BAC Information

Click to search

BAC

Clone NameB6Ng01-117A19
Chromosome10 (Build37)
Map Location 83,106,104 - 83,267,305
singlet/doubletdoublet
Overlap geneAppl2, 1500009L16Rik
Upstream geneTdg, Glt8d2, Hcfc2, Nfyb, 1700028I16Rik, Txnrd1, Eid3, EG216185, Chst11, Slc41a2, D10Wsu102e, LOC666748, Aldh1l2, A230046K03Rik
Downstream geneLOC100041225, C230099D08Rik, LOC432482, Nuak1, Ckap4, Tcp11l2, Polr3b, Rfx4, EG625690
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-117A19.bB6Ng01-117A19.g
ACCDH921889DH921890
length1,1211,069
definitionDH921889|Mus musculus domesticus DNA, BAC clone: B6Ng01-117A19, 5' end.DH921890|Mus musculus domesticus DNA, BAC clone: B6Ng01-117A19, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(83,106,104 - 83,107,245)(83,266,215 - 83,267,305)
sequence
gaattccttgcttctgactctgaggggcacataacatttgtctgtttttc
taatgaaacgcttcataatcagataccgtagttacattaacctcactttg
catgggaggaagctgacgctcctggctcctatgaaatgtgttcaaccctg
ttcaagcttcctttctgctgccgataagctacagtgcacactgacagaat
tcaggacaggagctcatgcagaaactatagaggaatgcttactgctccct
cttaggctcaggcttaagtacttcctgatacctcccagggccacctgccc
aaacaaaggtgccctcgtcccccaccggtacaaagcactggatccttcta
catcagttaacagtcaagacaggcaccaacaccaatcaaataaagagctg
cttctcggttatgacacgtacaactaaagctcccagggttgggaagtaga
ggggttgacttataaatccttgtccactgggaggacagtgtggtcaccaa
tggcaagtgtttcttcaatttgtgtgttctgtgtgtgccctctcaagact
ttccacacccgatgagactctttttaagccctccacattctatctctcac
agactgcagctgccagggaactgcatcttggtaacttgccatgttttaat
cttctgggcattggatttaactaaatcaccgctggcaaaaaacggccagc
tactgaaggactgctttgctgcacacattcatcatcatgctctctgctca
aatgtatgggccgagagtggggatgccctgacaatataggattgagggtc
acgacaggcatgccagctgctcaaagtctcatgaaaggcctaacactgat
tgtgtgcagtatgcgtagacagtaccgttaatcgtgagcacacagctcat
gaacaggaaagctcagagagggtgaatgaaagctcaacgtaaagtggcac
gctcgtgaatgtctatcctacgtcgtatgtaagctctgcaatcagcaata
gactagcactgtggatctggcataagctcgactgcctctttaccttaatc
atccggatatactattcagaaaggtctacgttctgccagacacacgaatg
ttaacgtcaatttcaatagca
gaattcctctcttccatctcacgaccagcgacttgactcctctaagcgcc
agaaacccttacagtacggaagcacatatttttccaagcccagtagcgcc
tactccagccatccatacattcatttattcctccaccaaactatgttcaa
tgaaaatatttttccaattatcaaccaataggtgcatggttcttgtttcc
ttaaggtttgctttttctttttctttttagcacatttccaattaattcgt
tgcagcaggtcctccagcgtcccctccgaagccttggctcagctcataac
cagcaccctgctctcttcaaaacatttatggtggcacaacgtccctgtct
tcatctttccagaattgattgagttttctccgcagccaccctggcaactg
gggaggccctttctttaacaaatatgaacagtagaggctctttatattct
gttctctgagctgaaaaaggaaattgaaagagtgctttgtataaagctct
agaggggaaaaaaaaacatgaatttgactggttttattggaaatctaaaa
atcttggaggagaccatgaagaagaaatttcaaatgacaaaacattctgg
gctgatgtgagacctagtgccaggtttgtactgaccgactcatccctgtc
tgctgaacagcatttaataggaaacatttataatttcccatgatcacctg
cctgctttgtgactcagctacatgtcccactatcaggtcttacagagcac
aaggatatcataggtgtatgtccggtgactcatctgagatgtgtggggca
tctctcctccaaggggataacctgggcttcttataccatgagagatgtct
cactagcaaggatgggcaagcatcacacaggaaacttctatagtgttctg
caccctgtagacagatcaaatgacacagcagtcctgcctcagcagagaac
tagatgcccatcatcgtaatttgagctgagggaaacaaagtagtcatttc
ttctccttctgcagaatgcattgtactactgatacttcatctctctatca
ggctgtgtgcagctcacca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_83106104_83107245
seq2: B6Ng01-117A19.b_37_1160

seq1  GCGGAATTCCTTGCATCAGACACTGACGGGCACAGAACATTTGTCACGTT  50
      |||||||||||||| || ||| |||| ||||||| ||||||||||   ||
seq2  GCGGAATTCCTTGCTTCTGACTCTGAGGGGCACATAACATTTGTCTGTTT  50

seq1  TTCTAATGAAACAACTTCATAATCAGATACCGTAGTTACATTAACCTCAC  100
      ||||||||||||  ||||||||||||||||||||||||||||||||||||
seq2  TTCTAATGAAAC-GCTTCATAATCAGATACCGTAGTTACATTAACCTCAC  99

seq1  TTTACAGGGGATGAAGCTGAGGCTCAGGGCAGCTATGAAATGTATTCAAC  150
      ||| || |||| |||||||| ||||  |||  ||||||||||| ||||||
seq2  TTTGCATGGGAGGAAGCTGACGCTCCTGGCTCCTATGAAATGTGTTCAAC  149

seq1  GCTGTTCGAGCTTCCTTTCTGCTGCCTATAAGCTACAGTGCACACTGAGA  200
       |||||| |||||||||||||||||| ||||||||||||||||||||| |
seq2  CCTGTTCAAGCTTCCTTTCTGCTGCCGATAAGCTACAGTGCACACTGACA  199

seq1  GAAGTCAGGACAGGAGCTCATGCAGAAACTATAGAGGAATGCTTACTGCT  250
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGGACAGGAGCTCATGCAGAAACTATAGAGGAATGCTTACTGCT  249

seq1  CCCTCTTAGGCTCAGGCTTAGGTACTTCCTGATACAGCCCAGGGCCACCT  300
      |||||||||||||||||||| ||||||||||||||  |||||||||||||
seq2  CCCTCTTAGGCTCAGGCTTAAGTACTTCCTGATACCTCCCAGGGCCACCT  299

seq1  GCCCAGAGAAAGGTGCCCTCGTCCCCAACCTGGACAAAGCACTGGATCCT  350
      ||||| | |||||||||||||||||| ||| | |||||||||||||||||
seq2  GCCCAAACAAAGGTGCCCTCGTCCCCCACCGGTACAAAGCACTGGATCCT  349

seq1  TCTACATCAGTTAACAGTCAAGACAGTCACCAAGACCAATCAGATAAAGA  400
      |||||||||||||||||||||||||| |||||| |||||||| |||||||
seq2  TCTACATCAGTTAACAGTCAAGACAGGCACCAACACCAATCAAATAAAGA  399

seq1  GCTGCTTCTCGGTTATGACACAGACAACTAAGGCTCCCAGGGCTGGGAAG  450
      |||||||||||||||||||||  |||||||| |||||||||| |||||||
seq2  GCTGCTTCTCGGTTATGACACGTACAACTAAAGCTCCCAGGGTTGGGAAG  449

seq1  TAGAGGGGTTGACATATAAATCCAGGTCCACTGCAAGGACAGTGTGGTCA  500
      ||||||||||||| |||||||||  ||||||||  |||||||||||||||
seq2  TAGAGGGGTTGACTTATAAATCCTTGTCCACTGGGAGGACAGTGTGGTCA  499

seq1  CCAGTGGCAAGCGTTTCATCAGCAGGTGTGTTCTGTGTGTGCCAGCTCAA  550
      ||| ||||||| ||||| |||    ||||||||||||||||||  |||||
seq2  CCAATGGCAAGTGTTTCTTCAATTTGTGTGTTCTGTGTGTGCCCTCTCAA  549

seq1  GACACAGCACACCCGAGTCAGACTCTTTTTAAGCCCTCCACATTCTATCT  600
      |||    ||||||||| | |||||||||||||||||||||||||||||||
seq2  GACTTTCCACACCCGA-TGAGACTCTTTTTAAGCCCTCCACATTCTATCT  598

seq1  CTCACAGACAGCAACTGCCAGGGAACTGCATCATGGTAACTTGCCTTGTT  650
      ||||||||| ||| |||||||||||||||||| |||||||||||| ||||
seq2  CTCACAGACTGCAGCTGCCAGGGAACTGCATCTTGGTAACTTGCCATGTT  648

seq1  TTAATCTTCTGGGCATTGGATTTAACTAGATCACCCCTGGCAAAGAACGG  700
      |||||||||||||||||||||||||||| |||||| |||||||| |||||
seq2  TTAATCTTCTGGGCATTGGATTTAACTAAATCACCGCTGGCAAAAAACGG  698

seq1  CCAGCTACTGAGGGACTGCTTTGCTGCACACATTCGTCAGCATGCTCTCT  750
      ||||||||||| ||||||||||||||||||||||| ||| ||||||||||
seq2  CCAGCTACTGAAGGACTGCTTTGCTGCACACATTCATCATCATGCTCTCT  748

seq1  GCTCAAATGTATGGGCGGAGAGTGGGGATGCCCTGACCTATATAGGAGTG  800
      |||||||||||||||| ||||||||||||||||||| | |||||||| ||
seq2  GCTCAAATGTATGGGCCGAGAGTGGGGATGCCCTGA-CAATATAGGATTG  797

seq1  AGGGTCAGGACAGGCATGCCAGCTGCTCAAAGTCTCATGAAAAGGCCCAA  850
      ||||||| ||||||||||||||||||||||||||||||| ||||||| ||
seq2  AGGGTCACGACAGGCATGCCAGCTGCTCAAAGTCTCATG-AAAGGCCTAA  846

seq1  CACTG-CTGTGTGCTGTTTGCAGAGACAGTACCATCATTCGGCAGCACAC  899
      |||||  ||||||| || |||  |||||||||| | | |||  |||||||
seq2  CACTGATTGTGTGCAGTATGCGTAGACAGTACCGTTAATCGTGAGCACAC  896

seq1  AGCTCATGCACAGGAAAGCTCAGAGAGGGTGAATGAAAGCTCAAGGTAAC  949
      |||||||| ||||||||||||||||||||||||||||||||||| |||| 
seq2  AGCTCATGAACAGGAAAGCTCAGAGAGGGTGAATGAAAGCTCAACGTAA-  945

seq1  AGTGGCAGGCTCGTGGTTTGACCTATCCCACAGTC-TCAGGAAGCTCTGC  998
      ||||||| |||||||  |    |||||| || ||| |  | |||||||||
seq2  AGTGGCACGCTCGTGAAT--GTCTATCCTAC-GTCGTATGTAAGCTCTGC  992

seq1  AGTCAGGCAAACAAGACCAAGCACTGTGGGCCTGGCCTAAGCTCCGCTGG  1048
      | ||| ||||   ||| | ||||||||||  ||||| |||||||  || |
seq2  AATCA-GCAA--TAGA-CTAGCACTGTGGATCTGGCATAAGCTCGACT-G  1037

seq1  CCTTCCTTTACCTTAAACATCCGGGTGTTACCTATTCAAACAGGTCCTAC  1098
      |||  ||||||||||| ||||||| | |   ||||||| | |||| ||||
seq2  CCT--CTTTACCTTAATCATCCGGATAT--ACTATTCAGAAAGGT-CTAC  1082

seq1  GTTCTCACA-ACACACGATTGTTTAAGCGTCCAATTTCAATAGCA  1142
      |||||  || |||||||| ||||  | ||| ||||||||||||||
seq2  GTTCTGCCAGACACACGAATGTT--AACGT-CAATTTCAATAGCA  1124

seq1: chr10_83266215_83267305
seq2: B6Ng01-117A19.g_65_1133 (reverse)

seq1  TGGTGAGCTGCACACAGCCTGATTATAGAGGAATTGAAGGTATCAGTTGG  50
      |||||||||||||||||||||   ||||| ||  |||| ||||||| | |
seq2  TGGTGAGCTGCACACAGCCTG---ATAGA-GAGATGAA-GTATCAG-TAG  44

seq1  CACAATGCATGCTGCAGAAAGAAAAGAAAATGGCTACCTTTTTTTTTCCC  100
       ||||||||| |||||||| || ||| ||||| ||||   ||| ||||||
seq2  TACAATGCATTCTGCAGAAGGAGAAG-AAATGACTAC---TTTGTTTCCC  90

seq1  CTCCAGCTCCAATAACGAAGATGGGCATCTAAGTTCCACTGCTTGAGCTA  150
         |||||| ||| |||| ||||||||||| |||| | |||| ||||  |
seq2  --TCAGCTCAAATTACGATGATGGGCATCT-AGTT-CTCTGC-TGAGGCA  135

seq1  GGGCTGCCTGTGTCATTTGATCTGGCTACAGGGGTGGCAGAACACTCTAG  200
      || ||| ||||||||||||||||| ||||||||   |||||||||| |||
seq2  GGACTG-CTGTGTCATTTGATCTGTCTACAGGG--TGCAGAACACTATAG  182

seq1  AAGTGTTCCTGTATTGATGCTTGCCCATCCTTGCTAGTGAGACATCTCTC  250
      |||| |||||||  ||||||||||||||||||||||||||||||||||||
seq2  AAGT-TTCCTGT-GTGATGCTTGCCCATCCTTGCTAGTGAGACATCTCTC  230

seq1  ATGGTATGAAGAAGCCCAGGTTATCCCCTTGGAGGAGAGATGCCCCACAC  300
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGTAT-AAGAAGCCCAGGTTATCCCCTTGGAGGAGAGATGCCCCACAC  279

seq1  ATCTCAGCTGTGTCACCGGACATACACCTATGATATCCTTGTGCTCTCTA  350
      ||||||| || |||||||||||||||||||||||||||||||||||| ||
seq2  ATCTCAGATGAGTCACCGGACATACACCTATGATATCCTTGTGCTCTGTA  329

seq1  AGGCCCTGCTAGTGGGACATGTAGCTGAGTCACAAAGCAGGCAGGTGATC  400
      | | |||| |||||||||||||||||||||||||||||||||||||||||
seq2  A-GACCTGATAGTGGGACATGTAGCTGAGTCACAAAGCAGGCAGGTGATC  378

seq1  ATGGGAAATTATAAATGTTTCCTATTAACTGCTGTTCAGCAGACAGGGAT  450
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  ATGGGAAATTATAAATGTTTCCTATTAAATGCTGTTCAGCAGACAGGGAT  428

seq1  GAGTCGGTCAGTACAAACCTGGCACTAGGTCTCACATCAGCCCAGAATGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTCGGTCAGTACAAACCTGGCACTAGGTCTCACATCAGCCCAGAATGT  478

seq1  TTTGTCATTTGAAATTTTTTCTTCATGGTCTCCTCCAAGATTTTTAGATT  550
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  TTTGTCATTTGAAATTTCTTCTTCATGGTCTCCTCCAAGATTTTTAGATT  528

seq1  TCCAATAAAACCAGTCAAATTCATGTTTTTTTTTCCCCTCTAGAGCTTTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  TCCAATAAAACCAGTCAAATTCATGTTTTTTTTTCCCCTCTAGAGCTTTA  578

seq1  TACAAAGCACTCTTTCAATTTCCTTTTTCAGCTCAGAGAACAGAATATAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAAAGCACTCTTTCAATTTCCTTTTTCAGCTCAGAGAACAGAATATAA  628

seq1  AGAGCCTCTACTGTTCATATTTGCTAAAGAAAGGGCCTCCCCAGCTGCCA  700
      ||||||||||||||||||||||| |||||||||||||||||||| |||||
seq2  AGAGCCTCTACTGTTCATATTTGTTAAAGAAAGGGCCTCCCCAGTTGCCA  678

seq1  GGGTGGCTGCGGAGAAAACACAATCACTGCTGGAAAGAAGAAGACAGGGC  750
      ||||||||||||||||||| |||||| | ||||||||| |||||||||| 
seq2  GGGTGGCTGCGGAGAAAACTCAATCAATTCTGGAAAGATGAAGACAGGGA  728

seq1  TGTTGCGCCACCATAAATGTTTTGAAGAGAGCAGGGTGCTGGTTATGAGC  800
       |||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTTGTGCCACCATAAATGTTTTGAAGAGAGCAGGGTGCTGGTTATGAGC  778

seq1  TGAGCCAAGGCTTCGGAGGGGACGCTGGAGGACCTGCTGCAACGAATTAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCCAAGGCTTCGGAGGGGACGCTGGAGGACCTGCTGCAACGAATTAA  828

seq1  TTGGAAATGTGCTAAAAAGAAAAAGAAAAAGCAAACCCTAAGGAAACACG  900
      ||||||||||||||||||||||||||||||||||||| |||||||||| |
seq2  TTGGAAATGTGCTAAAAAGAAAAAGAAAAAGCAAACCTTAAGGAAACAAG  878

seq1  AACCATGCACCTTTTGGTTGCTTATTGGAAAAATATTTTCATTGAACATA  950
      |||||||||||| ||||||| | |||||||||||||||||||||||||||
seq2  AACCATGCACCTATTGGTTGATAATTGGAAAAATATTTTCATTGAACATA  928

seq1  GTTTGGTGGATGAATAAATGAATGTATGGATGGCTGGAGTATGTGCTACT  1000
      |||||||||| |||||||||||||||||||||||||||||| | ||||||
seq2  GTTTGGTGGAGGAATAAATGAATGTATGGATGGCTGGAGTAGGCGCTACT  978

seq1  GGGCTTGGAAAAATATGTGCTTCCCTACTGTCTGGGATTCTGGCGCTTAG  1050
      |||||||||||||||||||||||| ||||||  ||| |||||||||||||
seq2  GGGCTTGGAAAAATATGTGCTTCCGTACTGTAAGGGTTTCTGGCGCTTAG  1028

seq1  AGGAGTCAAGTCGCTGGTCCTGAGATGGAAGAGTGGAATTC  1091
      ||||||||||||||||||| ||||||||||||| |||||||
seq2  AGGAGTCAAGTCGCTGGTCGTGAGATGGAAGAGAGGAATTC  1069