BAC Information

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BAC

Clone NameB6Ng01-117O06
Chromosome5 (Build37)10 (Build37)
Map Location 134,986,380 - 134,987,54062,119,338 - 62,119,503
singlet/doubletsingletsinglet
Overlap geneClip2
Upstream geneLOC666038, LOC100039750, Gats, Wbscr16, Gtf2ird2, Ncf1, Gtf2i, LOC630424, Gtf2ird1, LOC100039820
Downstream geneEG666071, Gm52, Rfc2, Lat2, Eif4h, LOC638081, Limk1, Eln, Wbscr28, Cldn13, Wbscr27, Cldn4, Cldn3, Abhd11, Stx1a, Wbscr22, Wbscr18, Vps37d, Mlxipl, Tbl2, Bcl7b, LOC100040069, Baz1b, Fzd9, Fkbp6, Trim50, Nsun5, Pom121, Hip1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-117O06.bB6Ng01-117O06.g
ACCDH922511DH922512
length1,160745
definitionDH922511|Mus musculus domesticus DNA, BAC clone: B6Ng01-117O06, 5' end.DH922512|Mus musculus domesticus DNA, BAC clone: B6Ng01-117O06, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(134,986,380 - 134,987,540)(62,119,338 - 62,119,503)
sequence
gaattccccagggagaggctgggggcgtggctccgtggtaagcccctgcc
taaatgagaggtcccttgtttcaacccattgcacacacacacacacacac
acacacacacagagacccccccacacccacacccacacacacagggatgt
atatgcacgaaggatgtgtaaccagccagttatggatcagacgatgaagg
tacttgaggaggggcagagcttccgggaagccctactgcactgaacacaa
gcctcctacctctcaggatgtccatagaaaacacaggacaacagtctgag
ccaggggtagcagtgcatagccctaggaggtcaaggacagccaagctaca
tggtgagaccttgcctcaaaacaccaagtcaagacaaggactcttcagcg
ggcatactgtgtcagttagccctctggtcttcctcttcaccatcttcact
ctctcctcaaagttgagggctgaggtcccagtgtgcatttcctgggctgc
ccacagatatagacggtccctaggttccctttggggacacacgccaaaca
cgcagaggacagggacacggccctacctcatacatttacaaatggggttc
gctacagcttatggtacgtatacctatgaggcaactgaggtcctaaagtg
cccctacacaatgctgggacctgcgcccagctaggctcttggtgaacaca
actcccatgatgccttattttgaattggaaaaaaaaaaatgctgggcagt
ggtggcacgtgcctttaatcccagcacttgggaggcagaggcaggaggat
ttctgatttcgaggccagccagggctatacagagaaaccctgtctcgaaa
aaacaaacaaacaaacaaacaaaaattttgtttgagcttgcacacaatgt
atgtatgaatgtgtgcgtgcaggaggccagtttgatggtttgtttgtgta
tttatgtgtgtatatatgcatgtgagtgtgcatggggcaggctagtttga
tgggtgattatgtatgtgacattatgtacaccatacattcgctaccgagg
ccagaaaagaacactggagtgtcctaaattgatcactctctgccttattc
cctttgagaccgggttccgggaaaacctgtagctaaactggagccaggag
tcctagcgac
gaattcacttctgggatccgcatcaggtagcttaggggcaccatagggtc
agccaccctcttctggcctctgaagccactgtacttgtatgcatatatgc
agacacatacatgtaattaagtaaatattcagaggctggagtgatgcttc
aattaagagtagttacttggcctggcagtggtggtgcacgcctttaatcc
cagcacttgagaggcagaggcaggcagatttctgagttcaaggccagccc
agtctacagagtgagttccaggacagccagggctacacagagaaaccctg
tctccagaaaagaaaaggaaaggaaaggaaaaaaaaaaaaaaaagagtag
ttacttgtatcttccagcagccatgggttactgtgttcctgaaaggaaag
ctggggatgggatggatgggaaggatggcgaaagaaataacaagccagac
aaagttctctatcaaggctcaactctaattctagggtctgatttttaagg
ggagggggcatcccccactatgccaggatcttgcttggccaggatctcat
caggaaaacaggttcagcctctcagcagtagtggcatctcggaggaagca
agagatgcaacaggacaaaagactacctaggtccaccctaggtgggctag
cagctgtggcaaacactaggtctgaatcagccttctcgaggctgagggag
gggcacagttactgtccttgcagaagactcagttcaattcccagc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_134986380_134987540
seq2: B6Ng01-117O06.b_49_1208

seq1  GAATTCCCCAGGGAGAGGCTGGGGGCGTGGCTCCGTGGTAAGCCCCTGCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCCAGGGAGAGGCTGGGGGCGTGGCTCCGTGGTAAGCCCCTGCC  50

seq1  TAAATGAGAGGTCCCTTGTTTCAACCCATTGCACACACACACACACACAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATGAGAGGTCCCTTGTTTCAACCCATTGCACACACACACACACACAC  100

seq1  ACACACACACAGAGACCCCCCCACACCCACACCCACACACACAGGGATGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACACACAGAGACCCCCCCACACCCACACCCACACACACAGGGATGT  150

seq1  ATATGCACGAAGGATGTGTAACCAGCCAGTTATGGATCAGACGATGAAGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGCACGAAGGATGTGTAACCAGCCAGTTATGGATCAGACGATGAAGG  200

seq1  TACTTGAGGAGGGGCAGAGCTTCCGGGAAGCCCTACTGCACTGAACACAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTGAGGAGGGGCAGAGCTTCCGGGAAGCCCTACTGCACTGAACACAA  250

seq1  GCCTCCTACCTCTCAGGATGTCCATAGAAAACACAGGACAACAGTCTGAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTCCTACCTCTCAGGATGTCCATAGAAAACACAGGACAACAGTCTGAG  300

seq1  CCAGGGGTAGCAGTGCATAGCCCTAGGAGGTCAAGGACAGCCAAGCTACA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGGGTAGCAGTGCATAGCCCTAGGAGGTCAAGGACAGCCAAGCTACA  350

seq1  TGGTGAGACCTTGCCTCAAAACACCAAGTCAAGACAAGGACTCTTCAGCG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGAGACCTTGCCTCAAAACACCAAGTCAAGACAAGGACTCTTCAGCG  400

seq1  GGCATACTGTGTCAGTTAGCCCTCTGGTCTTCCTCTTCACCATCTTCACT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCATACTGTGTCAGTTAGCCCTCTGGTCTTCCTCTTCACCATCTTCACT  450

seq1  CTCTCCTCAAAGTTGAGGGCTGAGGTCCCAGTGTGCATTTCCTGGGCTGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCCTCAAAGTTGAGGGCTGAGGTCCCAGTGTGCATTTCCTGGGCTGC  500

seq1  CCACAGATATAGACGGTCCCTAGGTTCCCTTTGGGGACACACGCCAAACA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACAGATATAGACGGTCCCTAGGTTCCCTTTGGGGACACACGCCAAACA  550

seq1  CGCAGAGGACAGGGACACGGCCCTACCTCATACATTTACAAATGGGGTTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCAGAGGACAGGGACACGGCCCTACCTCATACATTTACAAATGGGGTTC  600

seq1  GCTACAGCTTATGGTACGTATACCTATGAGGCAACTGAGGTCCTAAAGTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTACAGCTTATGGTACGTATACCTATGAGGCAACTGAGGTCCTAAAGTG  650

seq1  CCCCTACACAATGCTGGGACCTGCGCCCAGCTAGGCTCTTGGTGAACACA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCTACACAATGCTGGGACCTGCGCCCAGCTAGGCTCTTGGTGAACACA  700

seq1  ACTCCCATGATGCCTTATTTTGAATTGGAAAAAAAAAAATGCTGGGCAGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCCCATGATGCCTTATTTTGAATTGGAAAAAAAAAAATGCTGGGCAGT  750

seq1  GGTGGCACGTGCCTTTAATCCCAGCACTTGGGAGGCAGAGGCAGGAGGAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGGCACGTGCCTTTAATCCCAGCACTTGGGAGGCAGAGGCAGGAGGAT  800

seq1  TTCTGATTTCGAGGCCAGCCAGGGCTATACAGAGAAACCCTGTCTCGAAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  TTCTGATTTCGAGGCCAGCCAGGGCTATACAGAGAAACCCTGTCTCG-AA  849

seq1  AAAACAAACAAACAAACAAACAAAAATTTTGTTTGAGCTTGCACACAATG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACAAACAAACAAACAAACAAAAATTTTGTTTGAGCTTGCACACAATG  899

seq1  TATGTATGAATGTGTGCGTGCAGGAGGCCAGTTTGATGGTTTGTTTGTGT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTATGAATGTGTGCGTGCAGGAGGCCAGTTTGATGGTTTGTTTGTGT  949

seq1  ATTTATGTGTGTATATATGCATGTGAGTGTGCATGGGGCAGGCTAGTTTG  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTATGTGTGTATATATGCATGTGAGTGTGCATGGGGCAGGCTAGTTTG  999

seq1  AT-GGTGTATATGTATGTGCACA-TATGTACA-CATACATTCGCATACAG  1047
      || ||||  |||||||||| ||| |||||||| ||||||||||| ||| |
seq2  ATGGGTGATTATGTATGTG-ACATTATGTACACCATACATTCGC-TACCG  1047

seq1  AGGCCAGAAGAGAACACT-GAGTGTCTTATA-TGATCACTCTCTGCCTTA  1095
      ||||||||| |||||||| ||||||| || | ||||||||||||||||||
seq2  AGGCCAGAAAAGAACACTGGAGTGTCCTAAATTGATCACTCTCTGCCTTA  1097

seq1  TTCCCTTTGAGACAGGGTGTCCTGATAAACCTGAAGCTAGACTGGAGGCC  1145
      ||||||||||||| |||| ||| |  ||||||| ||||| |||||| |||
seq2  TTCCCTTTGAGACCGGGT-TCCGGGAAAACCTGTAGCTAAACTGGA-GCC  1145

seq1  AGGGAGTCCTAGCGAC  1161
      | ||||||||||||||
seq2  A-GGAGTCCTAGCGAC  1160

seq1: chr10_62119338_62119503
seq2: B6Ng01-117O06.g_242_417

seq1  GGCAGTGGTGGCGCAAGCCTTTAATCCCAGCACTCGGGAGGCAGAGGCAG  50
      ||||||||||| ||| |||||||||||||||||| | |||||||||||||
seq2  GGCAGTGGTGGTGCACGCCTTTAATCCCAGCACTTGAGAGGCAGAGGCAG  50

seq1  GCAGATTTCTGAGTTCGAGGCCAGCCTGGTCTACAGAGTGAGTTCCAGGA  100
      |||||||||||||||| |||||||||  ||||||||||||||||||||||
seq2  GCAGATTTCTGAGTTCAAGGCCAGCCCAGTCTACAGAGTGAGTTCCAGGA  100

seq1  GAGCCAGGGCTATACAGAGAAACCCTGTCTCGAAAAACCA----------  140
       ||||||||||| |||||||||||||||||| | |||  |          
seq2  CAGCCAGGGCTACACAGAGAAACCCTGTCTCCAGAAAAGAAAAGGAAAGG  150

seq1  AAAGGAAAAAAAAAAAAAAAAGAGTA  166
      ||||||||||||||||||||||||||
seq2  AAAGGAAAAAAAAAAAAAAAAGAGTA  176