BAC Information

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BAC

Clone NameB6Ng01-115A03
Chromosome10 (Build37)
Map Location 61,559,569 - 61,684,556
singlet/doubletdoublet
Overlap gene2010107G23Rik, Neurog3, Tspan15
Upstream geneSgpl1, 1700021K02Rik, Adamts14, Prf1, EG237361, X99384, Nodal, Eif4ebp2, D830039M14Rik, Lrrc20, Npffr1, Ppa1, Sar1a, Tysnd1, Aifm2, H2afy2, LOC100039284, Col13a1, EG436164, EG432466
Downstream geneTacr2, Hk1, 2210417K05Rik, Hkdc1, Supv3l1, Vps26a, Srgn, 2510003E04Rik, Ddx21, Ddx50, Stox1, Ccar1, Cxxc6, Slc25a16, Dna2l, Rufy2, Hnrph3, 3110049J23Rik, Pbld, Atoh7, Mypn
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-115A03.bB6Ng01-115A03.g
ACCDH920382DH920383
length476597
definitionDH920382|Mus musculus domesticus DNA, BAC clone: B6Ng01-115A03, 5' end.DH920383|Mus musculus domesticus DNA, BAC clone: B6Ng01-115A03, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(61,559,569 - 61,560,052)(61,683,960 - 61,684,556)
sequence
cagcacctgagaggtggaggcggcaggatcagaagtccaaggccatcctc
agtgacctagcaaattcaaggtcagctttcattacgtgagaccctggccc
acctcacccaatttttttctcttttaaatctatttcaagtgtggacctgt
gaactagctcagggagagagagcctgcttaggttagggctgtgtgttaga
cataacaacaataaaacaagcagaatgctaaaggagaaagaaacaagatg
gacgaacagaaaggaatgtgggattcataatgagataggctgtacagaga
gtttcagaactggtctgacccgggcaaaatgtcaccaagtctttcatttt
ctgaggctgaattcccatgatatctcaagatggcttctagaatctctccc
tgcttctgggcagggggttgggcgggggaagtgtgtgtgtgtgtgtgtgt
gtgtgtgtgtgtgtgtgtgagagaga
gaattccagtgccagcctgctccacccacagcaaagatgccttctgggtg
aactagggcacaggacacagggaaaggcttacccagaaaggactctggac
atgagttggtttgggttgacactttagttggagacaggaggctagaccag
ctgttctttctagggcaggtagggaaagtacagtaattcattctgtcaat
gagttgacacctcctgtagaccagacacgtacagtacaggacacaaccat
gaacaagaaaggtctttgggtaaagccttggagggacatattgctaaggt
gggaattcgggagtcagtgggaaaggctaggaattcccactttaggtgtt
ctggtcaaagaaagtcttcaccaggagctggcttggggggggggttgcaa
ttgacaaggaacatcccgtagagaacaccccaggcaggcagggcaggcag
gcaggtgggcagggtagggcagggcaggcaggcaggcagggtgcaaagta
caaaggccatgaggcaggcaaggcagggccgaggctggtgcagaggagga
acctagaagaagccagatatgggtggagagggagaggggatttgatt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_61559569_61560052
seq2: B6Ng01-115A03.b_49_530

seq1  GAATTCCAGCACCTGAGAGGTGGAGGCGGCAGGATCAGAAGTCCAAGGCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGCACCTGAGAGGTGGAGGCGGCAGGATCAGAAGTCCAAGGCC  50

seq1  ATCCTCAGTGACCTAGCAAATTCAAGGTCAGCTTTCATTACGTGAGACCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTCAGTGACCTAGCAAATTCAAGGTCAGCTTTCATTACGTGAGACCC  100

seq1  TGGCCCACCTCACCCAATTTTTTTCTCTTTTAAATCTATTTCAAGTGTGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCCCACCTCACCCAATTTTTTTCTCTTTTAAATCTATTTCAAGTGTGG  150

seq1  ACCTGTGAACTAGCTCAGGGAGAGAGAGCCTGCTTAGGTTAGGGCTGTGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGTGAACTAGCTCAGGGAGAGAGAGCCTGCTTAGGTTAGGGCTGTGT  200

seq1  GTTAGACATAACAACAATAAAACAAGCAGAATGCTAAAGGAGAAAGAAAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAGACATAACAACAATAAAACAAGCAGAATGCTAAAGGAGAAAGAAAC  250

seq1  AAGATGGACGAACAGAAAGGAATGTGGGATTCATAATGAGATAGGCTGTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATGGACGAACAGAAAGGAATGTGGGATTCATAATGAGATAGGCTGTA  300

seq1  CAGAGAGTTTCAGAACTGGTCTGACCCGGGCAAAATGTCACCAAGTCTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGAGTTTCAGAACTGGTCTGACCCGGGCAAAATGTCACCAAGTCTTT  350

seq1  CATTTTCTGAGGCTGAATTCCCATGATATCTCAAGATGGCTTCTAGAATC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTTCTGAGGCTGAATTCCCATGATATCTCAAGATGGCTTCTAGAATC  400

seq1  TCTCCCTGCTTCTGGGCAGGGGGTTGGGCGGGGGAAGTGTGTGTGTGTGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCCTGCTTCTGGGCAGGGGGTTGGGCGGGGGAAGTGTGTGTGTGTGT  450

seq1  GTGTGTGTGTGTGTGTGTGTATGTAAGAGAGAGA  484
      |||||||||||||||||||| ||| |||||||  
seq2  GTGTGTGTGTGTGTGTGTGTGTGTGAGAGAGA--  482

seq1: chr10_61683960_61684556
seq2: B6Ng01-115A03.g_68_664 (reverse)

seq1  AATCAAATCCCCTCTCCCTCTCCACCCATATCTGGCTTCTTCTAGGTTCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCAAATCCCCTCTCCCTCTCCACCCATATCTGGCTTCTTCTAGGTTCC  50

seq1  TCCTCTGCACCAGCCTCGGCCCTGCCTTGCCTGCCTCATGGCCTTTGTAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCTGCACCAGCCTCGGCCCTGCCTTGCCTGCCTCATGGCCTTTGTAC  100

seq1  TTTGCACCCTGCCTGCCTGCCTGCCCTGCCCTACCCTGCCCACCTGCCTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCACCCTGCCTGCCTGCCTGCCCTGCCCTACCCTGCCCACCTGCCTG  150

seq1  CCTGCCCTGCCTGCCTGGGGTGTTCTCTACGGGATGTTCCTTGTCAATTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCCCTGCCTGCCTGGGGTGTTCTCTACGGGATGTTCCTTGTCAATTG  200

seq1  CAACCCCCCCCCCAAGCCAGCTCCTGGTGAAGACTTTCTTTGACCAGAAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACCCCCCCCCCAAGCCAGCTCCTGGTGAAGACTTTCTTTGACCAGAAC  250

seq1  ACCTAAAGTGGGAATTCCTAGCCTTTCCCACTGACTCCCGAATTCCCACC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTAAAGTGGGAATTCCTAGCCTTTCCCACTGACTCCCGAATTCCCACC  300

seq1  TTAGCAATATGTCCCTCCAAGGCTTTACCCAAAGACCTTTCTTGTTCATG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGCAATATGTCCCTCCAAGGCTTTACCCAAAGACCTTTCTTGTTCATG  350

seq1  GTTGTGTCCTGTACTGTACGTGTCTGGTCTACAGGAGGTGTCAACTCATT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGTGTCCTGTACTGTACGTGTCTGGTCTACAGGAGGTGTCAACTCATT  400

seq1  GACAGAATGAATTACTGTACTTTCCCTACCTGCCCTAGAAAGAACAGCTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGAATGAATTACTGTACTTTCCCTACCTGCCCTAGAAAGAACAGCTG  450

seq1  GTCTAGCCTCCTGTCTCCAACTAAAGTGTCAACCCAAACCAACTCATGTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTAGCCTCCTGTCTCCAACTAAAGTGTCAACCCAAACCAACTCATGTC  500

seq1  CAGAGTCCTTTCTGGGTAAGCCTTTCCCTGTGTCCTGTGCCCTAGTTCAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGTCCTTTCTGGGTAAGCCTTTCCCTGTGTCCTGTGCCCTAGTTCAC  550

seq1  CCAGAAGGCATCTTTGCTGTGGGTGGAGCAGGCTGGCACTGGAATTC  597
      |||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGAAGGCATCTTTGCTGTGGGTGGAGCAGGCTGGCACTGGAATTC  597