BAC Information

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BAC

Clone NameB6Ng01-107K01
Chromosome10 (Build37)
Map Location 5,813,414 - 5,844,621
singlet/doubletdoublet
Overlap geneGm221
Upstream geneSyne1, Esr1, LOC100041310
Downstream gene1700052N19Rik, Rmnd1, Zbtb2, Akap12, Mthfd1l, Plekhg1, Iyd
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-107K01.bB6Ng01-107K01.g
ACCDH915040DH915041
length968316
definitionDH915040|Mus musculus domesticus DNA, BAC clone: B6Ng01-107K01, 5' end.DH915041|Mus musculus domesticus DNA, BAC clone: B6Ng01-107K01, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(5,844,086 - 5,844,621)(5,813,414 - 5,813,729)
sequence
gaattcttttttttttttccatttttattaggtatttagctcatttacat
ttccaatgctataccaaaagtcccccatacccacccacccccactcccct
acccccccactccccctttttggccctggcgttcccctgcactggggcat
ataaagtttgcgtgtccaatgggcctctctttccagtgatggccgactag
gccatcttttgatacatatgcagctagagtcaagagctctggggtactgg
ttagttcataatgttgttccacatatagggttgcagatccctttagctcc
ttgggtactttctctagctcctccattgggagccctgtgatccatccatt
agctgactgtgagcatccacttctgtgtttgctaggccccggcatagtct
cacaagagacagctacatctgggtcctttcgataaaatcttgctagtata
tgcaatggtgtcagcgtttggatgctgattatggagtggatccctggata
tggcagtctctacatggtccatcctttcatctcagctccaaactttgtct
ttgtaactccttccatgggtgttttgctgcatgaattcttataggaaggt
ttaaaattatttggctatccgcttgcatgttcctatgttccccctttctc
ctgagttcccgatggttctcaggagccattgttgccgtcaggagatgctg
tgtctgggaagcagtacatttctcccaacagaagaatcattgctggaaaa
cacaaagcaaccatgttgtaaggtggtttctttgggctgtgctaagggtt
tatttggaagagaaaactggggtttagttcacacatgttatttaggaagt
tgttttttcccttgtctggtttcccttgttcattggagactttttgtggt
tagaaaaaaaagcactcataccattttgaagtctctaggacactcataat
ttggctatcacaattatt

caggacaggcggggctacacagagaaaccctgtttcagacagacagacag
acaaacaaacgtaggctggctatgtgtggtgtcactccacagaggagacc
tgctccagtttactgactaacgttcgtctcagaaagagacaatgaaacct
gacagagccagaagaagggaggttgaaggctctgtgtggtgaggaagtca
actgaagggcacacccagtcagtgccagaactcacaactaagatcaacca
gctagttaccctggctcatgataaagtcctgctgcttagttaacgaaagg
attggggaggggggga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_5844086_5844621
seq2: B6Ng01-107K01.b_481_1013 (reverse)

seq1  AATAA-TGTGATAGCCAAAATATGAGTGTCCTAGAGAC-TCAAAATGGTA  48
      ||||| ||||||||||||| |||||||||||||||||| |||||||||||
seq2  AATAATTGTGATAGCCAAATTATGAGTGTCCTAGAGACTTCAAAATGGTA  50

seq1  ATTGAGTGCTTTTTTTTTCTAACCACAAAAAGTCTCCAATGAACAAGGGA  98
        ||||||| ||||||||||||||||||||||||||||||||||||||| 
seq2  --TGAGTGC-TTTTTTTTCTAACCACAAAAAGTCTCCAATGAACAAGGG-  96

seq1  AAACCAGACAAGGGAAAAAACAACTTCCTAAATAACATGTGTTGAACTAA  148
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  AAACCAGACAAGGGAAAAAACAACTTCCTAAATAACATGTG-TGAACTAA  145

seq1  ACCCCAGTTTTCTCTTCCAAATAAACCCTTAGCACAGCCCAAAGAAACCA  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCCAGTTTTCTCTTCCAAATAAACCCTTAGCACAGCCCAAAGAAACCA  195

seq1  CCTTACAACATGGTTGCTTTGTGTTTTCCAGCAATGATTCTTCTGTTGGG  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTACAACATGGTTGCTTTGTGTTTTCCAGCAATGATTCTTCTGTTGGG  245

seq1  AGAAATGTACTGCTTCCCAGACACAGCATCTCCTGACGGCAACAATGGCT  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAATGTACTGCTTCCCAGACACAGCATCTCCTGACGGCAACAATGGCT  295

seq1  CCTGAGAACCATCGGGAACTCAGGAGAAAGGGGGAACATAGGAACATGCA  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGAGAACCATCGGGAACTCAGGAGAAAGGGGGAACATAGGAACATGCA  345

seq1  AGCGGATAGCCAAATAATTTTAAACCTTCCTATAAGAATTCATGCAGCAA  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCGGATAGCCAAATAATTTTAAACCTTCCTATAAGAATTCATGCAGCAA  395

seq1  AACACCCATGGAAGGAGTTACAAAGACAAAGTTTGGAGCTGAGATGAAAG  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACCCATGGAAGGAGTTACAAAGACAAAGTTTGGAGCTGAGATGAAAG  445

seq1  GATGGACCATGTAGAGACTGCCATATCCAGGGATCCACTCCATAATCAGC  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGGACCATGTAGAGACTGCCATATCCAGGGATCCACTCCATAATCAGC  495

seq1  ATCCAAACGCTGACACCATTGCATATACTAGCAAGATT  536
      ||||||||||||||||||||||||||||||||||||||
seq2  ATCCAAACGCTGACACCATTGCATATACTAGCAAGATT  533


seq1: chr10_5813414_5813729
seq2: B6Ng01-107K01.g_70_385

seq1  CAGGACAGGCGGGGCTACACAGAGAAACCCTGTTTCAGACAGACAGACAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGACAGGCGGGGCTACACAGAGAAACCCTGTTTCAGACAGACAGACAG  50

seq1  ACAAACAAACGTAGGCTGGCTATGTGTGGTGTCACTCCACAGAGGAGACC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAACAAACGTAGGCTGGCTATGTGTGGTGTCACTCCACAGAGGAGACC  100

seq1  TGCTCCAGTTTACTGACTAACGTTCGTCTCAGAAAGAGACAATGAAACCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCCAGTTTACTGACTAACGTTCGTCTCAGAAAGAGACAATGAAACCT  150

seq1  GACAGAGCCAGAAGAAGGGAGGTTGAAGGCTCTGTGTGGTGAGGAAGTCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGAGCCAGAAGAAGGGAGGTTGAAGGCTCTGTGTGGTGAGGAAGTCA  200

seq1  ACTGAAGGGCACACCCAGTCAGTGCCAGAACTCACAACTAAGATCAACCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGAAGGGCACACCCAGTCAGTGCCAGAACTCACAACTAAGATCAACCA  250

seq1  GCTAGTTACCCTGGCTCATGATAAAGTCCTGCTGCTTAGTTAACGAAAGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAGTTACCCTGGCTCATGATAAAGTCCTGCTGCTTAGTTAACGAAAGG  300

seq1  ATTGGGGAGGGGGGGA  316
      ||||||||||||||||
seq2  ATTGGGGAGGGGGGGA  316


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