BAC Information

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BAC

Clone NameB6Ng01-109H22
Chromosome10 (Build37)
Map Location 29,140,220 - 29,141,303
singlet/doubletsinglet
Overlap genenone
Upstream genePtprk, E430004N04Rik, 4930519F09Rik, 2310057J18Rik, LOC432447, 6330407J23Rik, Echdc1, Rnf146
Downstream geneRspo3, EG630389, Rpl12, LOC623064, LOC674389, Gm232, LOC667696, LOC100040542, 2610036L11Rik, LOC212815
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-109H22.bB6Ng01-109H22.g
ACCDH916387DH916388
length1,2211,069
definitionDH916387|Mus musculus domesticus DNA, BAC clone: B6Ng01-109H22, 5' end.DH916388|Mus musculus domesticus DNA, BAC clone: B6Ng01-109H22, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcaaggcccatacataaaattaataaaagcaatatcttctacaaat
ggtgctggctcaaatgttggttagcatgtagaagaatgtgaatctactta
tcattcttatctacttgtacaaagctgaagtctaagtgtatcaaagaact
ccacataaaaccagagctactaaacttatagaagagaatgtgggaaagtg
cctcaaagatatgggtccaggggggaaatttctgaacagaactgcaatgg
cttgtgctgtaagatcaagaatccacaaatgggacctcgtaaaatcgcaa
aactctaaggcaaaagatgctgtcaataacaccaaaaggcaaccaacaga
ttgggaaaatatctttaccaatcctaactatgatagagggctaatataca
gcatatataaagaactgaagaagttggactccagaaaaacaagtaaccca
ttaaaaaatggggtacagagctaaacaaagagttcttaactgaggaatac
cgaatggatgagaagcacctaaaaaaatgttcaacatcataaatcatcag
ggaaatacaagtcaaaacaactctgagattccacctcacaccagtcagaa
tggctaagatcaaaaagtcaggtgacagcagatactggtgaggatgtgga
gaaagaggaacactcttccactggtggtgggattgcaagctggtacaacc
actctggaaatcagtctggcagatcctcagaaaattggacattgttctac
tggaagacacagcaatatcactcctgggcatatacccagaatatgttcca
acataaaataaggatacatgttccactatattcatagcagccttatttgt
aatagccagaagctggaaatgaacccacatatccctcaacagagtaatag
atgcagaaaatgtggtacattacaaattgatactatgcagctataaaaac
agtgaatttatgaaattcttagacaatggatggatctggagatatcatcc
tagtgaggtaacccaatcacagaaaaacacacatgatatgcactcactga
taggtcaatataagcccagagctcagatctttcttaaggggaacaaatat
ccatggagagtacgagaacaagtcgagcaagactgagacacattcagaga
ctttccattgatctcaaatacctactgaacatagcgaagtccacaccaag
agcctcgctctgtcaacgaga
gaattcatgaatgcaatggattttaaggctaacaacatttgtttgtggat
accggcatgaatgcttagaaggcagtttgatgtcatgtccacatagctta
acagtagtagcaatcctcttcttaaatctttctgctgttcttcctgcttt
aatgtcacctatgttctgttgacccttgttacttaaggtatatatctcca
tcccaaataccaaataccttcaaaaaataacaagagtctgaagagtcatt
ttgagcaatggaaacactcactgactgtataatcatgagatatccaaata
ccaagagatccagattttgggtttgatacatatgccactgtagagggaag
tagatgcactgtgaatgcaggactctgagatagggcttagcatttacttt
ttttcttcaagcttatcctttctcctgagtgaataaaagtggttagtgga
cataaatgcttttaaaaagtaatctgatccatgaagaaagatataatgca
gagcaagcaatcttacttccaattgtaaaacaaaataagggcaaaggcag
atggatcagaatgttctggatcctctgatactccttatgcttcaaagagt
tttacagctctgactatatccataatgcatgacacaagcagaaattgctt
aaggcttgcaaaaaatgcaatacaaacaccagagtggatttatttttgaa
aaatctattttttagttttgctttataatcctctttatcctcttctttct
cctttttctaaaccttttttatttgtctttagggtgtttattgtttgatt
gttttgttttctaatgttggaattttttcttaagaacaattgtggcctgt
ttcctttccttttctttgtcttcatcttttttattagatatttcttcatt
tacatttcaaatgctatccctaaagttcctatacctccccccacctgctc
ccaacccacccactcctgcttctagtctggcattccctgtactggggcat
ataatttcaaagaacaagactctcctcctcattgatggcgaataggcatc
ctctggctacattgcaact
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_29140220_29141303
seq2: B6Ng01-109H22.g_66_1134 (reverse)

seq1  AGTTGCATATGTAG-CAGAGGATGGCCTAGTCGGCCATCAATGA-GAGGA  48
      ||||||| |||||| |||||||| ||||| || ||||||||||| |||||
seq2  AGTTGCA-ATGTAGCCAGAGGAT-GCCTATTC-GCCATCAATGAGGAGGA  47

seq1  GAGGCCCTTGTTCTTGTGAAAATTATATGCCCCAGTACAGGGGAATGCCA  98
      |||   ||||||||| || |||||||||||||||||||| ||||||||||
seq2  GAG--TCTTGTTCTT-TG-AAATTATATGCCCCAGTACA-GGGAATGCCA  92

seq1  GGACTAGGAAGCAGGAGTGGGTGGGTTGGGGAGCAGGGTGGGGGGAGGGT  148
       ||||| |||||||||||||||||||| ||||||| |||||||||| |||
seq2  -GACTA-GAAGCAGGAGTGGGTGGGTT-GGGAGCA-GGTGGGGGGA-GGT  137

seq1  ATAGGGAACTTTAGGGATAGCATTTGAAATGTAAATGAAGAAAATATCTA  198
      ||| |||||||||||||||||||||||||||||||||||| |||||||||
seq2  ATA-GGAACTTTAGGGATAGCATTTGAAATGTAAATGAAG-AAATATCTA  185

seq1  ATAAAAAAGATGAAAGACAAAAGAAAAGGAAAGGAAACAGGCCACAATTG  248
      |||||||||||| ||||| |||||||||||||||||||||||||||||||
seq2  ATAAAAAAGATG-AAGAC-AAAGAAAAGGAAAGGAAACAGGCCACAATTG  233

seq1  TTCTTAAGAAAAAATTCCAACATTAGAAAACAAAACAATCAAACAATAAA  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTAAGAAAAAATTCCAACATTAGAAAACAAAACAATCAAACAATAAA  283

seq1  CACCCTAAAGACAAATAAAAAAGGTTTAGAAAAAGGAGAAAGAAGAGGAT  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCCTAAAGACAAATAAAAAAGGTTTAGAAAAAGGAGAAAGAAGAGGAT  333

seq1  AAAGAGGATTATAAAGCAAAACTAAAAAATAGATTTTTCAAAAATAAATC  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAGGATTATAAAGCAAAACTAAAAAATAGATTTTTCAAAAATAAATC  383

seq1  CACTCTGGTGTTTGTATTGCATTTTTTGCAAGCCTTAAGCAATTTCTGCT  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTCTGGTGTTTGTATTGCATTTTTTGCAAGCCTTAAGCAATTTCTGCT  433

seq1  TGTGTCATGCATTATGGATATAGTCAGAGCTGTAAAACTCTTTGAAGCAT  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTCATGCATTATGGATATAGTCAGAGCTGTAAAACTCTTTGAAGCAT  483

seq1  AAGGAGTATCAGAGGATCCAGAACATTCTGATCCATCTGCCTTTGCCCTT  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAGTATCAGAGGATCCAGAACATTCTGATCCATCTGCCTTTGCCCTT  533

seq1  ATTTTGTTTTACAATTGGAAGTAAGATTGCTTGCTCTGCATTATATCTTT  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTGTTTTACAATTGGAAGTAAGATTGCTTGCTCTGCATTATATCTTT  583

seq1  CTTCATGGATCAGATTACTTTTTAAAAGCATTTATGTCCACTAACCACTT  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCATGGATCAGATTACTTTTTAAAAGCATTTATGTCCACTAACCACTT  633

seq1  TTATTCACTCAGGAGAAAGGATAAGCTTGAAGAAAAAAAGTAAATGCTAA  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTCACTCAGGAGAAAGGATAAGCTTGAAGAAAAAAAGTAAATGCTAA  683

seq1  GCCCTATCTCAGAGTCCTGCATTCACAGTGCATCTACTTCCCTCTACAGT  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCTATCTCAGAGTCCTGCATTCACAGTGCATCTACTTCCCTCTACAGT  733

seq1  GGCATATGTATCAAACCCAAAATCTGGATCTCTTGGTATTTGGATATCTC  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCATATGTATCAAACCCAAAATCTGGATCTCTTGGTATTTGGATATCTC  783

seq1  ATGATTATACAGTCAGTGAGTGTTTCCATTGCTCAAAATGACTCTTCAGA  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATTATACAGTCAGTGAGTGTTTCCATTGCTCAAAATGACTCTTCAGA  833

seq1  CTCTTGTTATTTTTTGAAGGTATTTGGTATTTGGGATGGAGATATATACC  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTGTTATTTTTTGAAGGTATTTGGTATTTGGGATGGAGATATATACC  883

seq1  TTAAGTAACAAGGGTCAACAGAACATAGGTGACATTAAAGCAGGAAGAAC  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGTAACAAGGGTCAACAGAACATAGGTGACATTAAAGCAGGAAGAAC  933

seq1  AGCAGAAAGATTTAAGAAGAGGATTGCTACTACTGTTAAGCTATGTGGAC  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGAAAGATTTAAGAAGAGGATTGCTACTACTGTTAAGCTATGTGGAC  983

seq1  ATGACATCAAACTGCCTTCTAAGCATTCATGCCGGTATCCACAAACAAAT  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGACATCAAACTGCCTTCTAAGCATTCATGCCGGTATCCACAAACAAAT  1033

seq1  GTTGTTAGCCTTAAAATCCATTGCATTCATGAATTC  1084
      ||||||||||||||||||||||||||||||||||||
seq2  GTTGTTAGCCTTAAAATCCATTGCATTCATGAATTC  1069