MoG+ -Mouse Genome database with high added value-

BAC Information

BAC name
Region	Chromosome -
Gene	search by nearby gene name.
Format	rows / page	Page	1

BAC

Clone Name	B6Ng01-123M06
Chromosome	X (Build37)	10 (Build37)
Map Location	118,654,643 - 118,655,702	82,765,105 - 82,765,479
singlet/doublet	singlet	singlet
Overlap gene	none
Upstream gene	Pcdh11x, LOC245576, LOC385419, EG434907
Downstream gene	EG245575, LOC100039544, Nap1l3
Link	Open Mouse BAC browser

Click to get alignment info.

name	Pcdh11x (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:245578 MGI:2442849
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC245576 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:245576
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 26 Proteins pseudo : _no_value

name	LOC385419 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:385419
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 17 Proteins pseudo : _no_value

name	EG434907 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:434907 MGI:3647868
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 3 mRNAs, 329 ESTs, 8 Proteins

name	EG245575 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:245575 MGI:3647043
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 3 ESTs, 13 Proteins

name	LOC100039544 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100039544
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST, 8 Proteins pseudo : _no_value

name	Nap1l3 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:54561 MGI:1859565
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Pcdh11x (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:124487050 GeneID:245578 MGI:2442849
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : protocadherin 11 X-linked transcript_id : NM_001081385.1

name	EG434907 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:149272151 GeneID:434907 MGI:3647868
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 3 mRNAs, 329 ESTs, 8 Proteins product : predicted gene, EG434907 transcript_id : XM_486849.5

name	EG245575 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:149272153 GeneID:245575 MGI:3647043
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 3 ESTs, 13 Proteins product : predicted gene, EG245575 transcript_id : XM_142100.7

name	Nap1l3 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:20270268 GeneID:54561 MGI:1859565
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : nucleosome assembly protein 1-like 3 transcript_id : NM_138742.1

name	Pcdh11x (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:124487051 GeneID:245578 MGI:2442849
definition	GO_component : GO:0016020 - membrane [Evidence IEA] GO_function : GO:0005509 - calcium ion binding [Evidence IEA]; GO:0005515 - protein binding [Evidence IPI] GO_process : GO:0007156 - homophilic cell adhesion [Evidence IEA] codon_start : 1 product : protocadherin 11 X-linked protein_id : NP_001074854.1

name	EG434907 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:149272152 GeneID:434907 MGI:3647868
definition	codon_start : 1 product : similar to Ubiquitin-like, containing PHD and RING finger domains, 1 protein_id : XP_486849.5

name	EG245575 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:149272154 GeneID:245575 MGI:3647043
definition	codon_start : 1 product : similar to RIKEN cDNA 9230105E10 gene protein_id : XP_142100.7

name	Nap1l3 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:20270269 CCDS:CCDS30372.1 GeneID:54561 MGI:1859565
definition	codon_start : 1 product : nucleosome assembly protein 1-like 3 protein_id : NP_620081.1

name	LOC245576 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:245576
definition	number : 1 pseudo : _no_value

name	LOC245576 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:245576
definition	number : 2 pseudo : _no_value

name	LOC385419 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:385419
definition	number : 2 pseudo : _no_value

name	LOC385419 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:385419
definition	number : 1 pseudo : _no_value

name	LOC100039544 (CDS detail)
type	misc_RNA
link	vega ensembl NCBI
xref	GI:149272157 GeneID:100039544
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST, 8 Proteins product : similar to SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 3 pseudo : _no_value transcript_id : XR_031017.1

clone name	MSMg01-520L24
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-405E10
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-075B22
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-080D10
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-143E07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-160A18
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-467O16
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-274L15
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-482A02
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-146K14
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-518F22
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-407N19
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-406G02
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-126M02
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-171F17
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-318O08
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-493I10
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-195L14
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-045J03
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-480C14
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-533E22
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-435D19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-215H18
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-371K22
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-483I21
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-540I20
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-494L22
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-141D01
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-455F13
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-052P14
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-435E08
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-378A02
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-463L02
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-046B19
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-387O05
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-105F01
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-395C19
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-547K10
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-392M04
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-309A20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-140J20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-307K02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-161L11
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-095E22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-080F07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-055H11
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-061A17
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-226B06
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-101A20
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-273F05
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-288L06
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-262D24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-109H16
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-019O10
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-015G09
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-315B02
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-101C15
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-123M06
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-313H03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-001K05
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-283P10
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-103I23
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-325D05
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-086O16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-015O09
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-244J18
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-137M13
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-003D17
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-195J23
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-151F07
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-262C06
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-102P07
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-037D21
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-186B07
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-263B02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-193G10
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-256B23
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-175B12
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-318E10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-020K01
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-308C08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-144J17
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-302P21
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-269L09
singlet/doublet	singlet
plural/unique	unique

BAC End Information

BAC end	BAC-end 1	BAC-end 2
end name	B6Ng01-123M06.b	B6Ng01-123M06.g
ACC	DH926844	DH926845
length	1,055	462
definition	DH926844\|Mus musculus domesticus DNA, BAC clone: B6Ng01-123M06, 5' end.	DH926845\|Mus musculus domesticus DNA, BAC clone: B6Ng01-123M06, 3' end.
singlet/doublet	singlet	singlet
BLAST hit	unique	unique
Map location.	(118,654,643 - 118,655,702)	(82,765,105 - 82,765,479)
sequence	gaattccatacaaatgctcttcagctaaattaatatataaaagataggag aactttataaggataaaaatattgctttctgttagaaaaagtttatccat atgctatgacaatcaatatgattgtctctttacaatttcaaaatgcatag attgtgacattgaaaactgggtaaaggaacttgatgcaaatcctgacaat ataagttaggtccctggaatctacataaggttggaagtagataatttcta gtaaaagtatccttggaactatacaccataactataccatatgccacccc ataataataagctaaaaaaaaattgaaacctaaaatgtagtaaaaactac aaataccacaagatctagctatattaatacacaccatgtaagtgaatatc tttaagatattttcacataagatttacttttgcagtcttcataacagctt tggaatggaaaaggcacacataaactgcttaatgtatatggagcatttga ttaagtcattaaaataaaagcacaaaatttgcaagactctcagtcaaaac tgtaaaatacaaatgccacatggtttctgctatctgtaaaatttggttga tatttgtatatataatcctggattatggtatgtgtgtgtgtgataaaaaa gaaagtgtaatatgagagtaggaagagatttgtggaagagagggcaatgg gatatatgtcataattcctccttttcctttctttctatctccttccctat ttaacatctttgttctagttttactttagtctctccataacaatatactc tatatgcctttccttgagagatcctccatcatttttttttttcttttaag aactgttctcatctttatgagtgtggtctcaaactcactggggtagaaac aaggacatcatacatcctagccagaaattctacctgatgaacttcacctg tagcactgtagtttctttttatttgtactttgacactttagattttattt acttttacacgatcttgagttattttcattaaagtatttagaatatattt tacat	atgcctgatatagggaatagaggagaactctctactaccattttcctaag caatataattcctaaatgcattctaaatgcatacgttttatacctacaga tatatctagctctcacacacttctctttaaagaatattccttttaactca gatggacatgagaacagtacaacctgtatacttaaggctcagagtactta aaggaatagggttgaaaggaaaagattgtgtaagagtacaataatgtatg ttgaaagattgcaatatacatatacatatacatacatacatatatatgta tatatatatatatatatatatatatatatatatatataagaagatatgta tatgtatagttgtctttatatacacgtatacaagatcataacaatactaa cagctcttgacatgttgaggtggatggagaaaactccacaaggtgtcacc cagatgaagagc
quality values	Open. Hide. 61 42 32 38 61 61 40 30 61 61 47 40 50 52 47 47 55 55 61 61 61 47 38 61 16 14 13 12 13 24 21 25 22 18 21 32 49 59 59 61 61 61 59 61 49 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 59 61 59 59 61 61 61 61 59 59 52 35 36 35 30 59 59 61 61 61 61 61 61 61 61 61 61 61 55 55 59 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 59 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 59 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 59 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 59 61 61 61 61 61 59 55 59 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 59 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 55 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 55 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 55 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 53 61 61 61 53 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 50 61 61 61 61 50 61 61 61 33 61 61 61 61 47 47 53 61 50 61 61 61 53 61 61 61 53 61 61 61 50 61 61 45 61 61 61 61 53 61 50 61 53 57 57 57 53 57 53 53 53 53 53 53 53 52 53 57 57 50 45 57 57 53 43 57 57 57 42 38 57 57 57 36 50 53 57 57 57 50 57 45 53 53 57 53 53 57 34 57 57 53 57 53 53 38 50 52 32 57 42 20 42 40 53 47 51 42 42 53 57 53 52 57 57 37 26 43 57 57 47 57 57 53 57 47 46 40 52 51 52 52 53 13 14 10 8 16 12 57 38 50 53 37 57 52 53 38 57 32 39 35 41 57 53 37 53 50 34 41 32 57 42 46 23 57 41 28 53 40 37 46 57 53 45 28 53 32 52 41 57 33 37 36 34 33 53 52 52 52 57 27 34 57 52 57 57 29 42 57 42 57 47 31 9 57 39 52 28 53 38 52 36 39 34 14 13 30 57 57 32 53 30 57 42 34 34 37 30 42 53 37 43 40 52 21 40 47 30 37 37 31 57 57 43 32 33 31 57 20 32 34 29 37 34 37 32 35 51 31 41 33 30 48 26 39 41 33 29 32 37 37 44 35 41 34 36 37 41 29 31 26 51 32 24 39 30 31 32 34 23 44 21 29 13 22 27 29 29 32 14 17 27 28 17 51 51 51 47 45 46 46 46 29 29 24 13 23 29 29 21 43 26 30 25 32 27 45 19 10 18 28 37 21 31 29 17 51 25 25 18 29 39 19 24 31 18 43 43 28 29 14 33 28 51 29 26 29 29 18 29 28 32 46 46 46 21 28 29 29 39 24 22 15 19 26 24 28 27 24 35 29 27 30 29 26 19 35 19 38 29 25 16 33 25 14 22 41 51 31 31 36 34 31 35 27 22 26 34 35 20 20 26 26 29 27 30 21 14 9 28 14 29 12 31 22 27 22 31 28 46 17 28 22 19 51 27 20 29 51 51 38 19 20 21 35 19 33 9 20 29 24 51 10 4 6 17 12 15 22 28 28 28 5 36 10 38 51 28 10 20 51 26 7 16 25 42 42 23 14 28 19 34 23 34 19 19 15 23 8 23 4 5 7 34 23 44 44 22 21 6 6 6 8 9 23 8 19 16 19 30 16 6 13 30 12 7 9 13 13 27 30 34 5 6 14 8 9	Open. Hide. 13 14 19 19 18 26 28 37 37 49 59 45 49 55 55 59 61 59 59 59 61 61 61 61 59 61 59 59 61 61 61 59 59 61 61 59 59 59 59 59 59 59 61 59 59 59 59 49 43 35 49 59 59 59 59 59 59 59 59 61 61 61 59 59 59 59 61 61 59 59 61 61 61 59 59 59 59 61 61 59 59 59 59 59 52 59 59 61 61 61 61 61 61 59 59 59 59 45 43 55 59 52 59 59 61 59 59 59 44 59 61 61 61 59 59 59 59 61 59 61 59 61 61 61 61 61 61 61 59 59 59 59 61 59 59 61 61 61 61 61 61 61 59 59 59 59 59 59 59 59 44 59 59 61 59 59 59 59 59 59 59 44 55 59 61 59 59 59 59 59 59 59 59 59 61 61 59 59 59 59 59 59 59 59 59 59 61 59 61 61 61 52 61 59 59 61 61 61 61 61 61 61 61 61 61 61 61 61 59 59 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 59 59 61 59 59 59 61 61 61 61 61 61 61 61 61 61 61 61 61 59 61 61 59 59 59 59 49 49 44 45 39 59 61 61 61 59 61 59 61 59 61 59 61 59 61 59 61 59 59 59 61 59 61 59 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 59 59 55 59 61 61 61 61 61 61 61 61 61 59 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 35 27 27 13 35 28 16 49 43 36 39 36 28 11 12 23 27 13 13 18 13 18 12 9 31 13 15 15 19 17 37 28 28 28 11 9 15 15 17 12 28 26 13 21 12 13 12 11 12 11 17 15 26 22 11 15 11 26 32 24 26 19 19 32 22 32 19 24 13 22 21 19 15 14 14 11 19 22 31 35 32 31 23 37 26 37 49 47 35 49 30 33 29 37 27 27 35 24 24 24 31 24 27 32 24 31 50 24 45 35 35 31 35 31 31 27 13 50 39 21 31 27 14 35 20 24

Alignment Information

BAC End 1

BAC End 2

seq1: chrX_118654643_118655702
seq2: B6Ng01-123M06.b_45_1099

seq1  GAATTCCATACAAATGCTCTTCAGCTAAATTAATATATAAAAGATAGGAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATACAAATGCTCTTCAGCTAAATTAATATATAAAAGATAGGAG  50

seq1  AACTTTATAAGGATAAAAATATTGCTTTCTGTTAGAAAAAGTTTATCCAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTTATAAGGATAAAAATATTGCTTTCTGTTAGAAAAAGTTTATCCAT  100

seq1  ATGCTATGACAATCAATATGATTGTCTCTTTACAATTTCAAAATGCATAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTATGACAATCAATATGATTGTCTCTTTACAATTTCAAAATGCATAG  150

seq1  ATTGTGACATTGAAAACTGGGTAAAGGAACTTGATGCAAATCCTGACAAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTGACATTGAAAACTGGGTAAAGGAACTTGATGCAAATCCTGACAAT  200

seq1  ATAAGTTAGGTCCCTGGAATCTACATAAGGTTGGAAGTAGATAATTTCTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGTTAGGTCCCTGGAATCTACATAAGGTTGGAAGTAGATAATTTCTA  250

seq1  GTAAAAGTATCCTTGGAACTATACACCATAACTATACCATATGCCACCCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAAAGTATCCTTGGAACTATACACCATAACTATACCATATGCCACCCC  300

seq1  ATAATAATAAGCTAAAAAAAAATTGAAACCTAAAATGTAGTAAAAACTAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATAATAAGCTAAAAAAAAATTGAAACCTAAAATGTAGTAAAAACTAC  350

seq1  AAATACCACAAGATCTAGCTATATTAATACACACCATGTAAGTGAATATC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATACCACAAGATCTAGCTATATTAATACACACCATGTAAGTGAATATC  400

seq1  TTTAAGATATTTTCACATAAGATTTACTTTTGCAGTCTTCATAACAGCTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAGATATTTTCACATAAGATTTACTTTTGCAGTCTTCATAACAGCTT  450

seq1  TGGAATGGAAAAGGCACACATAAACTGCTTAATGTATATGGAGCATTTGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAATGGAAAAGGCACACATAAACTGCTTAATGTATATGGAGCATTTGA  500

seq1  TTAAGTCATTAAAATAAAAGCACAAAATTTGCAAGACTCTCAGTCAAAAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGTCATTAAAATAAAAGCACAAAATTTGCAAGACTCTCAGTCAAAAC  550

seq1  TGTAAAATACAAATGCCACATGGTTTCTGCTATCTGTAAAATTTGGTTGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAAAATACAAATGCCACATGGTTTCTGCTATCTGTAAAATTTGGTTGA  600

seq1  TATTTGTATATATAATCCTGGATTATGGTATGTGTGTGTGTGATAAAAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTGTATATATAATCCTGGATTATGGTATGTGTGTGTGTGATAAAAAA  650

seq1  GAAAGTGTAATATGAGAGTAGGAAGAGATTTGTGGAAGAGAGGGCAATGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGTGTAATATGAGAGTAGGAAGAGATTTGTGGAAGAGAGGGCAATGG  700

seq1  GATATATGTCATAATTCCTCCTTTTCCTTTCTTTCTATCTCCTTCCCTAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATATATGTCATAATTCCTCCTTTTCCTTTCTTTCTATCTCCTTCCCTAT  750

seq1  TTAACATCTTTGTTCTAGTTTTACTTTAGTCTCTCCATAACAATATACTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAACATCTTTGTTCTAGTTTTACTTTAGTCTCTCCATAACAATATACTC  800

seq1  TATATGCCTTTCCTTGAGAGATCCTCCATCA-TTTTTTTTTTCTTTTAAG  849
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  TATATGCCTTTCCTTGAGAGATCCTCCATCATTTTTTTTTTTCTTTTAAG  850

seq1  AACTGTTCTCATCTTTATGAGTGTGGTCTCAAACTCACTGGGGGTAGAAA  899
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  AACTGTTCTCATCTTTATGAGTGTGGTCTCAAACTCACT-GGGGTAGAAA  899

seq1  CAAGGACATCATACATCCTAGCCAGAAATTCTACCTGATGAACTTCACCT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGACATCATACATCCTAGCCAGAAATTCTACCTGATGAACTTCACCT  949

seq1  GTAGCACTGTAGTTTCTTTTTTATTTGTACTTTTTAACACTTTAGAATTT  999
      |||||||||||||||| |||||||||||||  ||| ||||||||| ||||
seq2  GTAGCACTGTAGTTTC-TTTTTATTTGTAC--TTTGACACTTTAG-ATTT  995

seq1  TATTTACTTTTACACGATCTTGAGTTTATTTTCCATAAAAGTA-TTAGAA  1048
      |||||||||||||||||||||||| ||||||| ||| |||||| ||||||
seq2  TATTTACTTTTACACGATCTTGAG-TTATTTT-CATTAAAGTATTTAGAA  1043

seq1  TATATTTTACAT  1060
      ||||||||||||
seq2  TATATTTTACAT  1055

seq1: chr10_82765105_82765479
seq2: B6Ng01-123M06.g_349_535 (reverse)

seq1  GCTCTTCATCTGGGTGACATTAGAGTTGAGGTTATGGCTCAGCTTTTATT  50
                                                        
seq2  --------------------------------------------------  0

seq1  CCCAGGAACTCTTTGTCCCTGAGATGCAATGCACCAAATTATATTCCCAC  100
                                                        
seq2  --------------------------------------------------  0

seq1  AACCAGGTTCTCAATCTTGGGGCCTAGCTGAGCTAACACTAAAATGAGTG  150
            | |||  |||| ||             | ||||      |||| 
seq2  ------GCTCTTCATCTGGG-------------TGACACCTTGTGGAGT-  30

seq1  TATATTCCTGGTGCTCAAACTAGCTAAAG-AGTTACTCATGGCAGGTGAA  199
      | | | | |    |||||  |  | | ||  |||| |  ||  | |    
seq2  TTTCTCCATCCACCTCAACATGTCAAGAGCTGTTAGTATTGTTATG----  76

seq1  ATCTCTGACTTAAAAAGTTAGGGAAGAATAGATAAAGAGGCAGAAGAGAC  249
      |||| ||  |             | |  || ||||           ||||
seq2  ATCT-TGTAT-------------ACGTGTATATAA-----------AGAC  101

seq1  ACCTGAGACTAGTAAGAGTAATATATGTGTGTGTGTGTGTGTGTGTGTGT  299
      | || | ||           |||||  | | |                  
seq2  AACT-ATAC-----------ATATACATATCT------------------  121

seq1  GTGTGTGTGTGTGTGTGTGTGTGTATATATATATGTATATGTGTGTATAT  349
               | | | | | | | ||||||||||| ||||| | | |||||
seq2  ---------TCT-TATATATATATATATATATATATATATATATATATAT  161

seq1  ATATATGTATATATATGTATGTATAT  375
      ||| || ||||| |||||||||||||
seq2  ATACATATATATGTATGTATGTATAT  187

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BAC

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Alignment Information