BAC Information

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BAC

Clone NameB6Ng01-108E17
Chromosome2 (Build37)10 (Build37)
Map Location 129,318,178 - 129,319,3404,080,049 - 4,080,099
singlet/doubletsingletsinglet
Overlap geneF830045P16Rik
Upstream geneLOC383791, LOC100043730, Gm355, Anapc1, Mertk, Tmem87b, 1600015H20Rik, Zc3h8, LOC100043735, LOC100043736, Zc3h6, LOC668894, Ttl, LOC100043738, Rpo1-2, Chchd5, LOC545461, LOC100043431, Slc20a1, A730036I17Rik, LOC671466, Ckap2l, Il1a, Il1b, OTTMUSG00000015529, LOC668896
Downstream geneSirpa, Pdyn, Ppia-ps2_1620.1, Stk35, Tgm3, AU015228, LOC100043438, Tgm6, Snrpb, Tmc2, Nol5a, Idh3b, Ebf4, LOC668899, Cpxm1, LOC100043446, 1700020A23Rik, 4933425O20Rik, A930025D01Rik, Vps16
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-108E17.bB6Ng01-108E17.g
ACCDH915517DH915518
length1,156151
definitionDH915517|Mus musculus domesticus DNA, BAC clone: B6Ng01-108E17, 5' end.DH915518|Mus musculus domesticus DNA, BAC clone: B6Ng01-108E17, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(129,318,178 - 129,319,340)(4,080,049 - 4,080,099)
sequence
gaattctttggtgtgtctcagcatgtgtgtgtgtgtgtgtgtgtgtgtat
gtgcgtgtgcatgtgcgtgtgcatgtgcgtgtgtgtacatccttctcaag
caaggttagcacatagtttgtcaggctctgttcttaaaagccctatagtt
atacataaatcaaaagatattttgactggcttagggaactcagtcattaa
tagcaaaaatagataaaagaatgttaaaaattgtatgtatgtatgtgtat
ttttatctgtttaaaaagtcttctagaaaaagcaatcaaaaactattagg
agaataaaaataaaacaaaacaaaaaacaacatgaaaatttcctaactac
cacttgtctgggaggcaacagaaattttctgccatagcggggctgtagca
gtcaggtctacagcaaatattagaacaaatgtatataatgtcaaggggta
taatagataagaaaataaaacaaataatctacttgcttcttttggtagtc
aaatcctcaagtttccactctgcacagcctggttagttcccagggtagct
ctagcatgatcctcctgtcttactggtcttccagcatcaaagcttggtca
cttcagatggtcggtttacatgatgttgacaaatcaggaacacattccca
gttgcaagaggctggcttcattctgttgtgttgagcccaggaaatcatct
ctgccacagttagtatagagggatggattccaaagcaagccagcatatcc
accatgggtcccgctgagttttcacacctaacacaaggattggagcttag
tttgaatagttagagcttaactttatggttttacatggttgacttgactt
agtaattgtgcattaagaaaaaaatgtgttcaaatgctaccactgaaaat
gtagtacactttggcaaacaatgtggaaccttaagcacatatttttgatt
ttcagaagtgttgaccctgcagaattttgactttctcttaaatgtctctt
aaatattattacatacatttataaaatgtaactaatgttttcaattttta
tttgtgattttcattcagatatattatgatattatttatggattttggaa
gtatacattttggaaggtgatcattgggataaaactataaacatggagcc
attaac
catagtggcagggctaatttatatgtgtatgtgtgtgaatgaattggtga
atgtgcactgtgtgtgtggtgtgtgaataaattggtgagtgtgcactgtg
tgtgtggtgtgtgagtgaattgatgaatgtacactgtatgtgtgtgtgta
t
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_129318178_129319340
seq2: B6Ng01-108E17.b_44_1199 (reverse)

seq1  GTTATATGGCTCCATGTTTATAAGTATTTAT-CCAATGA-CTACTTACAA  48
      |||| |||||||||||||||| ||| ||||| ||||||| |  ||| |||
seq2  GTTA-ATGGCTCCATGTTTAT-AGT-TTTATCCCAATGATCACCTTCCAA  47

seq1  AATGTATAACTTTCAAAATTCATAAATAATATCATAATATATTCTGGATG  98
      ||||||| |||| |||||| ||||||||||||||||||||| |||| |||
seq2  AATGTAT-ACTTCCAAAATCCATAAATAATATCATAATATA-TCTGAATG  95

seq1  AATATCACAAATAAAAATTGAAAACATTAGTTACATTTTATAAATGTATT  148
      || |||||||||||||||||||||||||||||||||||||||||||||| 
seq2  AAAATCACAAATAAAAATTGAAAACATTAGTTACATTTTATAAATGTAT-  144

seq1  GTTAATAAATATTTAAGAGACATTTAAGAGAAAGTCAAAATTCTGCAGGG  198
        |||| |||||||||||||||||||||||||||||||||||||||||||
seq2  -GTAAT-AATATTTAAGAGACATTTAAGAGAAAGTCAAAATTCTGCAGGG  192

seq1  TCAACACTTCTGAAAATC-AAAATATGTGCTTAAGGTTCCACATTGTTTG  247
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  TCAACACTTCTGAAAATCAAAAATATGTGCTTAAGGTTCCACATTGTTTG  242

seq1  CCAAAGTTGTACTACATTTTTCAGTGGTAGCATTTGAACACATTTTTTTC  297
      |||||| ||||||||| |||||||||||||||||||||||||||||||||
seq2  CCAAAG-TGTACTACA-TTTTCAGTGGTAGCATTTGAACACATTTTTTTC  290

seq1  TTAATGCACAATTACTAAGTCAAGTCAACCATGTAAAACCATAAAGTTAA  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATGCACAATTACTAAGTCAAGTCAACCATGTAAAACCATAAAGTTAA  340

seq1  GCTCTAACTATTCAAACTAAGCTCCAATCCTTGTGTTAGGTGTGAAAACT  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTAACTATTCAAACTAAGCTCCAATCCTTGTGTTAGGTGTGAAAACT  390

seq1  CAGCGGGACCCATGGTGGATATGCTGGCTTGCTTTGGAATCCATCCCTCT  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCGGGACCCATGGTGGATATGCTGGCTTGCTTTGGAATCCATCCCTCT  440

seq1  ATACTAACTGTGGCAGAGATGATTTCCTGGGCTCAACACAACAGAATGAA  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTAACTGTGGCAGAGATGATTTCCTGGGCTCAACACAACAGAATGAA  490

seq1  GCCAGCCTCTTGCAACTGGGAATGTGTTCCTGATTTGTCAACATCATGTA  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGCCTCTTGCAACTGGGAATGTGTTCCTGATTTGTCAACATCATGTA  540

seq1  AACCGACCATCTGAAGTGACCAAGCTTTGATGCTGGAAGACCAGTAAGAC  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCGACCATCTGAAGTGACCAAGCTTTGATGCTGGAAGACCAGTAAGAC  590

seq1  AGGAGGATCATGCTAGAGCTACCCTGGGAACTAACCAGGCTGTGCAGAGT  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGGATCATGCTAGAGCTACCCTGGGAACTAACCAGGCTGTGCAGAGT  640

seq1  GGAAACTTGAGGATTTGACTACCAAAAGAAGCAAGTAGATTATTTGTTTT  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAACTTGAGGATTTGACTACCAAAAGAAGCAAGTAGATTATTTGTTTT  690

seq1  ATTTTCTTATCTATTATACCCCTTGACATTATATACATTTGTTCTAATAT  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTCTTATCTATTATACCCCTTGACATTATATACATTTGTTCTAATAT  740

seq1  TTGCTGTAGACCTGACTGCTACAGCCCCGCTATGGCAGAAAATTTCTGTT  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTGTAGACCTGACTGCTACAGCCCCGCTATGGCAGAAAATTTCTGTT  790

seq1  GCCTCCCAGACAAGTGGTAGTTAGGAAATTTTCATGTTGTTTTTTGTTTT  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTCCCAGACAAGTGGTAGTTAGGAAATTTTCATGTTGTTTTTTGTTTT  840

seq1  GTTTTATTTTTATTCTCCTAATAGTTTTTGATTGCTTTTTCTAGAAGACT  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTATTTTTATTCTCCTAATAGTTTTTGATTGCTTTTTCTAGAAGACT  890

seq1  TTTTAAACAGATAAAAATACACATACATACATACAATTTTTAACATTCTT  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAAACAGATAAAAATACACATACATACATACAATTTTTAACATTCTT  940

seq1  TTATCTATTTTTGCTATTAATGACTGAGTTCCCTAAGCCAGTCAAAATAT  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATCTATTTTTGCTATTAATGACTGAGTTCCCTAAGCCAGTCAAAATAT  990

seq1  CTTTTGATTTATGTATAACTATAGGGCTTTTAAGAACAGAGCCTGACAAA  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTGATTTATGTATAACTATAGGGCTTTTAAGAACAGAGCCTGACAAA  1040

seq1  CTATGTGCTAACCTTGCTTGAGAAGGATGTACACACACGCACATGCACAC  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATGTGCTAACCTTGCTTGAGAAGGATGTACACACACGCACATGCACAC  1090

seq1  GCACATGCACACGCACATACACACACACACACACACACACACATGCTGAG  1147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACATGCACACGCACATACACACACACACACACACACACACATGCTGAG  1140

seq1  ACACACCAAAGAATTC  1163
      ||||||||||||||||
seq2  ACACACCAAAGAATTC  1156

seq1: chr10_4080049_4080099
seq2: B6Ng01-108E17.g_92_225 (reverse)

seq1  --------------------------------------------------  0
                                                        
seq2  ATACACACACACATACAGTGTACATTCATCAATTCACTCACACACCACAC  50

seq1  -----------------------ATACACACA-CACACACACA---CACA  23
                             || |||||| ||||||||||   ||||
seq2  ACACAGTGCACACTCACCAATTTATTCACACACCACACACACAGTGCACA  100

seq1  CACA------CACACACACACACACACATATAAA  51
        ||      ||  |||||||| |||||||||||
seq2  TTCACCAATTCATTCACACACATACACATATAAA  134