BAC Information

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BAC

Clone NameB6Ng01-093G03
Chromosome1 (Build37)10 (Build37)
Map Location 111,725,881 - 111,727,077104,053,903 - 104,054,363
singlet/doubletsingletsinglet
Overlap genenone
Upstream genenone
Downstream geneEG666508, Cdh7, LOC100041429, EG626652
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-093G03.bB6Ng01-093G03.g
ACCDH904889DH904890
length1,183915
definitionDH904889|Mus musculus domesticus DNA, BAC clone: B6Ng01-093G03, 5' end.DH904890|Mus musculus domesticus DNA, BAC clone: B6Ng01-093G03, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(111,725,881 - 111,727,077)(104,053,903 - 104,054,363)
sequence
gaattcacttgagccatctctgaacttaatatacctgcagagttgctgtt
ttggggactagcatggactacttctgtgggtaaccagaaaatatcagttg
caatccagatctcaaaattaatttacattgtgtgggctaacagttaatct
tcttaatatactgaaattacagtcataacaatttacaactccatttttaa
tgctgtttaaatttcctgactttcaagaatggttattgctagaaagatgt
tttggcatacgaagtaaactttcttgaatgatacacacagtttgaatgat
aactttacagttgagtttttcttacaatgtctgtttgtacaagatccagg
gaatgcattttttgtgctataattctgtacacaattgtttcttcatgctt
ccattggtctataagatcactgatgccagtggatttagttccatttgcat
agacatctacccaaaaactattctttacaagtaagagtcaatcaattaat
tttttataaactcatgtgtatacaattgttattatctctcttatattctt
gatatgatggaatatatggttctgtatgatggtcagtttactttagatat
actagcttgttttacatttgagagctttgtggaaggcatgaagattcatt
tctctattgaagaaattcttaaagaagaattttttttgtcaaatttggtg
ataaccaaacaacaatggaacaagcaattggcagcagacaagtctgtgtg
ctgacttaggtcttaggaaagtcatccttaagatgtaatataggttatta
aaaccattattataattagtaaatttcttttatattatttgaactttaaa
tatcacacaaaatttttatgtttcaaatttggtctacagtccaccccact
atttattgtcatgaattttttaggaaatacaaacaagtcaaaagggacta
ggtcattgagagcatgttcttgaatgagatattaagatgctagcctcctc
gtcttttggcttctgggctaccagcttgatcctatctgtatcccatttat
atttgcaccatcaaagacttacagcagtattggcaatcgtcaagacaacg
ttcttaaacttagcaaaataatcatagaagtgttagctcatggaaatata
atctgattaccattaactgattcttgacctgta
gaattcttacctgaggaataccgaatggcagagaagcacctgaaaaaatg
ttcaacatccttaatcatcagggaaatgcaaatcaaaacaacactgagat
tccacctcacaccagtcagaatggctaagatcaaaacctcaggtgacagc
agatgctggcgaggatgtggagaaaggggaacactcctccattgttggtg
ggattgcaagcttgtacaaccactctggaaatcagtctggcagttcctca
gaaaattggacatagtactaccggaggatcccgcaatacctctcctgggc
atatatccagaagatgtcccaactggtaagaagaacacatgctctactat
gttcattgcagccttgtttataatagccagaagctggaaagaacccagat
gcccctcaacagaggaatggatacagaaaatgtggtacatttacacaatg
gaatactactcagctattaaaaaaaatgaatttatgacattcctaggcaa
atggatggacctggagggtatcatcctgagtgaagtaacccaatcacaaa
ggaaccatgcagtttttatcacaattgctctctagtaaatctttaggtaa
ggcatggtgattccaccagaggtacttttatccttgagaagagtttttgc
tatcctaggttttttgttattccagatgaatttgcaaattgctctttcta
attcgttgaagaattgaattggaattcagagacttgacgttttatcatac
agatctttcacttccttagttagagtcacaccaagatattttatgttatt
tgtgactatttggaagggtgttgtttccctaatttctttctcagcctgtt
tattctttgtgtagagaaaggcaattgacttgtttgagttaattttatat
ccagctacttcactg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_111725881_111727077
seq2: B6Ng01-093G03.b_42_1224 (reverse)

seq1  TACAGGTTCCAAAGAATCAGTTTATTGGTAAATCAGATATTATATTTCCA  50
      |||||||    ||||||||| ||| |||| ||||||  ||||||||||||
seq2  TACAGGT---CAAGAATCAG-TTAATGGT-AATCAG--ATTATATTTCCA  43

seq1  TTGAGCTAAACAACTTCTATGATTATTTTTGCTTAGGTTTTAGAACGTTT  100
       ||||||||   ||||||||||||| |||||| || |||| |||||| ||
seq2  -TGAGCTAA--CACTTCTATGATTA-TTTTGC-TAAGTTTAAGAACG-TT  87

seq1  GTCTATGACGATTTGCCAATACTGCTGTAAGTCTGTGATGGTGCATATAT  150
      |||| |||||| |||||||||||||||||||||| |||||||||| ||||
seq2  GTCT-TGACGA-TTGCCAATACTGCTGTAAGTCTTTGATGGTGCAAATAT  135

seq1  -AATGGGATAACAGATAGGATCAAGCTGGTAGCCCAGAAGCC-AGAGACG  198
       |||||||| |||||||||||||||||||||||||||||||| | |||||
seq2  AAATGGGAT-ACAGATAGGATCAAGCTGGTAGCCCAGAAGCCAAAAGACG  184

seq1  AGGAGGCTAGCATCTTAATATCTCATTCAAGAACATGCTCTCAATGACCT  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGGCTAGCATCTTAATATCTCATTCAAGAACATGCTCTCAATGACCT  234

seq1  AGTCCCTTTTGACTTGTTTGTATTTCCTAAAAAATTCATGACAATAAATA  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCCCTTTTGACTTGTTTGTATTTCCTAAAAAATTCATGACAATAAATA  284

seq1  GTGGGGTGGACTGTAGACCAAATTTGAAACATAAAAATTTTGTGTGATAT  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGGGTGGACTGTAGACCAAATTTGAAACATAAAAATTTTGTGTGATAT  334

seq1  TTAAAGTTCAAATAATATAAAAGAAATTTACTAATTATAATAATGGTTTT  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAGTTCAAATAATATAAAAGAAATTTACTAATTATAATAATGGTTTT  384

seq1  AATAACCTATATTACATCTTAAGGATGACTTTCCTAAGACCTAAGTCAGC  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAACCTATATTACATCTTAAGGATGACTTTCCTAAGACCTAAGTCAGC  434

seq1  ACACAGACTTGTCTGCTGCCAATTGCTTGTTCCATTGTTGTTTGGTTATC  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAGACTTGTCTGCTGCCAATTGCTTGTTCCATTGTTGTTTGGTTATC  484

seq1  ACCAAATTTGACAAAAAAAATTCTTCTTTAAGAATTTCTTCAATAGAGAA  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAAATTTGACAAAAAAAATTCTTCTTTAAGAATTTCTTCAATAGAGAA  534

seq1  ATGAATCTTCATGCCTTCCACAAAGCTCTCAAATGTAAAACAAGCTAGTA  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAATCTTCATGCCTTCCACAAAGCTCTCAAATGTAAAACAAGCTAGTA  584

seq1  TATCTAAAGTAAACTGACCATCATACAGAACCATATATTCCATCATATCA  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTAAAGTAAACTGACCATCATACAGAACCATATATTCCATCATATCA  634

seq1  AGAATATAAGAGAGATAATAACAATTGTATACACATGAGTTTATAAAAAA  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATATAAGAGAGATAATAACAATTGTATACACATGAGTTTATAAAAAA  684

seq1  TTAATTGATTGACTCTTACTTGTAAAGAATAGTTTTTGGGTAGATGTCTA  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATTGATTGACTCTTACTTGTAAAGAATAGTTTTTGGGTAGATGTCTA  734

seq1  TGCAAATGGAACTAAATCCACTGGCATCAGTGATCTTATAGACCAATGGA  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAAATGGAACTAAATCCACTGGCATCAGTGATCTTATAGACCAATGGA  784

seq1  AGCATGAAGAAACAATTGTGTACAGAATTATAGCACAAAAAATGCATTCC  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATGAAGAAACAATTGTGTACAGAATTATAGCACAAAAAATGCATTCC  834

seq1  CTGGATCTTGTACAAACAGACATTGTAAGAAAAACTCAACTGTAAAGTTA  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGATCTTGTACAAACAGACATTGTAAGAAAAACTCAACTGTAAAGTTA  884

seq1  TCATTCAAACTGTGTGTATCATTCAAGAAAGTTTACTTCGTATGCCAAAA  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTCAAACTGTGTGTATCATTCAAGAAAGTTTACTTCGTATGCCAAAA  934

seq1  CATCTTTCTAGCAATAACCATTCTTGAAAGTCAGGAAATTTAAACAGCAT  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTTTCTAGCAATAACCATTCTTGAAAGTCAGGAAATTTAAACAGCAT  984

seq1  TAAAAATGGAGTTGTAAATTGTTATGACTGTAATTTCAGTATATTAAGAA  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAATGGAGTTGTAAATTGTTATGACTGTAATTTCAGTATATTAAGAA  1034

seq1  GATTAACTGTTAGCCCACACAATGTAAATTAATTTTGAGATCTGGATTGC  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTAACTGTTAGCCCACACAATGTAAATTAATTTTGAGATCTGGATTGC  1084

seq1  AACTGATATTTTCTGGTTACCCACAGAAGTAGTCCATGCTAGTCCCCAAA  1148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGATATTTTCTGGTTACCCACAGAAGTAGTCCATGCTAGTCCCCAAA  1134

seq1  ACAGCAACTCTGCAGGTATATTAAGTTCAGAGATGGCTCAAGTGAATTC  1197
      |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCAACTCTGCAGGTATATTAAGTTCAGAGATGGCTCAAGTGAATTC  1183

seq1: chr10_104053903_104054363
seq2: B6Ng01-093G03.g_67_537 (reverse)

seq1  TTTAATAGC----------TCCATTGTGTAAATGTACCACATTTTCTGTA  40
      |||||||||          |||||||||||||||||||||||||||||||
seq2  TTTAATAGCTGAGTAGTATTCCATTGTGTAAATGTACCACATTTTCTGTA  50

seq1  TCTATTCCTCTGTTGAGGGGCATCTGGGTTCTTTCCAGCTCCTGGCTATT  90
      || ||||||||||||||||||||||||||||||||||||| |||||||||
seq2  TCCATTCCTCTGTTGAGGGGCATCTGGGTTCTTTCCAGCTTCTGGCTATT  100

seq1  ATAAATAAGGCTGCTATGAATATAGTGGAGCATGTGTCCTTCTTACCGGT  140
      ||||| |||||||| ||||| ||||| |||||||||| ||||||||| ||
seq2  ATAAACAAGGCTGCAATGAACATAGTAGAGCATGTGTTCTTCTTACCAGT  150

seq1  TGGGGCATCTTCTGGATATATGCCCAGAAGAGGTATTGCTGGATCCTCCG  190
      |||| |||||||||||||||||||||| ||||||||||| ||||||||||
seq2  TGGGACATCTTCTGGATATATGCCCAGGAGAGGTATTGCGGGATCCTCCG  200

seq1  GTAGTACTATGTCCAATTTTCTGACGAACCGCCAGACGGATTTCCAGAGT  240
      |||||||||||||||||||||||| |||| ||||||| ||||||||||||
seq2  GTAGTACTATGTCCAATTTTCTGAGGAACTGCCAGACTGATTTCCAGAGT  250

seq1  GGTTGTACAAGCCTGCAATCCCACCAACAATGGAGGAGTGTTCCTCTTTC  290
      |||||||||||| ||||||||||||||||||||||||||||||| |||||
seq2  GGTTGTACAAGCTTGCAATCCCACCAACAATGGAGGAGTGTTCCCCTTTC  300

seq1  TCCACATCCTCGCCAGCATCTGCTGTCACCTGAATTTTTGATCTTAGCCA  340
      |||||||||||||||||||||||||||||||||  |||||||||||||||
seq2  TCCACATCCTCGCCAGCATCTGCTGTCACCTGAGGTTTTGATCTTAGCCA  350

seq1  TTCTGACTGGTGTGAGGTGGAATCTCAGGGTTGTTTTGATTTGCATTTCC  390
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  TTCTGACTGGTGTGAGGTGGAATCTCAGTGTTGTTTTGATTTGCATTTCC  400

seq1  CTGATGATTAAGGATGTTGAACATTTTTTCAGGTGCTTCTCTGCCATTCG  440
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATGATTAAGGATGTTGAACATTTTTTCAGGTGCTTCTCTGCCATTCG  450

seq1  GTATTCCTCAGGTGAGAATTC  461
      ||||||||||||| |||||||
seq2  GTATTCCTCAGGTAAGAATTC  471