BAC Information

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BAC

Clone NameB6Ng01-111H11
Chromosome10 (Build37)
Map Location 27,833,967 - 27,973,651
singlet/doubletdoublet
Overlap genePtprk
Upstream geneLama2, LOC100040385, LOC100040961, LOC100040401
Downstream geneE430004N04Rik, 4930519F09Rik, 2310057J18Rik, LOC432447, 6330407J23Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-111H11.bB6Ng01-111H11.g
ACCDH917804DH917805
length7611,103
definitionDH917804|Mus musculus domesticus DNA, BAC clone: B6Ng01-111H11, 5' end.DH917805|Mus musculus domesticus DNA, BAC clone: B6Ng01-111H11, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(27,972,891 - 27,973,651)(27,833,967 - 27,835,100)
sequence
gaattcaacctgcagctaaactgttatatataacaaaattaggcatttgc
tcactactgtgacctctctgattagtcatatcggaaatatgattagagag
attaaattatagaacaatagtaactccagttttttttttatttttaacct
gtaccagataaattctatgaaaactagactctcattaagcaaaaatccct
ctaatcaagtttaaaaaatatttcttggtttggcctatccctccctctct
ccctctctgcctctctacctcccttcctccctctctccctccctccctcc
ctccctcccaccctccaccagatataacagaaactacttttgtccagatc
tcagcccctagcaggcagggaaggggatgactactaaaaacttgaggaac
ataaccaaatacaagcaaaaatgtgggaaacaataacaattgtttataga
atcagcaaaaagaaaaacttgaaaactttaaaatgacctgtatcgcaatc
tgaagaattgctccaattgtaaaagttacaattaacttctacagaacctc
cattttacgtagcaagaacatggcctactggtaatttttttcaagcttgc
acattctattatgccttaagataatgtttctcttctaataaagttttccc
actccatcatttctaaaggcagaatgagacatatagaaaaaagcaacttg
tactccaatctccaacacagaagatcagaaattacattttttcagatttt
gagatctgaca
gaattcccagaataagctactcagagtagaacaacctgtgtcttattgat
tgaacagtagcgaggaattccctatttccttgcagcccacattctgttcc
tgtggatactctgacagcaaagacatggccactgattgaccagctgaggg
gtccatgggtggctttcaaagaggcactcctttttgtttcttaccgtgtt
gcaatacatacatgtacatatatacatacatagctagtggaccatattgt
ttctgttgagcctgtgtacccctgtttctctgtggagcccttgctgtcct
gcaacttactctgtagaccacgctgtcttgtaacagggtttaaaagcatg
taccaccactggcagctttctatttgtcttttgatacacattttatttaa
gcaggcctgtgctttatttttttcatgaagttttctttctttcaatgatc
tgacaaataagaatatcacacaagtagctactccaacatttgtcccctcc
caaattctacacattctgaagcaatggaacttctcctaaggttttatact
ttctgattagatttatttatttatccacctcgaagaaagaaaacaattat
ggcgagttgaaagcaggggagagaaagtagttttatattctctgctgact
catgtgtctgtttacgtcgactctgtctgaagctcaaagaagataaagac
ctgaatgttctttcccttgcagagcttcatctttatgggacatgcatatt
agaatgagtatggaggacagcttaggagaaaggagaccaagagaggggtc
atgttaggtgtggaggaagaatagaaatcagacaaaagcacactcgtgtg
tttctttcttttccttttggtttttctttttcttttctctccttccttcc
tccttccttctccttcctcctcctttttcctttttttcttttgaaacaag
gttttctctgtctagtctggctgtctgactcactctgagaccaggtggct
tcaactcagaaatctgctgctcttcctcccaaatgctggatttaagcatg
gccaccactgcctggccttctttccttttctggtcagggtctaacatgtt
agt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_27972891_27973651
seq2: B6Ng01-111H11.b_44_804 (reverse)

seq1  TGTCAGATCTCAAATTCTTGAAAAATGTAATTTCTGTTCTTTTGTGTTGG  50
      |||||||||||||| |||  |||||||||||||||| |||| ||||||||
seq2  TGTCAGATCTCAAAATCTGAAAAAATGTAATTTCTGATCTTCTGTGTTGG  50

seq1  AGATTGGAGTACAAGTTGCTTTTTCTTATATGTCTCATTCTGCCTTTAGA  100
      ||||||||||||||||||||||||  ||||||||||||||||||||||||
seq2  AGATTGGAGTACAAGTTGCTTTTTTCTATATGTCTCATTCTGCCTTTAGA  100

seq1  AATGATGGAGTGGGAAAACTTTATTAGAAGAGAAACATTATCTTAAGGCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGATGGAGTGGGAAAACTTTATTAGAAGAGAAACATTATCTTAAGGCA  150

seq1  TAATAGAATGTGCAAGCTTGAAAAAAATTACCAGTAGGCCATGTTCTTGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATAGAATGTGCAAGCTTGAAAAAAATTACCAGTAGGCCATGTTCTTGC  200

seq1  TACGTAAAATGGAGGTTCTGTAGAAGTTAATTGTAACTTTTACAATTGGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACGTAAAATGGAGGTTCTGTAGAAGTTAATTGTAACTTTTACAATTGGA  250

seq1  GCAATTCTTCAGATTGCGATACAGGTCATTTTAAAGTTTTCAAGTTTTTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAATTCTTCAGATTGCGATACAGGTCATTTTAAAGTTTTCAAGTTTTTC  300

seq1  TTTTTGCTGATTCTATAAACAATTGTTATTGTTTCCCACATTTTTGCTTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTGCTGATTCTATAAACAATTGTTATTGTTTCCCACATTTTTGCTTG  350

seq1  TATTTGGTTATGTTCCTCAAGTTTTTAGTAGTCATCCCCTTCCCTGCCTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTGGTTATGTTCCTCAAGTTTTTAGTAGTCATCCCCTTCCCTGCCTG  400

seq1  CTAGGGGCTGAGATCTGGACAAAAGTAGTTTCTGTTATATCTGGTGGAGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGGGGCTGAGATCTGGACAAAAGTAGTTTCTGTTATATCTGGTGGAGG  450

seq1  GTGGGAGGGAGGGAGGGAGGGAGGGAGAGAGGGAGGAAGGGAGGTAGAGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGGAGGGAGGGAGGGAGGGAGGGAGAGAGGGAGGAAGGGAGGTAGAGA  500

seq1  GGCAGAGAGGGAGAGAGGGAGGGATAGGCCAAACCAAGAAATATTTTTTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGAGAGGGAGAGAGGGAGGGATAGGCCAAACCAAGAAATATTTTTTA  550

seq1  AACTTGATTAGAGGGATTTTTGCTTAATGAGAGTCTAGTTTTCATAGAAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTGATTAGAGGGATTTTTGCTTAATGAGAGTCTAGTTTTCATAGAAT  600

seq1  TTATCTGGTACAGGTTAAAAATAAAAAAAAAACTGGAGTTACTATTGTTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATCTGGTACAGGTTAAAAATAAAAAAAAAACTGGAGTTACTATTGTTC  650

seq1  TATAATTTAATCTCTCTAATCATATTTCCGATATGACTAATCAGAGAGGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAATTTAATCTCTCTAATCATATTTCCGATATGACTAATCAGAGAGGT  700

seq1  CACAGTAGTGAGCAAATGCCTAATTTTGTTATATATAACAGTTTAGCTGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGTAGTGAGCAAATGCCTAATTTTGTTATATATAACAGTTTAGCTGC  750

seq1  AGGTTGAATTC  761
      |||||||||||
seq2  AGGTTGAATTC  761

seq1: chr10_27833967_27835100
seq2: B6Ng01-111H11.g_68_1170

seq1  GAATTCCCAGAATAAGCTACTCAGAGTAGAACAACCTGTGTCTTATTGAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCAGAATAAGCTACTCAGAGTAGAACAACCTGTGTCTTATTGAT  50

seq1  TGAACAGTAGCGAGGAATTCCCTATTTCCTTGCAGCCCACATTCTGTTCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAACAGTAGCGAGGAATTCCCTATTTCCTTGCAGCCCACATTCTGTTCC  100

seq1  TGTGGATACTCTGACAGCAAAGACATGGCCACTGATTGACCAGCTGAGGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGATACTCTGACAGCAAAGACATGGCCACTGATTGACCAGCTGAGGG  150

seq1  GTCCATGGGTGGCTTTCAAAGAGGCACTCCTTTTTGTTTCTTACCGTGTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCATGGGTGGCTTTCAAAGAGGCACTCCTTTTTGTTTCTTACCGTGTT  200

seq1  GCAATACATACATGTACATATATACATACATAGCTAGTGGACCATATTGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAATACATACATGTACATATATACATACATAGCTAGTGGACCATATTGT  250

seq1  TTCTGTTGAGCCTGTGTACCCCTGTTTCTCTGTGGAGCCCTTGCTGTCCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGTTGAGCCTGTGTACCCCTGTTTCTCTGTGGAGCCCTTGCTGTCCT  300

seq1  GCAACTTACTCTGTAGACCACGCTGTCTTGTAACAGGGTTTAAAAGCATG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAACTTACTCTGTAGACCACGCTGTCTTGTAACAGGGTTTAAAAGCATG  350

seq1  TACCACCACTGGCAGCTTTCTATTTGTCTTTTGATACACATTTTATTTAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCACCACTGGCAGCTTTCTATTTGTCTTTTGATACACATTTTATTTAA  400

seq1  GCAGGCCTGTGCTTTATTTTTTTCATGAAGTTTTCTTTCTTTCAATGATC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGCCTGTGCTTTATTTTTTTCATGAAGTTTTCTTTCTTTCAATGATC  450

seq1  TGACAAATAAGAATATCACACAAGTAGCTACTCCAACATTTGTCCCCTCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACAAATAAGAATATCACACAAGTAGCTACTCCAACATTTGTCCCCTCC  500

seq1  CAAATTCTACACATTCTGAAGCAATGGAACTTCTCCTAAGGTTTTATACT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATTCTACACATTCTGAAGCAATGGAACTTCTCCTAAGGTTTTATACT  550

seq1  TTCTGATTAGATTTATTTATTTATCCACCTCGAAGAAAGAAAACAATTAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGATTAGATTTATTTATTTATCCACCTCGAAGAAAGAAAACAATTAT  600

seq1  GGCGAGTTGAAAGCAGGGGAGAGAAAGTAGTTTTATATTCTCTGCTGACT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCGAGTTGAAAGCAGGGGAGAGAAAGTAGTTTTATATTCTCTGCTGACT  650

seq1  CATGTGTCTGTTTACGTCGACTCTGTCTGAAGCTCAAAGAAGATAAAGAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTGTCTGTTTACGTCGACTCTGTCTGAAGCTCAAAGAAGATAAAGAC  700

seq1  CTGAATGTTCTTTCCCTTGCAGAGCTTCATCTTTATGGGACATGCATATT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAATGTTCTTTCCCTTGCAGAGCTTCATCTTTATGGGACATGCATATT  750

seq1  AGAATGAGTATGGAGGACAGCTTAGGAAGAAAGGAGACCAAGAGAGGGGT  800
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  AGAATGAGTATGGAGGACAGCTTAGG-AGAAAGGAGACCAAGAGAGGGGT  799

seq1  CATGTTAGGTGTGGAGGAAGAATAGAAATCAGACAAAAGCACACTCGTTG  850
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  CATGTTAGGTGTGGAGGAAGAATAGAAATCAGACAAAAGCACACTCG-TG  848

seq1  TGTTTCTTTTCTTTTTCCTTTTTGTTTTTTCTTTTTCTTTT-TCTCCTTC  899
      |||||| ||||||||  | ||||| |||||||||||||||| ||||||||
seq2  TGTTTC-TTTCTTTT--CCTTTTGGTTTTTCTTTTTCTTTTCTCTCCTTC  895

seq1  CTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTTTTTCCTTTTT  949
      |||||     ||||||||||  ||||||| ||||  | ||||||||||||
seq2  CTTCC-----TCCTTCCTTC--TCCTTCC-TCCT--CCTTTTTCCTTTTT  935

seq1  TTTCTTTTTGAAAC-AGGTTTTCTCTGTCTAGTCCTGGCTGTCCTGGAAC  998
      ||   ||||||||| |||||||||||||||||| |||||||| |||  ||
seq2  TT--CTTTTGAAACAAGGTTTTCTCTGTCTAGT-CTGGCTGT-CTG--AC  979

seq1  TCACTCTGTAGACCAGGTTGGCCTCAAACTCAGAAATCTGCCTGCCTCTC  1048
      |||||||| |||||||| |||| || |||||||||||||| ||| |||| 
seq2  TCACTCTG-AGACCAGG-TGGCTTC-AACTCAGAAATCTG-CTG-CTCTT  1024

seq1  CCTCCCAAATGCTGGGATTTAAGGCATGGGCCACCACTGCCTGGCTTCTT  1098
      ||||||||||||| |||||||| |||| |||||||||||||||||  |||
seq2  CCTCCCAAATGCT-GGATTTAA-GCAT-GGCCACCACTGCCTGGC--CTT  1069

seq1  TTTCCTTTTTCTTGTGTCAGGGTCTCACCTGTTAGT  1134
       || | ||||||   |||||||||| || |||||||
seq2  CTTTCCTTTTCT--GGTCAGGGTCTAACATGTTAGT  1103