCCTCCTCCT-CTC  42

seq1  CTCT  54
      ||||
seq2  CTCT  46