BAC Information

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BAC

Clone NameB6Ng01-117L10
Chromosome3 (Build37)10 (Build37)
Map Location 48,898,894 - 48,900,001104,053,602 - 104,054,359
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC666208, 1700018B24Rik, LOC100039404
Downstream geneEG666230, 4932443G14, LOC545519, LOC676568, LOC666247, LOC100039579, LOC100039587, LOC638779, Pcdh18
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-117L10.bB6Ng01-117L10.g
ACCDH922383DH922384
length1,111917
definitionDH922383|Mus musculus domesticus DNA, BAC clone: B6Ng01-117L10, 5' end.DH922384|Mus musculus domesticus DNA, BAC clone: B6Ng01-117L10, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(48,898,894 - 48,900,001)(104,053,602 - 104,054,359)
sequence
gaattctgtacacctaggtggttcgatacatcattaatgtaccacgatag
tgatatagttataggtaaaggaaaatgaggaatattcttcaatgttgaat
gattttttaaaggatcaaagcagtctatgctcaagcagactatgtccaga
cccttgaaacatatagtccaacattcttcatgccaaactgacctaaaacc
ttacagaggcattaccattaagcaaccatgttacctagtttcaggtcctg
aagtagaagatgtcaaagctaaatgactcagtacattgcttttctgtttg
tttgctttattttgttttgttttgcttttttctgtagcaggggaatttat
cgtgatcacctatgatcaattaagtaaaaatctctttgggtgtgagtctc
tgcatctcttcccatgggcttctgggtggagcctttctttgctagaccaa
aagtagactcaagctcaaatacataatttctggcggaggttacccatgat
gcagttgcagcagtgcactgcatctggacttcaccagtcaccatgagcga
cactgcagtcactgatcctccagtgctgtaatatccaaagacaagaacgc
agtgtctctatacgattttctgattgtagctgtttaattgtggaaaacaa
agacaatatttttcaaacactattactccacatataaatatcagattacc
gtatgctgtaattgtgtggtatcagaatgtttgatattaaaatttggtgt
ttgagtttctgacttaagcgtcttaagaaaattaaaatggaattttgcct
tgggattaagataacatttgctataatttctgaagtcaccctaataacat
agccacttttaccatgtatttataagaatcagcattctcagaattgacag
ttatgaaagcaaaatatcaatctatcccaaaatattgacagctctctaga
acccaaagtatcaaatagttacacaaattactttcatttaaatttaatat
tatgtctatacatgaatgtacagatgctttacagagataaagggagataa
caaataatggttaaatacttttatgatagtcatgactgttagtagatccc
attatatgcct
gaattctctactgaggaatagcaaagggctgagaagcatcagaaaaaatc
tcacctgaggaataccgaatggcagagaagcacctgaaaaaatgttcaac
atccttaatcatcagggaaatgcaaatcaaaacaaccctgagattccact
tcacaccagttagaatggctaagatcaaaactcagaggacaacagatgct
ggtgaggatgcagagaaagagaacactcctccattgttggtgggattgca
agcgggtacaaccactctgcaaatcagtctggtggttcctcagaaaattg
cacatagtactactggaggatcccgcaatacctctcatgggcatataccc
agaagatgttccaactggtaataaggacacatgctccactatgttcataa
cagccctatttataatagccagaagctgtaaggaacccagatgtctctca
acagaggaatggatatagaaaatgtgttacatttacacaatggagtacta
ctcagctattaaaaacaatgaatttatgaaattcttaggcaagtggatgt
atctggaggatatcatcctgagtgaggtaacccaatcacaaaagaagtca
cttgatatgcactcacctcaaagtggatccccgcaatgacacagttcctc
caataagtctacacctcctcttagtgccacttcccatgggtcaagcattc
aaactaccacctgggtgggtaggaaagagaagatgatttgattgaacttg
ggttagaggttgtaggtgatgaaaatatattcaaatttaaaaaggtttta
gtaataaaaatatataagaaaccattaacaaaggcatttgaaatagcagt
tacacatataaactgatttctatatgcaatacaaatgagctacaaaaata
catttagtatcagataa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_48898894_48900001
seq2: B6Ng01-117L10.b_50_1143

seq1  GAATTCTGTACACCTAGGTGGTTCGATACATCATTAATGTACCACGATAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGTACACCTAGGTGGTTCGATACATCATTAATGTACCACGATAG  50

seq1  TGATATAGTTATAGGTAAAGGAAAATGAGGAATATTCTTCAATGTTGAAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATATAGTTATAGGTAAAGGAAAATGAGGAATATTCTTCAATGTTGAAT  100

seq1  GATTTTTTAAAGGATCAAAGCAGTCTATGCTCAAGCAGACTATGTCCAGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTTTTAAAGGATCAAAGCAGTCTATGCTCAAGCAGACTATGTCCAGA  150

seq1  CCCTTGAAACATATAGTCCAACATTCTTCATGCCAAACTGACCTAAAACC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTGAAACATATAGTCCAACATTCTTCATGCCAAACTGACCTAAAACC  200

seq1  TTACAGAGGCATTACCATTAAGCAACCATGTTACCTAGTTTCAGGTCCTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACAGAGGCATTACCATTAAGCAACCATGTTACCTAGTTTCAGGTCCTG  250

seq1  AAGTAGAAGATGTCAAAGCTAAATGACTCAGTACATTGCTTTTCTGTTTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTAGAAGATGTCAAAGCTAAATGACTCAGTACATTGCTTTTCTGTTTG  300

seq1  TTTGCTTTATTTTGTTTTGTTTTGCTTTTTTCTGTAGCAGGGGAATTTAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCTTTATTTTGTTTTGTTTTGCTTTTTTCTGTAGCAGGGGAATTTAT  350

seq1  CGTGATCACCTATGATCAATTAAGTAAAAATCTCTTTGGGTGTGAGTCTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTGATCACCTATGATCAATTAAGTAAAAATCTCTTTGGGTGTGAGTCTC  400

seq1  TGCATCTCTTCCCATGGGCTTCTGGGTGGAGCCTTTCTTTGCTAGACCAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATCTCTTCCCATGGGCTTCTGGGTGGAGCCTTTCTTTGCTAGACCAA  450

seq1  AAGTAGACTCAAGCTCAAATACATAATTTCTGGCGGAGGTTACCCATGAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTAGACTCAAGCTCAAATACATAATTTCTGGCGGAGGTTACCCATGAT  500

seq1  GCAGTTGCAGCAGTGCACTGCATCTGGACTTCACCAGTCACCATGAGCGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGTTGCAGCAGTGCACTGCATCTGGACTTCACCAGTCACCATGAGCGA  550

seq1  CACTGCAGTCACTGATCCTCCAGTGCTGTAATATCCAAAGACAAGAACGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGCAGTCACTGATCCTCCAGTGCTGTAATATCCAAAGACAAGAACGC  600

seq1  AGTGTCTCTATACGATTTTCTGATTGTAGCTGTTTAATTGTGGAAAACAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTCTCTATACGATTTTCTGATTGTAGCTGTTTAATTGTGGAAAACAA  650

seq1  AGACAATATTTTTCAAACACTATTACTCCACATATAAATATCAGATTACC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAATATTTTTCAAACACTATTACTCCACATATAAATATCAGATTACC  700

seq1  GTATGCTGTAATTGTGTGGTATCAGAATGTTTGATATTAAAATTTGGTGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATGCTGTAATTGTGTGGTATCAGAATGTTTGATATTAAAATTTGGTGT  750

seq1  TTGAGTTTCTGACTTAAGCGTCTTAAGAAAATTAAAATGGAATTTTGCCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGTTTCTGACTTAAGCGTCTTAAGAAAATTAAAATGGAATTTTGCCT  800

seq1  TGGGATTAAGATAACATTTGCTATAATTTCTGAAGTCACCCTAATAACAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGATTAAGATAACATTTGCTATAATTTCTGAAGTCACCCTAATAACAT  850

seq1  AGCCACTTTTACCATGTATTTATAAGAATCAGCATTCTCAGAATTGACAG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCACTTTTACCATGTATTTATAAGAATCAGCATTCTCAGAATTGACAG  900

seq1  TTATGAAAGCAAAATATCAATCTATCCCAAAATATTGACAGCTCTCTAGA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGAAAGCAAAATATCAATCTATCCCAAAATATTGACAGCTCTCTAGA  950

seq1  ACCCAAAGTATCAAATAGTTACACAAAATTAACTTTCATTTAAAATTTAA  1000
      |||||||||||||||||||||||||||  | |||||||||| ||||||||
seq2  ACCCAAAGTATCAAATAGTTACACAAA--TTACTTTCATTT-AAATTTAA  997

seq1  TAATTATGTCTATTACATGAATGTACAGATTGCTTTTACCAGAAGATTAA  1050
      | |||||||||| |||||||||||||||| ||||||   ||| ||| |||
seq2  T-ATTATGTCTA-TACATGAATGTACAGA-TGCTTT--ACAG-AGA-TAA  1040

seq1  AGGGAGATAACAAATAATGGTTTATAATTACTTTTATGATTAGTCATGAC  1100
      |||||||||||||||||||||   ||| ||||||||||| ||||||||||
seq2  AGGGAGATAACAAATAATGGT---TAAATACTTTTATGA-TAGTCATGAC  1086

seq1  TGTTAGTA  1108
      ||||||||
seq2  TGTTAGTA  1094

seq1: chr10_104053602_104054359
seq2: B6Ng01-117L10.g_115_658 (reverse)

seq1  TTTGTGATTGGGTTACCGCACTCAGGATGATACTCTCCAGGTCCATCCAT  50
      ||||||||||||||||| ||||||||||||||  |||||| | |||||| 
seq2  TTTGTGATTGGGTTACCTCACTCAGGATGATATCCTCCAGATACATCCAC  50

seq1  TTGCCTAGGAATTTCATAAATTCATTCTTTTTAATAGCTCCATTTACATT  100
      ||||||| |||||||||||||||||| |||||||||||            
seq2  TTGCCTAAGAATTTCATAAATTCATTGTTTTTAATAGC------------  88

seq1  TAATTTAATTAATGTAATTACAATTAATTAATTTATTAATTAAATAATTT  150
                                                        
seq2  --------------------------------------------------  88

seq1  AATAATTTAATTGATAAATTAATTTAATTAATTAATTTAATTAATTAAAT  200
                                                        
seq2  --------------------------------------------------  88

seq1  TAAATAATAATTTAATAATAAATTAAATATTTTAAAATTAATAATAATTT  250
                                                        
seq2  --------------------------------------------------  88

seq1  TATAAGTAAATAATTTAATTAATGTAATTTAATTAATGTAATTACATTAC  300
        | ||||                             |||          
seq2  --TGAGTA-----------------------------GTA----------  97

seq1  ATTTAATAGCTCCATTGTGTAAATGTACCACATTTTCTGTATCTATTCCT  350
               |||||||||||||||||| |||||||||| |||| ||||||
seq2  ---------CTCCATTGTGTAAATGTAACACATTTTCTATATCCATTCCT  138

seq1  CTGTTGAGGGGCATCTGGGTTCTTTCCAGCTCCTGGCTATTATAAATAAG  400
      |||||||| | ||||||||||| || ||||| |||||||||||||||| |
seq2  CTGTTGAGAGACATCTGGGTTCCTTACAGCTTCTGGCTATTATAAATAGG  188

seq1  GCTGCTATGAATATAGTGGAGCATGTGTCCTTCTTACCGGTTGGGGCATC  450
      |||| |||||| |||||||||||||||||||| ||||| |||||  ||||
seq2  GCTGTTATGAACATAGTGGAGCATGTGTCCTTATTACCAGTTGGAACATC  238

seq1  TTCTGGATATATGCCCAGAAGAGGTATTGCTGGATCCTCCGGTAGTACTA  500
      |||||| ||||||||||  ||||||||||| ||||||||| |||||||||
seq2  TTCTGGGTATATGCCCATGAGAGGTATTGCGGGATCCTCCAGTAGTACTA  288

seq1  TGTCCAATTTTCTGACGAACCGCCAGACGGATTTCCAGAGTGGTTGTACA  550
      ||| ||||||||||| ||||| |||||| ||||| |||||||||||||| 
seq2  TGTGCAATTTTCTGAGGAACCACCAGACTGATTTGCAGAGTGGTTGTACC  338

seq1  AGCCTGCAATCCCACCAACAATGGAGGAGTGTTCCTCTTTCTCCACATCC  600
       || ||||||||||||||||||||||||||||| |||||||||  |||||
seq2  CGCTTGCAATCCCACCAACAATGGAGGAGTGTT-CTCTTTCTCTGCATCC  387

seq1  TCGCCAGCATCTGCTGTCACCTGAATTTTTGATCTTAGCCATTCTGACTG  650
      || |||||||||| ||||  ||| | ||||||||||||||||||| ||||
seq2  TCACCAGCATCTGTTGTCCTCTG-AGTTTTGATCTTAGCCATTCTAACTG  436

seq1  GTGTGAGGTGGAATCTCAGGGTTGTTTTGATTTGCATTTCCCTGATGATT  700
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGAAGTGGAATCTCAGGGTTGTTTTGATTTGCATTTCCCTGATGATT  486

seq1  AAGGATGTTGAACATTTTTTCAGGTGCTTCTCTGCCATTCGGTATTCCTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGATGTTGAACATTTTTTCAGGTGCTTCTCTGCCATTCGGTATTCCTC  536

seq1  AGGTGAGA  758
      ||||||||
seq2  AGGTGAGA  544