BAC Information

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BAC

Clone NameB6Ng01-094K08
Chromosome7 (Build37)10 (Build37)
Map Location 54,897,739 - 54,898,68938,549,132 - 38,549,697
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneTph1, Saal1, Saa3, Saa4, LOC100040106, Saa1, Saa2, Hps5, Gtf2h1, EG668838, EG384622, Ldha, Ldhc, Tsg101, Uevld, C86187, LOC384623, ENSMUSG00000056509, Spty2d1, LOC100040174, Tmem86a, Ptpn5, LOC100041710, Mrgpra6, EG668725, Gm660, Mrgpra1, LOC668846, LOC100040217, LOC668727, Mrgpra2, LOC638950, Mrgprc4-ps, LOC677457, EG668729, Mrgpra3, Mrgprc1-ps
Downstream geneLOC100040314, Mrgprc3-ps, EG435977, EG619792, Mrgprc7-ps, Mrgpra18-ps, EG435978, Mrgprc2-ps, Mrgpra4, Mrgprx1, Mrgprb7-ps, Mrgprb12-ps, EG270335, Mrgprb5, Mrgprb4, Mrgprb13, Mrgprb8, Mrgprb1, Mrgprx2, Mrgprb2, Mrgprb9-ps, Mrgprb3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-094K08.bB6Ng01-094K08.g
ACCDH905810DH905811
length948922
definitionDH905810|Mus musculus domesticus DNA, BAC clone: B6Ng01-094K08, 5' end.DH905811|Mus musculus domesticus DNA, BAC clone: B6Ng01-094K08, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(54,897,739 - 54,898,689)(38,549,132 - 38,549,697)
sequence
gaattcctggatgttttgagttaggctcttttggcattttgcattttctt
tgatagttttttttcaatgtttcctatggaatcttctgcacctgagattc
tctcttctatttcttgtattctgttgttgatatttgcatttattacttct
gatttcttttcaaagttttctatctccagagttgtctctctttgtgaatt
tttcattgtttctacttgcattttctgatggagaaaaaaatggcaatatc
atctcagtcctggggtcagacacttcctagaggcaagctcttatcttgca
aggatggtgtacagagggctgagtatcagcaccaactcctggcttcagat
gtaggcaagtagaacactgtttcacctcctctgccacttattctgcctat
gtgcttctaaatggacctgccttagagagccactggggagaaaagtgtaa
tttctcttcttaaaatattttgttgtacatatggagtaacccatggcttc
agccacataaatatcagagaatggacttgttgggtattaatgagaggaga
ggcccttggtgctgtgaaatttccattttccagtgtaggggaatgctagg
gcaggtaggtaaaagtgggtgggcaagtggggaagcaccccaatagaagc
agggagaggaggtaggatatggagttttccagggaataccaggaaagtgg
ataacatttaaaatgtaaataaatagaatatcccattaaaaaaaaaagaa
aaatactttgttgtagaaagggctttgtgccaggcttaaatatcttttaa
attgcctttccaatggggacaggcaataaggatctccaaatttaaagaca
cactcactttcaggaaggtcatggtaaagcttaaaggattttctgctata
gcaaatgcagtatttagtaacctgccctctctaacccacgagtccaga
gaattcaaattttataaaaggtcaatcaagctgtggaatctatcaagata
ttgtgatttgacttgcctactttatataaagttatagtgtacagagtttg
cttatatgtataagtgtctgttccttgtttcaaatagccattaatttggt
tattacagaatatttatgtttgatctattgcataccatcattttaaatat
aattgatagtcattatcttaagacaagttaaacaattgttttcatgcatg
tttctatatcttctataaatgcatgcgtgcatgcatccatcccattttct
gtgtttaaaaaacagcccttctatgggaggaaaatatatgtgaattggat
cacacacttattcttttgagttttctcctgcttcaacacaaataattaaa
ttgtgtgctgtagatggtgttttaaaatgttgaataatcaaactttaagt
tgtatattaatagtcaatattatatctcagagcttacaattgcttaaaat
tgttcatccctcagatgctattaattctctagtttgtaattgattatgca
acttataagaaaaaaatactgtttcttcacacatcctccctttgattctg
ccttcatatggagagcactgcctcttagagtcagcacagaacactaagaa
agtgctacattggttctgaaactgagaggctgtaaccctcacttcctttt
ctaacattattttcaaaggtttttacttccccggaatcccaaaaggtccc
tggaggaaacaagcagcccaaactagaataaccaagtaatattccaaaag
ggcactatttacagcaatcagtatattgaaatgaaacccatgatgagcta
ttgagcaagcaccttacatcaacaacaatgaagcactgtttccttgtgta
gatgctttagggaaggagtctc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_54897739_54898689
seq2: B6Ng01-094K08.b_46_993

seq1  GAATTCCTGGATGTTTTGAGTTAGGCTCTTTTGGCATTTTGCATTTTCTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTGGATGTTTTGAGTTAGGCTCTTTTGGCATTTTGCATTTTCTT  50

seq1  TGATAGTTTTTTTTCAATGTTTCCTATGGAATCTTCTGCACCTGAGATTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATAGTTTTTTTTCAATGTTTCCTATGGAATCTTCTGCACCTGAGATTC  100

seq1  TCTCTTCTATTTCTTGTATTCTGTTGTTGATATTTGCATTTATTACTTCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTTCTATTTCTTGTATTCTGTTGTTGATATTTGCATTTATTACTTCT  150

seq1  GATTTCTTTTCAAAGTTTTCTATCTCCAGAGTTGTCTCTCTTTGTGAATT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTCTTTTCAAAGTTTTCTATCTCCAGAGTTGTCTCTCTTTGTGAATT  200

seq1  TTTCATTGTTTCTACTTGCATTTTCTGATGGAGAAAAAAATGGCAATATC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCATTGTTTCTACTTGCATTTTCTGATGGAGAAAAAAATGGCAATATC  250

seq1  ATCTCAGTCCTGGGGTCAGACACTTCCTAGAGGCAAGCTCTTATCTTGCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCAGTCCTGGGGTCAGACACTTCCTAGAGGCAAGCTCTTATCTTGCA  300

seq1  AGGATGGTGTACAGAGGGCTGAGTATCAGCACCAACTCCTGGCTTCAGAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATGGTGTACAGAGGGCTGAGTATCAGCACCAACTCCTGGCTTCAGAT  350

seq1  GTAGGCAAGTAGAACACTGTTTCACCTCCTCTGCCACTTATTCTGCCTAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGGCAAGTAGAACACTGTTTCACCTCCTCTGCCACTTATTCTGCCTAT  400

seq1  GTGCTTCTAAATGGACCTGCCTTAGAGAGCCACTGGGGAGAAAAGTGTAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCTTCTAAATGGACCTGCCTTAGAGAGCCACTGGGGAGAAAAGTGTAA  450

seq1  TTTCTCTTCTTAAAATATTTTGTTGTACATATGGAGTAACCCATGGCTTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTCTTCTTAAAATATTTTGTTGTACATATGGAGTAACCCATGGCTTC  500

seq1  AGCCACATAAATATCAGAGAATGGACTTGTTGGGTATTAATGAGAGGAGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCACATAAATATCAGAGAATGGACTTGTTGGGTATTAATGAGAGGAGA  550

seq1  GGCCCTTGGTGCTGTGAAATTTCCATTTTCCAGTGTAGGGGAATGCTAGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCCTTGGTGCTGTGAAATTTCCATTTTCCAGTGTAGGGGAATGCTAGG  600

seq1  GCAGGTAGGTAAAAGTGGGTGGGCAAGTGGGGAAGCACCCCAATAGAAGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGTAGGTAAAAGTGGGTGGGCAAGTGGGGAAGCACCCCAATAGAAGC  650

seq1  AGGGAGAGGAGGTAGGATATGGAGTTTTCCAGGGAATACCAGGAAAGTGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGAGAGGAGGTAGGATATGGAGTTTTCCAGGGAATACCAGGAAAGTGG  700

seq1  ATAACATTTAAAATGTAAATAAATAGAATATCCAATTAAAAAAAAAAGAA  750
      ||||||||||||||||||||||||||||||||| |||||||||||||| |
seq2  ATAACATTTAAAATGTAAATAAATAGAATATCCCATTAAAAAAAAAAG-A  749

seq1  AAAATACTTTGTTGTAGAAAGGGC-TTGTGCCAGGGCTTAAATATC-TTT  798
      |||||||||||||||||||||||| |||||||| |||||||||||| |||
seq2  AAAATACTTTGTTGTAGAAAGGGCTTTGTGCCA-GGCTTAAATATCTTTT  798

seq1  AAATTGCC-TTCCAAT-GGGACAGGCAAGAAGGATCTCCAAATTTAAAGA  846
      |||||||| ||||||| ||||||||||| |||||||||||||||||||| 
seq2  AAATTGCCTTTCCAATGGGGACAGGCAATAAGGATCTCCAAATTTAAAG-  847

seq1  ACACACTCACTTTCAGGAGGTTCATGTAAAAGCTGAAAGGATTTTCTGCT  896
      |||||||||||||||||| | |||||  |||||| |||||||||||||||
seq2  ACACACTCACTTTCAGGAAGGTCATGGTAAAGCTTAAAGGATTTTCTGCT  897

seq1  ATTAGCAAATGCAGTATTTAGTAAATCCTGTCCCTCTCTAACCCACGAGT  946
      | ||||||||||||||||||||||  |||| |||||||||||||||||||
seq2  A-TAGCAAATGCAGTATTTAGTAA--CCTG-CCCTCTCTAACCCACGAGT  943

seq1  TCAGA  951
       ||||
seq2  CCAGA  948

seq1: chr10_38549132_38549697
seq2: B6Ng01-094K08.g_69_640 (reverse)

seq1  AACAGTA-TTTTTTCTTATAAGTTGCATAAGCAATTGCAAGCTTGAGAAT  49
      ||||||| |||||||||||||||||||||| ||||| ||| || ||||||
seq2  AACAGTATTTTTTTCTTATAAGTTGCATAATCAATTACAAACTAGAGAAT  50

seq1  TAATAGCATCTGAGGGATGAAAAATTTTAAGCAATTGCAAGCTCTGAGAT  99
      ||||||||||||||||||||| ||||||||||||||| ||||||||||||
seq2  TAATAGCATCTGAGGGATGAACAATTTTAAGCAATTGTAAGCTCTGAGAT  100

seq1  ATAATATTGACTATTAATATACAACTTAAAATTTGATTGTTCAACATTTT  149
      |||||||||||||||||||||||||||||| ||||||| |||||||||||
seq2  ATAATATTGACTATTAATATACAACTTAAAGTTTGATTATTCAACATTTT  150

seq1  TAAACACCATCTACAGAACACAATTTAATTATCTGTGCTGAAACAGGAGG  199
       ||||||||||||||| ||||||||||||||| |||| |||| |||||| 
seq2  AAAACACCATCTACAGCACACAATTTAATTATTTGTGTTGAAGCAGGAGA  200

seq1  AAACTCAAAAGAATAAGTGTGTGATTCAACTTACATATACTTTTCTTCCA  249
      ||||||||||||||||||||||||| ||| | ||||||| ||| || |||
seq2  AAACTCAAAAGAATAAGTGTGTGATCCAATTCACATATATTTTCCTCCCA  250

seq1  TAGAAGGGCTGGTTTTTAAATACAGTAAATG----GGATGCATGCATGCA  295
      ||||||||||| |||||||| |||| |||||    ||||||||||| |||
seq2  TAGAAGGGCTGTTTTTTAAACACAGAAAATGGGATGGATGCATGCACGCA  300

seq1  TGAATTTATAGAAGATATAGAAGCATGCATAAAAACAAAT-TTTAACTTA  344
      || ||||||||||||||||||| ||||||| ||||||| | |||||||| 
seq2  TGCATTTATAGAAGATATAGAAACATGCATGAAAACAATTGTTTAACTTG  350

seq1  TCTTAGGATAATTAGTATCAATTTTATTTAAAATGATGGTATGCAATAGA  394
      ||||| |||||| | |||||||| ||||||||||||||||||||||||||
seq2  TCTTAAGATAATGACTATCAATTATATTTAAAATGATGGTATGCAATAGA  400

seq1  TCAAACATCAATATTCTGTAATAACCAAGTTAATGGCTGTTTGGAACAAG  444
      |||||||| ||||||||||||||||||| ||||||||| |||| ||||||
seq2  TCAAACATAAATATTCTGTAATAACCAAATTAATGGCTATTTGAAACAAG  450

seq1  GAACAGACACTTATACATATAAGCAAACTCTGTACACTATAACTTTATAT  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACAGACACTTATACATATAAGCAAACTCTGTACACTATAACTTTATAT  500

seq1  AAAGTAGGCAAGTCAAATCGCAATGTCCTGATAAATTCCACAGCCTGATT  544
      ||||||||||||||||||| |||| || ||||| |||||||||| |||||
seq2  AAAGTAGGCAAGTCAAATCACAATATCTTGATAGATTCCACAGCTTGATT  550

seq1  GACCTTTTATAAACTTTGAATT  566
      ||||||||||||| ||||||||
seq2  GACCTTTTATAAAATTTGAATT  572