BAC Information

Click to search

BAC

Clone NameB6Ng01-110L22
Chromosome10 (Build37)
Map Location 127,902,392 - 128,063,339
singlet/doubletdoublet
Overlap geneSmarcc2, Myl6, Myl6b, Mbc2, Zc3h10, Rpl41, LOC668453, Pa2g4, Erbb3, LOC100043114, LOC668459, Rps26
Upstream geneR3hdm2, Stac3, Ndufa4l2, Shmt2, Nxph4, Lrp1, LOC100043054, Stat6, Nab2, BC030440, Myo1a, Tac2, Zbtb39, Admr, Rdh1, Rdh9, Rdh16, AY053573, Rdhs, BC089597, Rdh7, Sdro, LOC382468, Hsd17b6, LOC100043618, Prim1, LOC100043077, Naca, Ptges3, Atp5b, Baz2a, LOC100043085, Rbms2, LOC100043624, Gls2, Spryd4, Mip, Timeless, Apon, Apof, Stat2, Il23a, Usp52, Tmem4, Cs, Coq10a, Ankrd52, Slc39a5, Obfc2b, Rnf41
Downstream geneIkzf4, Suox, EG622589, Rab5b, Cdk2, Si, Dgka, LOC100043669, Wibg, LOC622655, Mmp19, 1110012D08Rik, Dnajc14, Ormdl2, 1110005A23Rik, Gdf11, Cd63, Rdh5, Bloc1s1, Itga7, Mettl7b, Olfr9, Olfr763, EG622733, EG546487, Olfr765, Olfr768, Olfr769, Olfr770, Olfr771, Olfr772, Olfr773-ps1, LOC624925, Olfr774, Olfr1518, Olfr776, Olfr777, Olfr778-ps1, LOC544749, Olfr780, Olfr781, Olfr782, Olfr783-ps1, Olfr784, EG546488, Olfr786, Olfr787, Olfr788, Olfr789-ps1, Olfr790, Olfr791, Olfr792, GA_x5J8B7W6HFP-3168293-3169194, Olfr794, GA_x5J8B7W6HFP-3198834-3199739, Olfr796, GA_x5J8B7W6HFP-3231749-3230798, Olfr798
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-110L22.bB6Ng01-110L22.g
ACCDH917280DH917281
length8261,069
definitionDH917280|Mus musculus domesticus DNA, BAC clone: B6Ng01-110L22, 5' end.DH917281|Mus musculus domesticus DNA, BAC clone: B6Ng01-110L22, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(128,062,515 - 128,063,339)(127,902,392 - 127,903,456)
sequence
gaattctcgccccctttccaatagcgtctctttccattctcagaccaaaa
aaagaagaaacaacggtcgcgccaaaaagggccgcggccatgtgcagccc
attcgctgcacgaactgcgcccggtgcgtgcccaaggataaggccatcaa
gaagtttgtcattcggaacattgtagaagccgctgctgtcagggacatat
ctgaagcaagcgtcttcgacggtaagtgagccacagccgtgatttgtaca
gggacgaagagtgaggagggtgtgtatggctcgttgtcttcagcttgggg
agaaggtgccttttgtggcacagtaagcaggcctaatgatggggttttaa
cttggtttttctcttggggtggagattgaggctcatgcatggtagccaaa
cccctgcatcccatccctgtgagagactgcctatttaggagaatctgaaa
aagcataattctttagttattgaaaaaaattgaacagcttttaaaacggg
caaagactggtttgggcagtttgtgacttggtttttggcgtctcagaact
cactgtgtagacctactcaagagatcttccctagtgctgggattaaaggc
gtgcaccacagcacctggctggcttttgtctgtttgttcattgttttgtt
tttttcttgacctaacagtagtaaccatgaggcctgccagcagagtgaga
ctccctaacttgagctattctcatattgtgtggcccactttggctttgag
gatgccttgggccttttgagtggcaacctctagcccaagagttgaactct
tggtgtatgttgggtgtggtgttgtt
gaattcctgttactgagtctcctgcacatcagcagaatgcttagttagag
cctgtgtccagtcatttttcccttcagcatatctctctcttctatcctca
gaggaatgggtacggccagtcatgaagagggataaacaggttcttctgca
ctggggctactatcctgacaggtgaggacgggttctcaagagcagacaca
ggtccgtgtggcagagcaaggaggcctgagtcaattgtttatttacttat
ttgggtttttttgggatacagaatcttgccatgtaatccaggctggtaaa
gaacttgctatctagattgtgctggcctcagacgtgaagcagtccttgta
cctgaacctcctgagagctgggattaaaggcgtgagccacccactggctt
tgtgtgtgtgtgtttgttcgcttttgtctttttagctttaatttttagtt
tatgtgtacggttgttttgcgtgcttgtatgtctgtacgcctgaaactag
agatatagattgttatgaaccatgtgggtgctggaaaccaaacctgggcc
ctgtacaagagcagtaattgctttaaatactgagccatctctctagccaa
tgcttcttggtgttttgtttgtttgtctgtttgttgtgagaccaaatctt
agagccaaagtcatctagaacatctccctttacctcctcagtgcttggat
tgcttaggagagccaccatgcccagcgcccagttcccagtgtttgctctt
tgttagtttttcaagatagggtttttctatgtaacagccctggctgtcct
ggaactcacagagatccatgtgccttctgttctccaagatctgggataaa
agatgtgtaccaccgtcaagacaggatctcactatggtaatttcagccac
ctggaattcacatgtagaccagactggcttcaaactcagagatctgccac
cttctgcctcctgagtgctgggatttaagggcataggccaccacaccacc
tggctcttattgttcttttaaattggtgtcttttgtgtggcatgggcgag
acatgccacgggacaagag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_128062515_128063339
seq2: B6Ng01-110L22.b_48_873 (reverse)

seq1  ACCAACACCACACCCAACATACACCAAGAGTTCAACTCTTGGGCTAGAGG  50
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAACACCACACCCAACATACACCAAGAGTTCAACTCTTGGGCTAGAGG  50

seq1  TTGCCACTCAAAAGG-CCAAGGCATCCTCAAAGCCAAAGTGGGCCACACA  99
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  TTGCCACTCAAAAGGCCCAAGGCATCCTCAAAGCCAAAGTGGGCCACACA  100

seq1  ATATGAGAATAGCTCAAGTTAGGGAGTCTCACTCTGCTGGCAGGCCTCAT  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGAGAATAGCTCAAGTTAGGGAGTCTCACTCTGCTGGCAGGCCTCAT  150

seq1  GGTTACTACTGTTAGGTCAAGAAAAAAACAAAACAATGAACAAACAGACA  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTACTACTGTTAGGTCAAGAAAAAAACAAAACAATGAACAAACAGACA  200

seq1  AAAGCCAGCCAGGTGCTGTGGTGCACGCCTTTAATCCCAGCACTAGGGAA  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCCAGCCAGGTGCTGTGGTGCACGCCTTTAATCCCAGCACTAGGGAA  250

seq1  GATCTCTTGAGTAGGTCTACACAGTGAGTTCTGAGACGCCAAAAACCAAG  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCTCTTGAGTAGGTCTACACAGTGAGTTCTGAGACGCCAAAAACCAAG  300

seq1  TCACAAACTGCCCAAACCAGTCTTTGCCCGTTTTAAAAGCTGTTCAATTT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACAAACTGCCCAAACCAGTCTTTGCCCGTTTTAAAAGCTGTTCAATTT  350

seq1  TTTTCAATAACTAAAGAATTATGCTTTTTCAGATTCTCCTAAATAGGCAG  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCAATAACTAAAGAATTATGCTTTTTCAGATTCTCCTAAATAGGCAG  400

seq1  TCTCTCACAGGGATGGGATGCAGGGGTTTGGCTACCATGCATGAGCCTCA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTCACAGGGATGGGATGCAGGGGTTTGGCTACCATGCATGAGCCTCA  450

seq1  ATCTCCACCCCAAGAGAAAAACCAAGTTAAAACCCCATCATTAGGCCTGC  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCCACCCCAAGAGAAAAACCAAGTTAAAACCCCATCATTAGGCCTGC  500

seq1  TTACTGTGCCACAAAAGGCACCTTCTCCCCAAGCTGAAGACAACGAGCCA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTGTGCCACAAAAGGCACCTTCTCCCCAAGCTGAAGACAACGAGCCA  550

seq1  TACACACCCTCCTCACTCTTCGTCCCTGTACAAATCACGGCTGTGGCTCA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACACACCCTCCTCACTCTTCGTCCCTGTACAAATCACGGCTGTGGCTCA  600

seq1  CTTACCGTCGAAGACGCTTGCTTCAGATATGTCCCTGACAGCAGCGGCTT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTACCGTCGAAGACGCTTGCTTCAGATATGTCCCTGACAGCAGCGGCTT  650

seq1  CTACAATGTTCCGAATGACAAACTTCTTGATGGCCTTATCCTTGGGCACG  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACAATGTTCCGAATGACAAACTTCTTGATGGCCTTATCCTTGGGCACG  700

seq1  CACCGGGCGCAGTTCGTGCAGCGAATGGGCTGCACATGGCCGCGGCCCTT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCGGGCGCAGTTCGTGCAGCGAATGGGCTGCACATGGCCGCGGCCCTT  750

seq1  TTTGGCGCGACCGTTGTTTCTTCTTTTTTTGGTCTGAGAATGGAAAGAGA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGCGCGACCGTTGTTTCTTCTTTTTTTGGTCTGAGAATGGAAAGAGA  800

seq1  CGCTATTGGAAAGGGGGCGAGAATTC  825
      ||||||||||||||||||||||||||
seq2  CGCTATTGGAAAGGGGGCGAGAATTC  826

seq1: chr10_127902392_127903456
seq2: B6Ng01-110L22.g_67_1135

seq1  GAATTCCTGTTACTGAGTCTCCTGCACATCAGCAGAATGCTTAGTTAGAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTGTTACTGAGTCTCCTGCACATCAGCAGAATGCTTAGTTAGAG  50

seq1  CCTGTGTCCAGTCATTTTTCCCTTCAGCATATCTCTCTCTTCTATCCTCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTGTCCAGTCATTTTTCCCTTCAGCATATCTCTCTCTTCTATCCTCA  100

seq1  GAGGAATGGGTACGGCCAGTCATGAAGAGGGATAAACAGGTTCTTCTGCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGAATGGGTACGGCCAGTCATGAAGAGGGATAAACAGGTTCTTCTGCA  150

seq1  CTGGGGCTACTATCCTGACAGGTGAGGACGGGTTCTCAAGAGCAGACACA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGGCTACTATCCTGACAGGTGAGGACGGGTTCTCAAGAGCAGACACA  200

seq1  GGTCCGTGTGGCAGAGCAAGGAGGCCTGAGTCAATTGTTTATTTACTTAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCCGTGTGGCAGAGCAAGGAGGCCTGAGTCAATTGTTTATTTACTTAT  250

seq1  TTGGGTTTTTTTGGGATACAGAATCTTGCCATGTAATCCAGGCTGGTAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGTTTTTTTGGGATACAGAATCTTGCCATGTAATCCAGGCTGGTAAA  300

seq1  GAACTTGCTATCTAGATTGTGCTGGCCTCAGACGTGAAGCAGTCCTTGTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTTGCTATCTAGATTGTGCTGGCCTCAGACGTGAAGCAGTCCTTGTA  350

seq1  CCTGAACCTCCTGAGAGCTGGGATTAAAGGCGTGAGCCACCCACTGGCTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGAACCTCCTGAGAGCTGGGATTAAAGGCGTGAGCCACCCACTGGCTT  400

seq1  TGTGTGTGTGTGTTTGTTCGCTTTTGTCTTTTTAGCTTTAATTTTTAGTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGTGTGTGTTTGTTCGCTTTTGTCTTTTTAGCTTTAATTTTTAGTT  450

seq1  TATGTGTACGGTTGTTTTGCGTGCTTGTATGTCTGTACGCCTGAAACTAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTGTACGGTTGTTTTGCGTGCTTGTATGTCTGTACGCCTGAAACTAG  500

seq1  AGATATAGATTGTTATGAACCATGTGGGTGCTGGAAACCAAACCTGGGCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATATAGATTGTTATGAACCATGTGGGTGCTGGAAACCAAACCTGGGCC  550

seq1  CTGTACAAGAGCAGTAATTGCTTTAAATACTGAGCCATCTCTCTAGCCAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTACAAGAGCAGTAATTGCTTTAAATACTGAGCCATCTCTCTAGCCAA  600

seq1  TGCTTCTTGGTGTTTTGTTTGTTTGTCTGTTTGTTGTGAGACCAAATCTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTCTTGGTGTTTTGTTTGTTTGTCTGTTTGTTGTGAGACCAAATCTT  650

seq1  AGAGCCAAAGTCATCTAGAACATCTCCCTTTACCTCCTCAGTGCTTGGAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCCAAAGTCATCTAGAACATCTCCCTTTACCTCCTCAGTGCTTGGAT  700

seq1  TGCTTAGGAGAGCCACCATGCCCAGCGCCCAGTTCCCAGTGTTTGCTCTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTAGGAGAGCCACCATGCCCAGCGCCCAGTTCCCAGTGTTTGCTCTT  750

seq1  TGTTAGTTTTTCAAGATAGGGTTTTTCTATGTAACAGCCCTGGCTGTCCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTAGTTTTTCAAGATAGGGTTTTTCTATGTAACAGCCCTGGCTGTCCT  800

seq1  GGAACTCACAGAGATCCATGTGCC-TCTGTTCTCCAAGATCT-GGAT-AA  847
      |||||||||||||||||||||||| ||||||||||||||||| |||| ||
seq2  GGAACTCACAGAGATCCATGTGCCTTCTGTTCTCCAAGATCTGGGATAAA  850

seq1  AGATGTGTACCACCGTCAAGACAGGATCTCACTAT-GTAATTTCAGCCAA  896
      ||||||||||||||||||||||||||||||||||| |||||||||||| |
seq2  AGATGTGTACCACCGTCAAGACAGGATCTCACTATGGTAATTTCAGCC-A  899

seq1  CCTGGAATTCACCATGTAGACCAGACTGGCTTCAAACTCAGAGATCTGCC  946
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  CCTGGAATTCA-CATGTAGACCAGACTGGCTTCAAACTCAGAGATCTGCC  948

seq1  CACCTCTGCCTCCTGAGTGCTGGGA-TTAAAGGCATAGGCCACCACCACC  995
        | ||||||||||||||||||||| |||| |||||||||||||| ||||
seq2  ACCTTCTGCCTCCTGAGTGCTGGGATTTAAGGGCATAGGCCACCA-CACC  997

seq1  ACCTGGCTCTAATTG-TCTTTTAAATGTGTGTCTTTTTGTGT-GCATGGG  1043
      |||||||||| |||| ||||||||||  ||||| |||||||| |||||||
seq2  ACCTGGCTCTTATTGTTCTTTTAAATTGGTGTC-TTTTGTGTGGCATGGG  1046

seq1  CGAG-CATGCACAGGGACAAGAG  1065
      |||| |||||   ||||||||||
seq2  CGAGACATGCCACGGGACAAGAG  1069