BAC Information

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BAC

Clone NameB6Ng01-118E04
Chromosome10 (Build37)
Map Location 88,399,928 - 88,545,768
singlet/doubletdoublet
Overlap geneTmem16d
Upstream geneTyms-ps, Pmch, 4930547N16Rik, EG626115, Nup37, Ccdc53, LOC667000, 1200002N14Rik, Gnptab, Sycp3, Chpt1, 8030451F13Rik, LOC667046, LOC627414, LOC100042998, EG435236, Spic, EG237433, Arl1, Utp20, Slc5a8
Downstream geneGas2l3, Nr1h4, EG627532, Slc17a8, Scyl2, Actr6, E030041M21Rik, E530015N03Rik, Anks1b, LOC100043039
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-118E04.bB6Ng01-118E04.g
ACCDH922786DH922787
length6721,093
definitionDH922786|Mus musculus domesticus DNA, BAC clone: B6Ng01-118E04, 5' end.DH922787|Mus musculus domesticus DNA, BAC clone: B6Ng01-118E04, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(88,545,097 - 88,545,768)(88,399,928 - 88,401,029)
sequence
gaattctgcattgctgctctaggtaacttctagaatccttttggtgctct
tcactcccactgtcattctgggctttaattatctcctgcctatcgtagat
gatttcctattccagactctgttgcaactcctttcaaattgtctttcttg
gccaaaatgaagtcaaaaggcttggcttaaacatagacctggatacactg
tcttcatttatctcttgcctcttttttctacctatattaatatgttatgc
cagtttggatttacatattgttgcagagtgttccttctggatagtatttt
atttactctcaccaagataatatataactggtcctcaaaaaaccctgctc
ccatgattggactttttgagtaagtcaaagatgcctctttcttttctccc
attggtaccctttatccccatcacctcatgctataatctatggtaggcat
tcccatctcctcactgagatagtctggaaagccaaggatagaattctctg
ttccacattttcagcatctagtacctaatttgtgggctagacgaactcat
aaatcttatacatgtacaagaggagtcaggtaggaggaaagatggccaca
gaagaaggaggagaaggaggaggaggaggaggaaacaaggaaagaaagag
gaggagggaggaggaggatggg
gaattcacgtgacctttttcaccctgaaagtgagatgagagctttgcgat
ttaatttcatcaagccgaaggatactttgagaagtaccagttttatcctt
cattcctgtttcatgagcactcctttttctcattttaaaaattcccattt
tactttcctctttgtttaggcggactcagctcaaagggcactgagtatct
gttgagggtgtttcctcacggtgttcccgtccacttctgcacagggagct
ctaggatcctcttctgttttcctctgctccccttttgtcccctggatgcc
ccacagtggccacgtcacagtctggcctggcctgtgtcggcatcacctgg
aagggctgggctgtactcctgctttctgattaagcagcactggcacagag
ccctggatttgaagtctctgtttctcgaggaagatggtggttccggtctg
tgaatcacttactgactgacgattgtgctgctaatccacagtgacctctt
tggaagctcaatctgatgaccctcttgactcaagagttgctatgtcctcc
ttgtataataaagcccacacccttcagtcagaggtttttgttttgttgtt
gttgttgttttcgagacagggtttctctgtatagccctggctgtcctgga
actcactctgtagaccaggctggccttgaattcagaaatccacctgcctc
tgcctcccaagtgctgggattaaaggcgtgtgccaccaccgcctggcaag
tcagattactgtgctgtcactttctgtgtcacactgggaaatcccatgat
gcactatgcatgctacacactcctgttttctcattattttaaatgcctcc
tcttacatgggcagcccaacaaatacctttgaaacaaatagttgctcggc
tgttagaagctagcagcatgtacctcatttccctttctctgtttctttgg
gtggtttatcttgtactactgacacctttagcatttactcacacatgtag
atgcactggagctctctcttcagtggtaacacgactctattctgcactgg
gatgtttttctgttagctcggttttccttcccagctcagctcc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_88545097_88545768
seq2: B6Ng01-118E04.b_46_717 (reverse)

seq1  CCCATCCTCCTCCTCCCTCCTCCTCTTTCTTTCCTTGTTTCCTCCTCCTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCATCCTCCTCCTCCCTCCTCCTCTTTCTTTCCTTGTTTCCTCCTCCTC  50

seq1  CTCCTCCTTCTCCTCCTTCTTCTGTGGCCATCTTTCCTCCTACCTGACTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTCCTTCTCCTCCTTCTTCTGTGGCCATCTTTCCTCCTACCTGACTC  100

seq1  CTCTTGTACATGTATAAGATTTATGAGTTCGTCTAGCCCACAAATTAGGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTGTACATGTATAAGATTTATGAGTTCGTCTAGCCCACAAATTAGGT  150

seq1  ACTAGATGCTGAAAATGTGGAACAGAGAATTCTATCCTTGGCTTTCCAGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAGATGCTGAAAATGTGGAACAGAGAATTCTATCCTTGGCTTTCCAGA  200

seq1  CTATCTCAGTGAGGAGATGGGAATGCCTACCATAGATTATAGCATGAGGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATCTCAGTGAGGAGATGGGAATGCCTACCATAGATTATAGCATGAGGT  250

seq1  GATGGGGATAAAGGGTACCAATGGGAGAAAAGAAAGAGGCATCTTTGACT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGGGGATAAAGGGTACCAATGGGAGAAAAGAAAGAGGCATCTTTGACT  300

seq1  TACTCAAAAAGTCCAATCATGGGAGCAGGGTTTTTTGAGGACCAGTTATA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTCAAAAAGTCCAATCATGGGAGCAGGGTTTTTTGAGGACCAGTTATA  350

seq1  TATTATCTTGGTGAGAGTAAATAAAATACTATCCAGAAGGAACACTCTGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTATCTTGGTGAGAGTAAATAAAATACTATCCAGAAGGAACACTCTGC  400

seq1  AACAATATGTAAATCCAAACTGGCATAACATATTAATATAGGTAGAAAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAATATGTAAATCCAAACTGGCATAACATATTAATATAGGTAGAAAAA  450

seq1  AGAGGCAAGAGATAAATGAAGACAGTGTATCCAGGTCTATGTTTAAGCCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGCAAGAGATAAATGAAGACAGTGTATCCAGGTCTATGTTTAAGCCA  500

seq1  AGCCTTTTGACTTCATTTTGGCCAAGAAAGACAATTTGAAAGGAGTTGCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTTTTGACTTCATTTTGGCCAAGAAAGACAATTTGAAAGGAGTTGCA  550

seq1  ACAGAGTCTGGAATAGGAAATCATCTACGATAGGCAGGAGATAATTAAAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAGTCTGGAATAGGAAATCATCTACGATAGGCAGGAGATAATTAAAG  600

seq1  CCCAGAATGACAGTGGGAGTGAAGAGCACCAAAAGGATTCTAGAAGTTAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGAATGACAGTGGGAGTGAAGAGCACCAAAAGGATTCTAGAAGTTAC  650

seq1  CTAGAGCAGCAATGCAGAATTC  672
      ||||||||||||||||||||||
seq2  CTAGAGCAGCAATGCAGAATTC  672

seq1: chr10_88399928_88401029
seq2: B6Ng01-118E04.g_68_1160

seq1  GAATTCACGTGACCTTTTTCACCCTGAAAGTGAGATGAGAGCTTTGCGAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACGTGACCTTTTTCACCCTGAAAGTGAGATGAGAGCTTTGCGAT  50

seq1  TTAATTTCATCAAGCCGAAGGATACTTTGAGAAGTACCAGTTTTATCCTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATTTCATCAAGCCGAAGGATACTTTGAGAAGTACCAGTTTTATCCTT  100

seq1  CATTCCTGTTTCATGAGCACTCCTTTTTCTCATTTTAAAAATTCCCATTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCCTGTTTCATGAGCACTCCTTTTTCTCATTTTAAAAATTCCCATTT  150

seq1  TACTTTCCTCTTTGTTTAGGCGGACTCAGCTCAAAGGGCACTGAGTATCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTTCCTCTTTGTTTAGGCGGACTCAGCTCAAAGGGCACTGAGTATCT  200

seq1  GTTGAGGGTGTTTCCTCACGGTGTTCCCGTCCACTTCTGCACAGGGAGCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGAGGGTGTTTCCTCACGGTGTTCCCGTCCACTTCTGCACAGGGAGCT  250

seq1  CTAGGATCCTCTTCTGTTTTCCTCTGCTCCCCTTTTGTCCCCTGGATGCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGGATCCTCTTCTGTTTTCCTCTGCTCCCCTTTTGTCCCCTGGATGCC  300

seq1  CCACAGTGGCCACGTCACAGTCTGGCCTGGCCTGTGTCGGCATCACCTGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACAGTGGCCACGTCACAGTCTGGCCTGGCCTGTGTCGGCATCACCTGG  350

seq1  AAGGGCTGGGCTGTACTCCTGCTTTCTGATTAAGCAGCACTGGCACAGAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGGCTGGGCTGTACTCCTGCTTTCTGATTAAGCAGCACTGGCACAGAG  400

seq1  CCCTGGATTTGAAGTCTCTGTTTCTCGAGGAAGATGGTGGTTCCGGTCTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGGATTTGAAGTCTCTGTTTCTCGAGGAAGATGGTGGTTCCGGTCTG  450

seq1  TGAATCACTTACTGACTGACGATTGTGCTGCTAATCCACAGTGACCTCTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATCACTTACTGACTGACGATTGTGCTGCTAATCCACAGTGACCTCTT  500

seq1  TGGAAGCTCAATCTGATGACCCTCTTGACTCAAGAGTTGCTATGTCCTCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAAGCTCAATCTGATGACCCTCTTGACTCAAGAGTTGCTATGTCCTCC  550

seq1  TTGTATAATAAAGCCCACACCCTTCAGTCAGAGGTTTTTGTTTTGTTGTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTATAATAAAGCCCACACCCTTCAGTCAGAGGTTTTTGTTTTGTTGTT  600

seq1  GTTGTTGTTTTCGAGACAGGGTTTCTCTGTATAGCCCTGGCTGTCCTGGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGTTGTTTTCGAGACAGGGTTTCTCTGTATAGCCCTGGCTGTCCTGGA  650

seq1  ACTCACTCTGTAGACCAGGCTGGCCTTGAATTCAGAAATCCACCTGCCTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCACTCTGTAGACCAGGCTGGCCTTGAATTCAGAAATCCACCTGCCTC  700

seq1  TGCCTCCCAAGTGCTGGGATTAAAGGCGTGTGCCACCACCGCCTGGCAAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTCCCAAGTGCTGGGATTAAAGGCGTGTGCCACCACCGCCTGGCAAG  750

seq1  TCAGATTACTGTGCTGTCACTTTCTGTGTCACACTGGGAAATCCCATGAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGATTACTGTGCTGTCACTTTCTGTGTCACACTGGGAAATCCCATGAT  800

seq1  GCACTATGCATGCTACACACTCCTGTTTTCTCATTATTTTAAATGCCTCC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACTATGCATGCTACACACTCCTGTTTTCTCATTATTTTAAATGCCTCC  850

seq1  TCTTACATGGGCAGCCCAACAAATACCTTTGAAACAAATAGTTGCTCGGC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTACATGGGCAGCCCAACAAATACCTTTGAAACAAATAGTTGCTCGGC  900

seq1  TGTTAGAAGCTAGCAGCATGTACCTCATTTCCCTTTCTTCTGTTTCTTTG  950
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  TGTTAGAAGCTAGCAGCATGTACCTCATTTCCCTTTC-TCTGTTTCTTTG  949

seq1  GGTGGTTTTATCTTGTACTTACTGACACCTTTAGCAATTTACTTCACACA  1000
      ||||| |||||||||||| |||||||||||||||| |||||| |||||||
seq2  GGTGG-TTTATCTTGTAC-TACTGACACCTTTAGC-ATTTAC-TCACACA  995

seq1  TGTAGGATGCACT-GAGCTCTCTCTTCAGTGGTACACACGACTCTATTTC  1049
      |||| |||||||| |||||||||||||||||||| ||||||||||| |||
seq2  TGTA-GATGCACTGGAGCTCTCTCTTCAGTGGTA-ACACGACTCTA-TTC  1042

seq1  TGCACTGGGATG-TTTTCTGTTAGCTCGTGTTTTCCCTCCCAGCTCCAAG  1098
      |||||||||||| ||||||||||||||| ||||||| |||||||||  ||
seq2  TGCACTGGGATGTTTTTCTGTTAGCTCG-GTTTTCCTTCCCAGCTC--AG  1089

seq1  CTCC  1102
      ||||
seq2  CTCC  1093