BAC Information

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BAC

Clone NameB6Ng01-110O16
Chromosome10 (Build37)
Map Location 57,203,985 - 57,362,096
singlet/doubletdoublet
Overlap geneHsf2, Serinc1, LOC211619, LOC668374, Pkib
Upstream geneEG668347, LOC100042622, LOC668355, LOC100042628, EG629739, LOC629742, LOC668363
Downstream genePpia-ps10_506.1, Fabp7, Smpdl3a, EG664783, 4933403O03Rik, EG245263, Gcc2, Lims1, Ranbp2, 6230424H07Rik, LOC100038981, Edar, LOC624335, LOC100039099
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-110O16.bB6Ng01-110O16.g
ACCDH917403DH917404
length1,0961,041
definitionDH917403|Mus musculus domesticus DNA, BAC clone: B6Ng01-110O16, 5' end.DH917404|Mus musculus domesticus DNA, BAC clone: B6Ng01-110O16, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(57,360,985 - 57,362,096)(57,203,985 - 57,205,040)
sequence
gaattctctgaagttcttcaacactttctatttctttaagagatggatag
ttaggctgactgtcttccatcacttgccatgagcagacagaattctaagc
acccaaacaaagaagatgagtctcactcattcctgctgacatctatcact
aataaacacacagaaatgcctgcatccaagaggatgtggttaagtgggcg
tttgtttgtttaaggttagttagcctttcacctaaaaaaacaaaacaaaa
caaaacaaaaacaaaaataccagacttagtaaattccaaagtgcattaaa
actttcaataaacattcttaagtgttctttatttttattttatatgtcta
gatgttttgtcaacatgtatgtttgtgttcaatgtgcatgactggtgacc
acaggaaccagaagatgacagtagagtctctgaaacccaggttacagatg
gttataagctgccatatgggcactaggattcaaactcaggtcctctggaa
gagcagtgagtgcttttaaccacagcgccacctctccagcactaaataaa
tgtttatgatcactcttaagcatgagcatgaaaatgcaacctaaagacat
ggaacgtggactctttttacaataatatatgtagttttctgtaatgattt
tatgatgaaaactgaactcaattttgtcatagtagtataattatgttgag
aaaaaaatctgaaatcccaaaaaataaggtatttgtctgttagcacgtga
ctaattacaagtggaggtggctacagagcaagctttttcatttgtagctt
agtgatttttgagttattctctctacaatctttgtctgtattttctcaag
tgttagtcacagatatatagttatataaaggagaagattttctttcacac
ttattatttcttttcaaattattatttggattcagactatatacaataaa
gtcattatgatataaagagatatacttgacagatttatttctacaagcta
ctactctacccaaaaaacaagatcgcaatatcagatatttaaatataata
tgatgattgtatgtgatgatgaagaattataaatatgataataatg
gaattcattagttgttcagtccttgaagctgaatgtcttagctgttcttc
agtttattttggactccaaggtatgaagttgccagcaaaagcaagagcaa
gcagggaaaacagcaagtgcttccttcttccatattctattcaggctgcc
agcaaaagttttggcccagatttaaggtggatcttcctgctgcaaaagat
ctggatttagggtgcatctttccacctaagattattcaatcaagaaaccc
ccctcattggtgtacccagccacttgggtttttattaaattccagatgta
gtcaacctgacaaacaagaagagtcgtcataaattctgtgtggaattctg
cttgtccctgcaggctaagcacatgacagagctaacagcatgccagaatt
aatagagacgtgaaagaatatgaattcttcttacctgcagtacagctacc
aagtgtgacaaagacatgaacagagattgacaatgagtggacaggacgat
ggtcatgggatcacaaaagatctgtgccattataacagggcaggacttat
tctagaaacatgggacaccattgggtagtttccagtctggaagtggctgt
ttagatttgtaagcatgcagtgacggaccagaagaggaaacgctttccta
gggctttatctgctgtaactacagcaggattttcactgccattttctctg
tgaggctctgggactgaaaatattcccaaactgaggtaaagcaacccatc
atcgcattggaatgtgcttggaaacttctagctaacccactctgggaatc
tggctacagagttggttctgattagctttgtgtaactggttgaatagaat
ttgtaccaaccctgaatcagaccctttgaagcttcctctttgggttgctg
tgaggattaaataggatagacatgcaaagccctgtcacatagactcatca
atatagtctttttttaaatcacagtacccatcatattcccatcatatatc
aacagtgctgtatgactggttcagttaatggctactgaaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_57360985_57362096
seq2: B6Ng01-110O16.b_51_1146 (reverse)

seq1  CATTATTA-------TATA--TCTTCATCATCACATACATATCATCATTA  41
      ||||||||       ||||  |||||||||||||||||| ||||||| ||
seq2  CATTATTATCATATTTATAATTCTTCATCATCACATACA-ATCATCA-TA  48

seq1  TTATGTATTTTAATATCTTGATATTTGCTGTATTCTTTGTATTTTTGGGT  91
      |||  ||||| |||||| ||||| ||||  | || |     |||||||||
seq2  TTA--TATTTAAATATC-TGATA-TTGCGATCTTGT-----TTTTTGGGT  89

seq1  A-AGAAGTAAGTAAGCTTTGTAGAAATAAATCTTGTTCAAGTATAATCCT  140
      | || |||     ||| ||||||||||||||||   |||||||||   ||
seq2  AGAGTAGT-----AGC-TTGTAGAAATAAATCT--GTCAAGTATA--TCT  129

seq1  CTTTAATTATCATTAATGAACTTTATTGTATATAGTCTGAATCCAAATAA  190
      |||||  ||||| ||||| |||||||||||||||||||||||||||||||
seq2  CTTTA--TATCA-TAATG-ACTTTATTGTATATAGTCTGAATCCAAATAA  175

seq1  TAATTTGAAAAGAAATAATAAGTGTGAAAGAAAATCTTTCTCCTTTATAT  240
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  TAATTTGAAAAGAAATAATAAGTGTGAAAGAAAATC-TTCTCCTTTATAT  224

seq1  AACTATATATCTGTGACTAACACTTGAGAAAATACAGACAAAGATTGTAG  290
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTATATATCTGTGACTAACACTTGAGAAAATACAGACAAAGATTGTAG  274

seq1  AGAGAATAACTCAAAAATCACTAAGCTACAAATGAAAAAGCTTGCTCTGT  340
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAATAACTCAAAAATCACTAAGCTACAAATGAAAAAGCTTGCTCTGT  324

seq1  AGCCACCTCCACTTGTAATTAGTCACGTGCTAACAGACAAATACCTTATT  390
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCACCTCCACTTGTAATTAGTCACGTGCTAACAGACAAATACCTTATT  374

seq1  TTTTGGGATTTCAGATTTTTTTCTCAACATAATTATACTACTATGACAAA  440
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGGGATTTCAGATTTTTTTCTCAACATAATTATACTACTATGACAAA  424

seq1  ATTGAGTTCAGTTTTCATCATAAAATCATTACAGAAAACTACATATATTA  490
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGAGTTCAGTTTTCATCATAAAATCATTACAGAAAACTACATATATTA  474

seq1  TTGTAAAAAGAGTCCACGTTCCATGTCTTTAGGTTGCATTTTCATGCTCA  540
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTAAAAAGAGTCCACGTTCCATGTCTTTAGGTTGCATTTTCATGCTCA  524

seq1  TGCTTAAGAGTGATCATAAACATTTATTTAGTGCTGGAGAGGTGGCGCTG  590
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTAAGAGTGATCATAAACATTTATTTAGTGCTGGAGAGGTGGCGCTG  574

seq1  TGGTTAAAAGCACTCACTGCTCTTCCAGAGGACCTGAGTTTGAATCCTAG  640
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTAAAAGCACTCACTGCTCTTCCAGAGGACCTGAGTTTGAATCCTAG  624

seq1  TGCCCATATGGCAGCTTATAACCATCTGTAACCTGGGTTTCAGAGACTCT  690
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCCATATGGCAGCTTATAACCATCTGTAACCTGGGTTTCAGAGACTCT  674

seq1  ACTGTCATCTTCTGGTTCCTGTGGTCACCAGTCATGCACATTGAACACAA  740
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTCATCTTCTGGTTCCTGTGGTCACCAGTCATGCACATTGAACACAA  724

seq1  ACATACATGTTGACAAAACATCTAGACATATAAAATAAAAATAAAGAACA  790
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATACATGTTGACAAAACATCTAGACATATAAAATAAAAATAAAGAACA  774

seq1  CTTAAGAATGTTTATTGAAAGTTTTAATGCACTTTGGAATTTACTAAGTC  840
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAAGAATGTTTATTGAAAGTTTTAATGCACTTTGGAATTTACTAAGTC  824

seq1  TGGTATTTTTGTTTTTGTTTTGTTTTGTTTTGTTTTTTTAGGTGAAAGGC  890
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTATTTTTGTTTTTGTTTTGTTTTGTTTTGTTTTTTTAGGTGAAAGGC  874

seq1  TAACTAACCTTAAACAAACAAACGCCCACTTAACCACATCCTCTTGGATG  940
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTAACCTTAAACAAACAAACGCCCACTTAACCACATCCTCTTGGATG  924

seq1  CAGGCATTTCTGTGTGTTTATTAGTGATAGATGTCAGCAGGAATGAGTGA  990
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCATTTCTGTGTGTTTATTAGTGATAGATGTCAGCAGGAATGAGTGA  974

seq1  GACTCATCTTCTTTGTTTGGGTGCTTAGAATTCTGTCTGCTCATGGCAAG  1040
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTCATCTTCTTTGTTTGGGTGCTTAGAATTCTGTCTGCTCATGGCAAG  1024

seq1  TGATGGAAGACAGTCAGCCTAACTATCCATCTCTTAAAGAAATAGAAAGT  1090
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGGAAGACAGTCAGCCTAACTATCCATCTCTTAAAGAAATAGAAAGT  1074

seq1  GTTGAAGAACTTCAGAGAATTC  1112
      ||||||||||||||||||||||
seq2  GTTGAAGAACTTCAGAGAATTC  1096

seq1: chr10_57203985_57205040
seq2: B6Ng01-110O16.g_70_1110

seq1  GAATTCATTAGTTGTTCAGTCCTTGAAGCTGAATGTCTTAGCTGTTCTTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTAGTTGTTCAGTCCTTGAAGCTGAATGTCTTAGCTGTTCTTC  50

seq1  AGTTTATTTTGGACTCCAAGGTATGAAGTTGCCAGCAAAAGCAAGAGCAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTATTTTGGACTCCAAGGTATGAAGTTGCCAGCAAAAGCAAGAGCAA  100

seq1  GCAGGGAAAACAGCAAGTGCTTCCTTCTTCCATATTCTATTCAGGCTGCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGGAAAACAGCAAGTGCTTCCTTCTTCCATATTCTATTCAGGCTGCC  150

seq1  AGCAAAAGTTTTGGCCCAGATTTAAGGTGGATCTTCCTGCTGCAAAAGAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAAAAGTTTTGGCCCAGATTTAAGGTGGATCTTCCTGCTGCAAAAGAT  200

seq1  CTGGATTTAGGGTGCATCTTTCCACCTAAGATTATTCAATCAAGAAACCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGATTTAGGGTGCATCTTTCCACCTAAGATTATTCAATCAAGAAACCC  250

seq1  CCCTCATTGGTGTACCCAGCCACTTGGGTTTTTATTAAATTCCAGATGTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCATTGGTGTACCCAGCCACTTGGGTTTTTATTAAATTCCAGATGTA  300

seq1  GTCAACCTGACAAACAAGAAGAGTCGTCATAAATTCTGTGTGGAATTCTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAACCTGACAAACAAGAAGAGTCGTCATAAATTCTGTGTGGAATTCTG  350

seq1  CTTGTCCCTGCAGGCTAAGCACATGACAGAGCTAACAGCATGCCAGAATT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTCCCTGCAGGCTAAGCACATGACAGAGCTAACAGCATGCCAGAATT  400

seq1  AATAGAGACGTGAAAGAATATGAATTCTTCTTACCTGCAGTACAGCTACC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGAGACGTGAAAGAATATGAATTCTTCTTACCTGCAGTACAGCTACC  450

seq1  AAGTGTGACAAAGACATGAACAGAGATTGACAATGAGTGGACAGGACGAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGTGACAAAGACATGAACAGAGATTGACAATGAGTGGACAGGACGAT  500

seq1  GGTCATGGGATCACAAAAGATCTGTGCCATTATAACAGGGCAGGACTTAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCATGGGATCACAAAAGATCTGTGCCATTATAACAGGGCAGGACTTAT  550

seq1  TCTAGAAACATGGGACACCATTGGGTAGTTTCCAGTCTGGAAGTGGCTGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAGAAACATGGGACACCATTGGGTAGTTTCCAGTCTGGAAGTGGCTGT  600

seq1  TTAGATTTGTAAGCATGCAGTGACGGACCAGAAGAGGAAACGCTTTCCTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGATTTGTAAGCATGCAGTGACGGACCAGAAGAGGAAACGCTTTCCTA  650

seq1  GGGCTTTATCTGCTGTAACTACAGCAGGATTTTCACTGCCATTTTCTCTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCTTTATCTGCTGTAACTACAGCAGGATTTTCACTGCCATTTTCTCTG  700

seq1  TGAGGCTCTGGGACTGAAAATATTCCCAAACTGAGGTAAAGCAACCCATC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGCTCTGGGACTGAAAATATTCCCAAACTGAGGTAAAGCAACCCATC  750

seq1  ATCGCATTGGAATGTGCTTGGAAACTTCTAGCTAACCCACTCTGGGAATC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCGCATTGGAATGTGCTTGGAAACTTCTAGCTAACCCACTCTGGGAATC  800

seq1  TGGCTACAGAGTTGGTTCTGATTAGCTTTGTGTAACTGGTTGAATAGAAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTACAGAGTTGGTTCTGATTAGCTTTGTGTAACTGGTTGAATAGAAT  850

seq1  TTGTACCAA-CCTGAATCAGACCCTTTGAAGCTTCCTCTTTGGGTTGCTG  899
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  TTGTACCAACCCTGAATCAGACCCTTTGAAGCTTCCTCTTTGGGTTGCTG  900

seq1  TGAGGATTAAATAGGATAAGACATGCAAAGCCCTTGTCACATAAGACCTC  949
      ||||||||||||||||| ||||||||||||||| |||||||| ||| |||
seq2  TGAGGATTAAATAGGAT-AGACATGCAAAGCCC-TGTCACAT-AGA-CTC  946

seq1  ATCAAATATTAGTCTTTTTTTTTAAAATCACAGTTACCCCATCATATATC  999
      ||| |||| ||||||||||||   ||||||||||   ||||||  |||| 
seq2  ATC-AATA-TAGTCTTTTTTT---AAATCACAGT--ACCCATC--ATATT  987

seq1  CCCATCATATATCCAAACAGTGCTGTATGACTGTGTTCAGTATATGCTTA  1049
      |||||||||||||  |||||||||||||||||| |||||||  |||  ||
seq2  CCCATCATATATC--AACAGTGCTGTATGACTG-GTTCAGTTAATGGCTA  1034

seq1  CTGAAAA  1056
      |||||||
seq2  CTGAAAA  1041