BAC Information

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BAC

Clone NameB6Ng01-113H24
Chromosome9 (Build37)10 (Build37)
Map Location 35,056,506 - 35,057,277104,432,870 - 104,433,428
singlet/doubletsingletsinglet
Overlap geneC030004A17Rik
Upstream geneKirrel3, St3gal4, Dcps, Tirap, Foxred1, Srpr
Downstream geneRpusd4, EG434394, Cdon, Ddx25, Pus3, EG627480, LOC100042442, Svs7, Gm846, D730048I06Rik, 9230110F15Rik, LOC100041605, 9230113P08Rik, EG546123, LOC100041618
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-113H24.bB6Ng01-113H24.g
ACCDH919278DH919279
length778956
definitionDH919278|Mus musculus domesticus DNA, BAC clone: B6Ng01-113H24, 5' end.DH919279|Mus musculus domesticus DNA, BAC clone: B6Ng01-113H24, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(35,056,506 - 35,057,277)(104,432,870 - 104,433,428)
sequence
gaattcaaggccaacctgggtctgcatgagaacctctataaaaatttcaa
aacagacagcatttacattttgaaacctgtcatcttcaggaaacagttgg
aggggcaaggtaactttctaagaaaaatcctgggaaaaggggatgcggtg
taaagagaggggagagaaagggagtagttatctggatgatagataggctg
tcacttaatggagctgggttctgaaaccaccagaatcccaggagccctag
ctttcgcatcctggaggcagggaaaaggcaactctggctcttctctgcac
tcagcattcaggggagtctcctaactgctccctcatcctcacgggttcca
gcacacactcagcactcgacccaggcaagctgcatgctacaaagaactta
gaataacaccatgtgagaggtaggcagatggactaaggctagtagtagga
aagtccaacatgtgttggtttttggccaggaaacaaaggatttacaaata
actagtgtaaaagatctgcacatttcttgcagcaagcatctctatttttt
gtttatgaaaaattatacagaacactttttcttctgcagcaacaaacaaa
ccccccaaaaaccagaaaagtgttctctctctctctctctctctctctct
ctctctctcaaggaaaaatggcagtcatcccatgtctttgagaaaaaccc
aagcccctcaaatcatggctttttggaccaatttccaacacatctgtgtt
agcagctgtggtggggtgggggaggggt
gaattcactggtcttgccatgttccccatcatcctgaagcagctggtctg
atagaaagatggaatggccttttgaagacgcagttacagcgccaattagg
tggtaacagcttggaaggctggggcagagttcatcagaaggcagtatatg
ttttgaatcagcgctcgatatatggtacagtttcacccatagccaggatt
catgggtccaggaatcaaggggtggaaaagggaatagctccacttactat
cactcctagtgaccctctaggaaaatttttgcttcctgtccccataactc
taggatctgctggcttagaagttttggctccagagaggggagtgctccta
ccaggagctacaacaaacattccactgaactggaagctcagacttccccc
tggtcattttgggcttcgaatgcccttaaaccaacaggctaaaaaaggaa
taacagtgttaggaggggtgatagatccagattaccatggggaaattggg
ttacctcttcacaatggtggtaagcaagattatgtctggagtgtaggaga
tcccttagggtgtctcttagtactaccatgtcctgtgattaaagtcaatg
ggaaactacaacagcctaatccaagcaggatgacaaaggacgcagaccca
tcaggaatgaaggtatgggtcaatcctccaggaaaagagccaagacctgc
tgaggtactggctgaaggagaaggaaaatacagaatagtagtagaggaag
gtagtttataaataccaataaggccacgtaaccagttgcagaaacgagga
ttataaagtaatatgaatgcccatttgtaaatttactaattgcgtttgcg
attgtacgaggggatagttatatcatgttaggcgtattcacaaccttgtt
attgtttcatgtgaacatgagatatatttgtgtccagttgacaggggtgg
aatgta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_35056506_35057277
seq2: B6Ng01-113H24.b_48_824

seq1  GAATTCAAGGCCAACCTGGGTCTGCATGAGAACCTCTATAAAAATTTCAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAGGCCAACCTGGGTCTGCATGAGAACCTCTATAAAAATTTCAA  50

seq1  AACAGACAGCATTTACATTTTGAAACCTGTCATCTTCAGGAAACAGTTGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGACAGCATTTACATTTTGAAACCTGTCATCTTCAGGAAACAGTTGG  100

seq1  AGGGGCAAGGTAACTTTCTAAGAAAAATCCTGGGAAAAGGGGATGCGGTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGGCAAGGTAACTTTCTAAGAAAAATCCTGGGAAAAGGGGATGCGGTG  150

seq1  TAAAGAGAGGGGAGAGAAAGGGAGTAGTTATCTGGATGATAGATAGGCTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGAGAGGGGAGAGAAAGGGAGTAGTTATCTGGATGATAGATAGGCTG  200

seq1  TCACTTAATGGAGCTGGGTTCTGAAACCACCAGAATCCCAGGAGCCCTAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTTAATGGAGCTGGGTTCTGAAACCACCAGAATCCCAGGAGCCCTAG  250

seq1  CTTTCGCATCCTGGAGGCAGGGAAAAGGCAACTCTGGCTCTTCTCTGCAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCGCATCCTGGAGGCAGGGAAAAGGCAACTCTGGCTCTTCTCTGCAC  300

seq1  TCAGCATTCAGGGGAGTCTCCTAACTGCTCCCTCATCCTCACGGGTTCCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCATTCAGGGGAGTCTCCTAACTGCTCCCTCATCCTCACGGGTTCCA  350

seq1  GCACACACTCAGCACTCGACCCAGGCAAGCTGCATGCTACAAAGAACTTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACACACTCAGCACTCGACCCAGGCAAGCTGCATGCTACAAAGAACTTA  400

seq1  GAATAACACCATGTGAGAGGTAGGCAGATGGACTAAGGCTAGTAGTAGGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATAACACCATGTGAGAGGTAGGCAGATGGACTAAGGCTAGTAGTAGGA  450

seq1  AAGTCCAACATGTGTTGGTTTTTGGCCAGGAAACAAAGGATTTACAAATA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTCCAACATGTGTTGGTTTTTGGCCAGGAAACAAAGGATTTACAAATA  500

seq1  ACTAGTGTAAAAGATCTGCACATTTCTTGCAGCAAGCATCTCTATTTTTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAGTGTAAAAGATCTGCACATTTCTTGCAGCAAGCATCTCTATTTTTT  550

seq1  GTTTATGAAAAATTATACAGAACACTTTTTCTTCTGCAGCAACAAACAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTATGAAAAATTATACAGAACACTTTTTCTTCTGCAGCAACAAACAAA  600

seq1  CCCCCCAAAAACCAGAAAAGTGTTCTCTCTCTCTCTCTCTCTCTCTCTCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCCCAAAAACCAGAAAAGTGTTCTCTCTCTCTCTCTCTCTCTCTCTCT  650

seq1  CTCTCTCTCAAGG-AAAATGGCAGTCATCCCATGTC-TTGAGAAAAACCC  698
      ||||||||||||| |||||||||||||||||||||| |||||||||||||
seq2  CTCTCTCTCAAGGAAAAATGGCAGTCATCCCATGTCTTTGAGAAAAACCC  700

seq1  AAGCCCCTCAAATCATGGC-TTTTGGACCAA-TTCCAACACATCTGTGTT  746
      ||||||||||||||||||| ||||||||||| ||||||||||||||||||
seq2  AAGCCCCTCAAATCATGGCTTTTTGGACCAATTTCCAACACATCTGTGTT  750

seq1  AGCAGCTGTGGT-GGGTGGGGGAGGGG  772
      |||||||||||| ||||||||||||||
seq2  AGCAGCTGTGGTGGGGTGGGGGAGGGG  777

seq1: chr10_104432870_104433428
seq2: B6Ng01-113H24.g_463_1022 (reverse)

seq1  TACAATCCACCCCTTGTCAACTTGACACAAATAATATCTCATGTTCACAT  50
      |||| |||||||| |||||||| ||||||||| |||||||||||||||||
seq2  TACATTCCACCCC-TGTCAACTGGACACAAAT-ATATCTCATGTTCACAT  48

seq1  GAAACAATAACAAGGTTGTAAATACGCCTAACATGATATAACTAT-CCCT  99
      ||||||||||||||||||| ||||||||||||||||||||||||| ||||
seq2  GAAACAATAACAAGGTTGTGAATACGCCTAACATGATATAACTATCCCCT  98

seq1  CGTACAATCGCAAACGC-ATTAGTAAATTTAC-AATGGGCATTCATATTA  147
      ||||||||||||||||| |||||||||||||| |||||||||||||||||
seq2  CGTACAATCGCAAACGCAATTAGTAAATTTACAAATGGGCATTCATATTA  148

seq1  CTTTATAATCCTCGTTTCTGCAACTGGTTACGTGGCCTTAATTGGTATTT  197
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  CTTTATAATCCTCGTTTCTGCAACTGGTTACGTGGCCTT-ATTGGTATTT  197

seq1  AT-AACTACCTTCCTCTACTACCCATTCTGTA-TTTCCTTCACCTTCAGC  245
      || |||||||||||||||||| | |||||||| |||||||| ||||||||
seq2  ATAAACTACCTTCCTCTACTA-CTATTCTGTATTTTCCTTCTCCTTCAGC  246

seq1  CAGCACCTCAGCAGGTCTTGGCTCTTTTCCTGGAGGATTGACCCATACCT  295
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTACCTCAGCAGGTCTTGGCTCTTTTCCTGGAGGATTGACCCATACCT  296

seq1  TCATTCCTGATGGGTCTGCGTCCTTTGTCATCCTGCTTGGATTAGGCTGT  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTCCTGATGGGTCTGCGTCCTTTGTCATCCTGCTTGGATTAGGCTGT  346

seq1  TGTAGTTTCCCATTGACTTTAATCACAGGACATGGTAGTACTAAGAGACG  395
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  TGTAGTTTCCCATTGACTTTAATCACAGGACATGGTAGTACTAAGAGACA  396

seq1  CCCTAAGGGATCTCCTGCACTCCAGACATAATCTTGCTTACCACCATTGT  445
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  CCCTAAGGGATCTCCTACACTCCAGACATAATCTTGCTTACCACCATTGT  446

seq1  GAAGAGGTAATCCAATTTCCCCATGGTAATCTGGATCTATCACCCCTCCT  495
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  GAAGAGGTAACCCAATTTCCCCATGGTAATCTGGATCTATCACCCCTCCT  496

seq1  AACACTGTTATTCCTTTTTTAGCCTGTTGGTTTAAGGGCATTAGAAGCCC  545
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  AACACTGTTATTCCTTTTTTAGCCTGTTGGTTTAAGGGCATTCGAAGCCC  546

seq1  AAAATGACCAGGGG  559
      ||||||||||||||
seq2  AAAATGACCAGGGG  560