BAC Information

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BAC

Clone NameB6Ng01-123F16
Chromosome10 (Build37)
Map Location 7,174,870 - 7,175,978
singlet/doubletsinglet
Overlap geneLOC626333
Upstream geneMthfd1l, Plekhg1, Iyd, Ppp1r14c, EG666520, LOC100039303, LOC670558
Downstream geneLOC666541, 9230019H11Rik, LOC100041405, LOC672213, Lrp11, Pcmt1, Nup43, Lats1, Katna1, BC013529, Ppil4, LOC665035, Zc3h12d, Map3k7ip2, LOC100039046, Ust
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-123F16.bB6Ng01-123F16.g
ACCDH926541DH926542
length1,1111,160
definitionDH926541|Mus musculus domesticus DNA, BAC clone: B6Ng01-123F16, 5' end.DH926542|Mus musculus domesticus DNA, BAC clone: B6Ng01-123F16, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattccaacaagacatttccaaacacagtctttttattcattgagatct
tcatgcctacatacacgtatgtcaaccatattcatggcctccacttttaa
cttatttcttccagatccgctctcgccatctcccaactttgtgtctttct
taaaaatactgatgttagagactggagagatgcctcagtgcttaagacca
ctgactgctcctccatagaacctgggctcaattttcaattctcagcatca
acattgtggctcacaatggactctaattcaactgtagggaatcaaatgtc
tctctggcttctaccagcattgaatgacatggtgctcatacatatgtgta
ctaaagcatccataaacatggcataaaaataaacattagaaatgagtaca
tatagaataactctttaaacaacagaaagaaaaacttaccactgtaaaca
ctgaatcgggcattccttctacatgatggttaatgagccttgaaggcaga
gaatatgatatagatgctggagaactagaggctggtggatttctgtgagt
tccatgtcacactggtctacacaatgagaccctgcttaataaaaattgtt
ctcaccagtgaattatgcactttatgctctccataattttagagtccttg
ggttattattatttttatttgttgtcactatgtgtatgcatcacatgtgt
gtgcaccatgtgtgtgtaccatgtgtgtgtgcaatgtggggtttacatca
ttgagtgtgtgtgtgtacctagtgtgtgtgcaccaggtgtatgtgcacct
agtgtgtgtacatcatgtgtatgtgcaccatgtgtgcatcatgtgtatgt
gcaccatgtctatgtgtgagtgctagtacacttgtgcaaaagtgctcatg
cggaggtcagacgcagtaatcgtgagttcactcttctgtaccacagcttc
tggatgtacacagaggagctttctctggagcacagttgagaagcagcggc
tgacccagaacctgcatcagatggttgacagctgcccaggacctttcagg
gttccctgccagattgccactgaaggacagccagctgtccgacggaaagg
gttcaaagttc
gaattctcacttgaggaatactgaatggctgagaagcatctgaaaaagtg
ttcagcatccttaatcatcagggaaatgcaaatcaaaacaaccctgagat
tccatctcacaccagtcagaatggctaagatcaaaaattcaggtgacagc
agatgctggcgaggatgtggagaaagaggaacactcctccattgttggtg
ggattgcaagcttgtacaaccactctggaaatcagtctggcggttcctca
gaaaattggacatagtactactggaggatcccgtaatacctctcctgggc
atatatccagaagatgttccaactggtaagaaagacacatgatccactat
gttcatagcagccttatttataatagccagaagctggaaagaacccagat
gcccctcaacagaggaatggatacaaaaaatgtggtacatttacataatg
tagtactactcagctattaaaaagaatggatttatgaaattcctaggcaa
gtggttggacctgaagggcatcatcccgagtgaggtaacacaatcacaaa
agaactcaaacgttatgtactcactgataagtggacattagcccagaaac
ttagtatacccaagatataagatacaatttgcaaaccacatgaaactgaa
gaagaacgaagactaaagtgtggacactttgccccttcttagaattggga
acaaaacacccatggaaggagttacagaaacaaagtttggagctgagaca
aaaggatggaccatctagaaactgccatatccaggatccatcccataatc
agcctccaaacaatgacaccattgcatacactagcaagattttgctgaaa
ggaccctgatatagctgtctcttgtgagactatgccggggccctagaaac
acagaagtggatgctcacagtcagctattggattggatcacagggccccc
aatggtagagctaagagaaagtatccaggagctaaggatcttcaaccctg
tagtgccacacattatgaaataacagtacccagactcttgatctagctgc
attggtatcaaagaatggcctagtcgtcatacctgggatagagagccatt
ggacatgcacctttatgccactagcacacaggacaaaatgggtagtggta
ggagatgtgg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_7174870_7175978
seq2: B6Ng01-123F16.b_47_1157 (reverse)

seq1  GAACTTGTAACCCTCTCCGTCTGACAGGCTGGCTGTCCCTGCAGTGGCAA  50
      ||||||  |||||| |||||| |||| ||||||||| ||| |||||||||
seq2  GAACTTTGAACCCTTTCCGTCGGACA-GCTGGCTGT-CCTTCAGTGGCAA  48

seq1  TCTGGCAGTGAAACCTGGAAGGTCCTGGGCAGCTGTCATACCATCTGATG  100
      |||||||| ||| |||| |||||||||||||||||||| |||||||||||
seq2  TCTGGCAGGGAACCCTGAAAGGTCCTGGGCAGCTGTCA-ACCATCTGATG  97

seq1  CAGGTTCTGGGTCAG-CGCTGC-TCTCCACTGTGCT-CAGAG-AAGCTCC  146
      ||||||||||||||| |||||| |||| |||||||| ||||| |||||||
seq2  CAGGTTCTGGGTCAGCCGCTGCTTCTCAACTGTGCTCCAGAGAAAGCTCC  147

seq1  TCTGTGTACATCCAGAAGCTGTGGTACAGGAGAGTGAACTCACGATTACT  196
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  TCTGTGTACATCCAGAAGCTGTGGTACAGAAGAGTGAACTCACGATTACT  197

seq1  GCGTCTGACCTCCGCATGAGCACTTTTGCACAAGTGTACTAGCACTCACA  246
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGTCTGACCTCCGCATGAGCACTTTTGCACAAGTGTACTAGCACTCACA  247

seq1  CATAGACATGGTGCACATACACATGATGCACACATGGTGCACATACACAT  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAGACATGGTGCACATACACATGATGCACACATGGTGCACATACACAT  297

seq1  GATGTACACACACTAGGTGCACATACACCTGGTGCACACACACTAGGTAC  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGTACACACACTAGGTGCACATACACCTGGTGCACACACACTAGGTAC  347

seq1  ACACACACACTCAATGATGTAAA-CCCACATTGCACACACACATGGTACA  395
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  ACACACACACTCAATGATGTAAACCCCACATTGCACACACACATGGTACA  397

seq1  CACACATGGTGCACACACATGTGATGCATACACATAGTGACAACAAATAA  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACATGGTGCACACACATGTGATGCATACACATAGTGACAACAAATAA  447

seq1  AAATAATAATAACCCAAGGACTCTAAAATTATGGAGAGCATAAAGTGCAT  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAATAATAACCCAAGGACTCTAAAATTATGGAGAGCATAAAGTGCAT  497

seq1  AATTCACTGGTGAGAACAATTTTTATTAAGCAGGGTCTCATTGTGTAGAC  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCACTGGTGAGAACAATTTTTATTAAGCAGGGTCTCATTGTGTAGAC  547

seq1  CAGTGTGACATGGAACTCACAGAAATCCACCAGCCTCTAGTTCTCCAGCA  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGTGACATGGAACTCACAGAAATCCACCAGCCTCTAGTTCTCCAGCA  597

seq1  TCTATATCATATTCTCTGCCTTCAAGGCTCATTAACCATCATGTAGAAGG  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATATCATATTCTCTGCCTTCAAGGCTCATTAACCATCATGTAGAAGG  647

seq1  AATGCCCGATTCAGTGTTTACAGTGGTAAGTTTTTCTTTCTGTTGTTTAA  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCCCGATTCAGTGTTTACAGTGGTAAGTTTTTCTTTCTGTTGTTTAA  697

seq1  AGAGTTATTCTATATGTACTCATTTCTAATGTTTATTTTTATGCCATGTT  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTTATTCTATATGTACTCATTTCTAATGTTTATTTTTATGCCATGTT  747

seq1  TATGGATGCTTTAGTACACATATGTATGAGCACCATGTCATTCAATGCTG  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGGATGCTTTAGTACACATATGTATGAGCACCATGTCATTCAATGCTG  797

seq1  GTAGAAGCCAGAGAGACATTTGATTCCCTACAGTTGAATTAGAGTCCATT  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGAAGCCAGAGAGACATTTGATTCCCTACAGTTGAATTAGAGTCCATT  847

seq1  GTGAGCCACAATGTTGATGCTGAGAATTGAAAATTGAGCCCAGGTTCTAT  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGCCACAATGTTGATGCTGAGAATTGAAAATTGAGCCCAGGTTCTAT  897

seq1  GGAGGAGCAGTCAGTGGTCTTAAGCACTGAGGCATCTCTCCAGTCTCTAA  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGAGCAGTCAGTGGTCTTAAGCACTGAGGCATCTCTCCAGTCTCTAA  947

seq1  CATCAGTATTTTTAAGAAAGACACAAAGTTGGGAGATGGCGAGAGCGGAT  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCAGTATTTTTAAGAAAGACACAAAGTTGGGAGATGGCGAGAGCGGAT  997

seq1  CTGGAAGAAATAAGTTAAAAGTGGAGGCCATGAATATGGTTGACATACGT  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGAAGAAATAAGTTAAAAGTGGAGGCCATGAATATGGTTGACATACGT  1047

seq1  GTATGTAGGCATGAAGATCTCAATGAATAAAAAGACTGTGTTTGGAAATG  1095
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATGTAGGCATGAAGATCTCAATGAATAAAAAGACTGTGTTTGGAAATG  1097

seq1  TCTTGTTGGAATTC  1109
      ||||||||||||||
seq2  TCTTGTTGGAATTC  1111