BAC Information

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BAC

Clone NameB6Ng01-108E19
Chromosome10 (Build37)
Map Location 102,807,889 - 102,863,827
singlet/doubletdoublet
Overlap geneLOC100043277, 6430590A10Rik, Slc6a15
Upstream geneMgat4c, LOC667652, Nts, Pamci, LOC382413, Cart1, Lrriq1
Downstream geneEG667697, LOC667701, EG627488, EG667692, EG667695, LOC100043292
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-108E19.bB6Ng01-108E19.g
ACCDH915521DH915522
length1,1801,079
definitionDH915521|Mus musculus domesticus DNA, BAC clone: B6Ng01-108E19, 5' end.DH915522|Mus musculus domesticus DNA, BAC clone: B6Ng01-108E19, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(102,862,611 - 102,863,827)(102,807,889 - 102,808,996)
sequence
gaattccacagaagctaatcccttctgcttccctgcttacaggcccaccc
gagctccacgttcatcctttatataacctccagtgtctcaactcttttac
ctttctcaccagagttttaacaagttaatgatgagctgataccttaattt
agtaaatcacaaaatcacatacactcccaaacctatttctgttttctgtt
cagttaaaaataacaagacatgattaagtctacaagttctttatgagtaa
ccagggtcaagatacacagtaataagattcgatctattccataggataat
ggtatgaatttcacactctctatgaagctaatgaaaattttgctgaaata
tgtgtgtgtataaaaattcccaagcgtaccattataactaagactccaga
gggggtaaaacatttctcagaaaacactactctatgagacaaactctggg
aaaagagtcagaccattccccagagcctgtggattttagattattggtaa
ctcgggagatcaatattttcatccgttcgtctagcaggaagatactgttg
ttgatgtttcaaatgatcagttagttactcgagttggacataaacccctc
agctagagggtgatgggtacacgtagatcaaagtttccccagtttatcag
tgtaaaaaaaaccataagctatttcataaggagaatgaattttcacattg
gaaataatgacaataatactcatgaaccagaaaggtaggttttaaaaatt
agaaggagatccaattgcaaatacagaaaacccacttttctggagaggtt
aatatactatattttagaaacctaatatattgatgttaaaacaattggcc
cttaagcatagctatggcgtcatttttttcaataaaataagatttacata
ccttagagtgaacatgtgtcggatgccatcaattgaaccatttaaaagag
agatcttattagaaacatataagaccacgtagggaacagagactgaaata
catgatctgcaacaagagaatggcatgggtgagacagactagtgacgttc
tatagtaaactatactcttgatagcagttgttaacacaatgtgacaactc
taagtcactttaagaagactgtttgaatcagcttctttgatttccctgga
cctaaaacttggttagcctgatcaattgtc
gaattctcaggcccaatttaaagcgtattggagtttcagggtagaccagt
tttatcttactctgtctttaggcatctgaaacattattggggtgtgaagg
ctggagcctggagttttttctattaggaattgacttagtccccttaactg
ccaatttgaagtctgtcatggaatccatctactcatctcagtttattttg
gactttccatgttccataatatttccatgaaacgtaacttgttcggatac
catcaacctaaagtaatcgagaggcccatgaagttagcagagcagatcca
tacaaaaagtaatttctaccaccatttgttgaggaccatgttttttctct
agtgtatttttgggatcatttgacgttttctatttgtatgtttttaattt
cccttgctgtcttttgtgatacttctctcttcttctattaatactatgtt
tggatctttaccttgtttctttgtggtgacttgagccaaagacctgtcaa
tttgtttatcttctcaaggaatctgctcgcatatttactgattgttttta
ttgtactatttgtatttcattaatttctactcttctgttgtttttccccc
ctttcatctactagatgagtttaatttttcttcccttatttcccaaattc
ttgagctgcaccactttatgtactttcttatgtgttaatttgggcatata
gagatgggaaaattggatgcccacatgcagaagaataatatgcacactat
tagatattgtctctctttgtgacgaaaatgtaggccagatcatatcccgg
ttggaagcagatacattttatttggcaatgctccctgctcccaggccaaa
tcctatgtcccaagaacaaagttgaggagtgacatgttcagaataagcat
gaagtttgtagaccttagcaggagatgacagtcagcagagtgggtctgta
cccaggtatgattaaagctagcctctggcagtacttggctactgccatgt
caaaggtggtttcatgggtgcagaatgtggaaatgactttgtcatgactt
cttgttcagaattccagtcaggcaggtga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_102862611_102863827
seq2: B6Ng01-108E19.b_48_1227 (reverse)

seq1  GACAATATGAATCAGGCTAAACAAAGTTTTATTTATGTCTCAAGTGAGAT  50
      |||||| || |||||||| ||| ||||||||        || || || | 
seq2  GACAAT-TG-ATCAGGCT-AACCAAGTTTTA------GGTCCAGGGA-AA  40

seq1  TTAAAGAAGGCTGAATCCAGAACAGTCTTCTTAAAAAGTGACTTTAGGAG  100
      | |||||| ||||| ||   ||||||||||||  ||||||||||   |||
seq2  TCAAAGAA-GCTGATTC--AAACAGTCTTCTT--AAAGTGACTT--AGAG  83

seq1  TTGTCACCAATTGTGTTAAACAAACTGGCTATCAAGAGTATAGTTTTAAC  150
      |||||||  ||||||||||   |||| |||||||||||||||||||  ||
seq2  TTGTCAC--ATTGTGTTAA--CAACT-GCTATCAAGAGTATAGTTT--AC  126

seq1  TATTAAGAACGGTCACTAGTCTGTCTCACCCATTGCCATTTCTCTTTGTT  200
      |||  ||||| ||||||||||||||||||||| ||||| |||||||   |
seq2  TAT--AGAAC-GTCACTAGTCTGTCTCACCCA-TGCCA-TTCTCTT--GT  169

seq1  TGCAGATCATGTATTTCAGTTCTCTGTTCCCCTACGTGGTCCTTATATGT  250
      ||||||||||||||||||| |||||||| ||||||||||| |||||||||
seq2  TGCAGATCATGTATTTCAG-TCTCTGTT-CCCTACGTGGT-CTTATATGT  216

seq1  TTCCTAATAAGATCTCTCCTTTTAAATGGTTCAATTGATGGCATCCGACA  300
      || |||||||||||||| ||||||||||||||||||||||||||||||||
seq2  TT-CTAATAAGATCTCT-CTTTTAAATGGTTCAATTGATGGCATCCGACA  264

seq1  CATGTTCACTCCTAAGGTATGTAAATCTTATTTTATTGAAAAAAATGACG  350
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  CATGTTCACT-CTAAGGTATGTAAATCTTATTTTATTGAAAAAAATGACG  313

seq1  CCATAGCTATGCTTAAGGGCCAATTGTTTTAACATCAATATATTAGGTTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATAGCTATGCTTAAGGGCCAATTGTTTTAACATCAATATATTAGGTTT  363

seq1  CTAAAATATAGTATATTAACCTCTCCAGAAAAGTGGGTTTTCTGTATTTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAAATATAGTATATTAACCTCTCCAGAAAAGTGGGTTTTCTGTATTTG  413

seq1  CAATTGGATCTCCTTCTAATTTTTAAAACCTACCTTTCTGGTTCATGAGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTGGATCTCCTTCTAATTTTTAAAACCTACCTTTCTGGTTCATGAGT  463

seq1  ATTATTGTCATTATTTCCAATGTGAAAATTCATTCTCCTTATGAAATAGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATTGTCATTATTTCCAATGTGAAAATTCATTCTCCTTATGAAATAGC  513

seq1  TTATGGTTTTTTTTACACTGATAAACTGGGGAAACTTTGATCTACGTGTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGGTTTTTTTTACACTGATAAACTGGGGAAACTTTGATCTACGTGTA  563

seq1  CCCATCACCCTCTAGCTGAGGGGTTTATGTCCAACTCGAGTAACTAACTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCATCACCCTCTAGCTGAGGGGTTTATGTCCAACTCGAGTAACTAACTG  613

seq1  ATCATTTGAAACATCAACAACAGTATCTTCCTGCTAGACGAACGGATGAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATTTGAAACATCAACAACAGTATCTTCCTGCTAGACGAACGGATGAA  663

seq1  AATATTGATCTCCCGAGTTACCAATAATCTAAAATCCACAGGCTCTGGGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATTGATCTCCCGAGTTACCAATAATCTAAAATCCACAGGCTCTGGGG  713

seq1  AATGGTCTGACTCTTTTCCCAGAGTTTGTCTCATAGAGTAGTGTTTTCTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGTCTGACTCTTTTCCCAGAGTTTGTCTCATAGAGTAGTGTTTTCTG  763

seq1  AGAAATGTTTTACCCCCTCTGGAGTCTTAGTTATAATGGTACGCTTGGGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAATGTTTTACCCCCTCTGGAGTCTTAGTTATAATGGTACGCTTGGGA  813

seq1  ATTTTTATACACACACATATTTCAGCAAAATTTTCATTAGCTTCATAGAG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTATACACACACATATTTCAGCAAAATTTTCATTAGCTTCATAGAG  863

seq1  AGTGTGAAATTCATACCATTATCCTATGGAATAGATCGAATCTTATTACT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTGAAATTCATACCATTATCCTATGGAATAGATCGAATCTTATTACT  913

seq1  GTGTATCTTGACCCTGGTTACTCATAAAGAACTTGTAGACTTAATCATGT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTATCTTGACCCTGGTTACTCATAAAGAACTTGTAGACTTAATCATGT  963

seq1  CTTGTTATTTTTAACTGAACAGAAAACAGAAATAGGTTTGGGAGTGTATG  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTTATTTTTAACTGAACAGAAAACAGAAATAGGTTTGGGAGTGTATG  1013

seq1  TGATTTTGTGATTTACTAAATTAAGGTATCAGCTCATCATTAACTTGTTA  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTTTGTGATTTACTAAATTAAGGTATCAGCTCATCATTAACTTGTTA  1063

seq1  AAACTCTGGTGAGAAAGGTAAAAGAGTTGAGACACTGGAGGTTATATAAA  1150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTCTGGTGAGAAAGGTAAAAGAGTTGAGACACTGGAGGTTATATAAA  1113

seq1  GGATGAACGTGGAGCTCGGGTGGGCCTGTAAGCAGGGAAGCAGAAGGGAT  1200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATGAACGTGGAGCTCGGGTGGGCCTGTAAGCAGGGAAGCAGAAGGGAT  1163

seq1  TAGCTTCTGTGGAATTC  1217
      |||||||||||||||||
seq2  TAGCTTCTGTGGAATTC  1180

seq1: chr10_102807889_102808996
seq2: B6Ng01-108E19.g_64_1142

seq1  GAATTCTCAGGCCCAATTTAAAGCGTATTGGAGTTTCAGGGTAGACCAGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCAGGCCCAATTTAAAGCGTATTGGAGTTTCAGGGTAGACCAGT  50

seq1  TTTATCTTACTCTGTCTTTAGGCATCTGAAACATTATTGGGGTGTGAAGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATCTTACTCTGTCTTTAGGCATCTGAAACATTATTGGGGTGTGAAGG  100

seq1  CTGGAGCCTGGAGTTTTTTCTATTAGGAATTGACTTAGTCCCCTTAACTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGAGCCTGGAGTTTTTTCTATTAGGAATTGACTTAGTCCCCTTAACTG  150

seq1  CCAATTTGAAGTCTGTCATGGAATCCATCTACTCATCTCAGTTTATTTTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAATTTGAAGTCTGTCATGGAATCCATCTACTCATCTCAGTTTATTTTG  200

seq1  GACTTTCCATGTTCCATAATATTTCCATGAAACGTAACTTGTTCGGATAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTTTCCATGTTCCATAATATTTCCATGAAACGTAACTTGTTCGGATAC  250

seq1  CATCAACCTAAAGTAATCGAGAGGCCCATGAAGTTAGCAGAGCAGATCCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCAACCTAAAGTAATCGAGAGGCCCATGAAGTTAGCAGAGCAGATCCA  300

seq1  TACAAAAAGTAATTTCTACCACCATTTGTTGAGGACCATGTTTTTTCTCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAAAAAGTAATTTCTACCACCATTTGTTGAGGACCATGTTTTTTCTCT  350

seq1  AGTGTATTTTTGGGATCATTTGACGTTTTCTATTTGTATGTTTTTAATTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTATTTTTGGGATCATTTGACGTTTTCTATTTGTATGTTTTTAATTT  400

seq1  CCCTTGCTGTCTTTTGTGATACTTCTCTCTTCTTCTATTAATACTATGTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTGCTGTCTTTTGTGATACTTCTCTCTTCTTCTATTAATACTATGTT  450

seq1  TGGATCTTTACCTTGTTTCTTTGTGGTGACTTGAGCCAAAGACCTGTCAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATCTTTACCTTGTTTCTTTGTGGTGACTTGAGCCAAAGACCTGTCAA  500

seq1  TTTGTTTATCTTCTCAAGGAATCTGCTCGCATATTTACTGATTGTTTTTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTTATCTTCTCAAGGAATCTGCTCGCATATTTACTGATTGTTTTTA  550

seq1  TTGTACTATTTGTATTTCATTAATTTCTACTCTTCTGTTGTTTTTCCCCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTACTATTTGTATTTCATTAATTTCTACTCTTCTGTTGTTTTTCCCCC  600

seq1  CTTTCATCTACTAGATGAGTTTAATTTTTCTTCCCTTATTTCCCAAATTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCATCTACTAGATGAGTTTAATTTTTCTTCCCTTATTTCCCAAATTC  650

seq1  TTGAGCTGCACCACTTTATGTACTTTCTTATGTGTTAATTTGGGCATATA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGCTGCACCACTTTATGTACTTTCTTATGTGTTAATTTGGGCATATA  700

seq1  GAGATGGGAAAATTGGATGCCCACATGCAGAAGAATAATATGCACACTAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATGGGAAAATTGGATGCCCACATGCAGAAGAATAATATGCACACTAT  750

seq1  TAGATATTGTCTCTCTTTGTGACGAAAATGTAGGCCAGATCATAT-CCGG  799
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  TAGATATTGTCTCTCTTTGTGACGAAAATGTAGGCCAGATCATATCCCGG  800

seq1  TTGGAAGCAGATACATTTTATTTGGCAATGCTCCCTGCTCCCAGGCCAAA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGAAGCAGATACATTTTATTTGGCAATGCTCCCTGCTCCCAGGCCAAA  850

seq1  TCCTATGTCCCAAAGAACAAAGTTGAGGAAGTGACATGTTCAGAATAAGG  899
      ||||||||||| |||||||||||||||| ||||||||||||||||||| |
seq2  TCCTATGTCCC-AAGAACAAAGTTGAGG-AGTGACATGTTCAGAATAA-G  897

seq1  CATGAAAGTTTTGTAGACCTTAGGCAAGGGAGGATGACAAGTCAGCCAGG  949
      ||||||   ||||||||||||| |||  ||| |||||| |||||||   |
seq2  CATGAA--GTTTGTAGACCTTA-GCA--GGA-GATGAC-AGTCAGC--AG  938

seq1  AGTGGGTCTGTACCCAGGTATGATTAAAAGCTAAGCCTCTGGGCAAGTAC  999
      ||||||||||||||||||||||||| |||||| |||||||||   |||||
seq2  AGTGGGTCTGTACCCAGGTATGATT-AAAGCT-AGCCTCTGG--CAGTAC  984

seq1  TTGGGCCTACTGGCCATGTCAAAAGGTGGTTTCATTGGGTGCCAGAAATG  1049
      ||||  ||||| |||||||| ||||||||||||| |||||| ||| ||||
seq2  TTGG--CTACT-GCCATGTC-AAAGGTGGTTTCA-TGGGTG-CAG-AATG  1027

seq1  TGGAAAATGACTTTTGTCATGACTTCTTTGTTCAGAATATTCCCAGTGCA  1099
      ||| ||||||| |||||||||||||| ||||||||||   | ||||| ||
seq2  TGG-AAATGAC-TTTGTCATGACTTC-TTGTTCAGAA---TTCCAGT-CA  1070

seq1  GGCAGGTGA  1108
      |||||||||
seq2  GGCAGGTGA  1079