BAC Information

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BAC

Clone NameB6Ng01-125A10
ChromosomeX (Build37)10 (Build37)
Map Location 6,577,075 - 6,577,63351,896,324 - 51,896,408
singlet/doubletsingletsinglet
Overlap geneCcnb3
Upstream geneNudt11, LOC208428, AU022751, Nudt10, Bmp15, Shroom4, LOC100043937, Dgkk
Downstream geneAkap4, Clcn5, Usp27x, 2010204K13Rik, LOC668973, Ppp1r3f, 4930524L23Rik, Foxp3, Ccdc22, Cacna1f, Syp, LOC632264, Lmo6, Plp2, Pdzx, Ppia-psx_14.1, Gpkow, LOC100043938, Wdr45, Praf2, Ccdc120, EG236622, Tcfe3, Gripap1, LOC100043939, Kcnd1, Otud5, Pim2, Slc35a2, Pqbp1, Timm17b, Pcsk1n, Eras, Hdac6, LOC668974, Gata1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-125A10.bB6Ng01-125A10.g
ACCDH927779DH927780
length959996
definitionDH927779|Mus musculus domesticus DNA, BAC clone: B6Ng01-125A10, 5' end.DH927780|Mus musculus domesticus DNA, BAC clone: B6Ng01-125A10, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(6,577,075 - 6,577,633)(51,896,324 - 51,896,408)
sequence
gaattcttaggcactgctgggttctgcagactttggaaacctgggtttgc
aacactggccaccctcctgtaccccttgaccaataaaagtggagaattca
gatggacatcagaacatcagaaagcctttgaaaatataatggaggccctg
ctgactgttccagccttggcactgccagatctaaccaaaccctgcatcct
ctatgttgatgagagggcatgggggccagaggagttcttactcaggctct
tgggccctggaagaggctggtagcatatttgtctaaggagctggacccag
ttgccaggagatggcccacatttttaaagtctgttgctgcagtagcacta
ctcatttaggatgctgacaaattaactctgggacagcaaataactgtgga
agcccctcactctcttgaaagcactatttgtcagcccccagacctctgga
ttgcaaatgcctggatgactcactaccagagtctgctcctgactgaaggg
gtcatgtttgctcctcttgctattctcaatcctgccacctttctgcctga
aacggacatctcctcacccggacactgctgtgcaaacattcttgcagagg
aaattgggattcaaagtgatctacgtgaccagccatggccaggtgttcca
agacagaagcagtttcctagtgtaaagtaagaggatggcaggggctgcac
tggtagatggtaagcgagatgtgtgggctggcggcctgcaggaaggtaag
tgagctcaaaaagctgaattaattgccctgactcatgccctttagattgc
tgaagggcagtccatcaatatttacacggatagcaggtatgtttttgcta
cagcccatgtccacgttgccatgtataggcaaagagggttgctgacgtca
gcacgcaaggacataaaaataaagaggagattctgagcctccttgaggct
attcatctg
gaattctcacctgaggaataccgaatggcagagaagcacttgaaaaaatg
ttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgagat
tccacctcacaccagtcagaatggctaagatcaaaaattcaggtgacagc
agatgctggcgaggatgtggagaaagaggaacactcctccattgttggtg
ggagtgcaggcttgtacaaccactctggaaatcagtctggcggttcctca
gaaaactggacatagtactaccggaggatccagcaatacctctcctgggc
atatatccagaagatgccccaacaggtaagaaggacacatgcaccactat
gttcatagcagccttatttataatagtcagaagctggaaagaacctagat
tcccctcaacagaggaatggatacaaaaaatgtggtacatctacacaatg
gagtactactcagctattaaaaagaatgaatttatgaaattcctagccaa
atggatggacctggagggcatcatcctgagtgaggtaacacattcacaaa
gaaactcacacaatatgtattcactgataagtggatattagccccaaacc
taggataccctagatataagatataatttgctaaacacatgaaactcaag
aagaatgaagactgaagtgtggacactatgcccctccttagatttgggaa
caaaacacccatggaaggagttacagagactgagtttggagctgagatga
aaggatggaccatgtagagactgccatatccagggatccaccccataatc
agcatccaaacgctgacaccattgcatacactagcaagattttattgaaa
ggacgcagatgtagctgtctcttgtgagactatgccggggcccagcaaac
acagaagtggatgctcacagtcagctaatggatggatcacaggctcccat
ggaggagctagagaagtagccaaggagctaaagggatctgcaccct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_6577075_6577633
seq2: B6Ng01-125A10.b_48_680 (reverse)

seq1  GCTGGTCACGTAGATCACTTTGCA--------------------------  24
      |||||||||||||||||||||| |                          
seq2  GCTGGTCACGTAGATCACTTTGAATCCCAATTTCCTCTGCAAGAATGTTT  50

seq1  -----------------------------------------------GGC  27
                                                     |||
seq2  GCACAGCAGTGTCCGGGTGAGGAGATGTCCGTTTCAGGCAGAAAGGTGGC  100

seq1  AGGGTTGAGAATAGCAGGAGAAGCAAACACGACCCGTTCAGTCAGCAGCA  77
      ||| |||||||||||| ||| |||||||| ||||| ||||||||| ||||
seq2  AGGATTGAGAATAGCAAGAGGAGCAAACATGACCCCTTCAGTCAGGAGCA  150

seq1  GACTCTGGTAGTGAGTCATCCAGGCATTTGTCATCCATCGGTCTGGGGGC  127
      ||||||||||||||||||||||||||||||  |||||  |||||||||||
seq2  GACTCTGGTAGTGAGTCATCCAGGCATTTGCAATCCAGAGGTCTGGGGGC  200

seq1  TGACAGATAATGCTTTTAAGAGAGTGGGGGGCTACCACAGTTATTTGCTG  177
      ||||| ||| |||||| ||||||||| |||||| ||||||||||||||||
seq2  TGACAAATAGTGCTTTCAAGAGAGTGAGGGGCTTCCACAGTTATTTGCTG  250

seq1  TCCCAGAGTTAATTTGTCAGCATCCTTAACGAGTAGGGCTACTGTAGCAA  227
      |||||||||||||||||||||||||| || |||||| ||||||| |||||
seq2  TCCCAGAGTTAATTTGTCAGCATCCTAAATGAGTAGTGCTACTGCAGCAA  300

seq1  CAGCCTTT--AAACGTGGGCCATCTGCTGGCCACTGGGTCCAGCTTCTTA  275
      ||| ||||  ||| ||||||||||| ||||| ||||||||||||| ||||
seq2  CAGACTTTAAAAATGTGGGCCATCTCCTGGCAACTGGGTCCAGCTCCTTA  350

seq1  GACAAATATGCCACCGGCCTCTTCCACGGCCCTAGAGCCTGAGTAAGAAC  325
      ||||||||||| ||| |||||||||| ||||| |||||||||||||||||
seq2  GACAAATATGCTACCAGCCTCTTCCAGGGCCCAAGAGCCTGAGTAAGAAC  400

seq1  TCCTCTGGCCACCCCCGCCCTCTCATCAACATAGAGGATGAAGGGCTTGG  375
      |||||||||| |||  |||||||||||||||||||||||| |||| ||||
seq2  TCCTCTGGCC-CCCATGCCCTCTCATCAACATAGAGGATGCAGGGTTTGG  449

seq1  TTAGATCTGGCAGTGCCAAGGCTGGCGCAGTCAGCAGGGCCTCCTTAATA  425
      |||||||||||||||||||||||||  ||||||||||||||||| | |||
seq2  TTAGATCTGGCAGTGCCAAGGCTGGAACAGTCAGCAGGGCCTCCATTATA  499

seq1  TTTTCAAAGGCTTTCTGATGTTCTGATGTCCATCTAAATTCTCCACTTTC  475
      ||||||||||||||||||||||||||||||||||| ||||||||||||| 
seq2  TTTTCAAAGGCTTTCTGATGTTCTGATGTCCATCTGAATTCTCCACTTTT  549

seq1  CTTGGTCAGGGGGTACAGGGGGGCGGCCAGTGTTGCAAACCCAGGTATCC  525
       ||||||| |||||||||| ||| |||||||||||||||||||||| |||
seq2  ATTGGTCAAGGGGTACAGGAGGGTGGCCAGTGTTGCAAACCCAGGTTTCC  599

seq1  AAAGTCTGCAGAACCCAGCGGTGCCCAAGAATTC  559
      ||||||||||||||||||| ||||| ||||||||
seq2  AAAGTCTGCAGAACCCAGCAGTGCCTAAGAATTC  633

seq1: chr10_51896324_51896408
seq2: B6Ng01-125A10.g_979_1060 (reverse)

seq1  TGCAGATCCCTTTAGCTCCTTGGGTATTTTCTCTAGCTCCTCCATTGAAG  50
      ||||||||||||||||||||||| ||  ||||||||||||||||| | ||
seq2  TGCAGATCCCTTTAGCTCCTTGGCTA-CTTCTCTAGCTCCTCCATGGGAG  49

seq1  GCCCTGTGATCCATCCAATAGCTGACTGTGAGCAT  85
        ||||||||||||||| |||||||||||||||||
seq2  --CCTGTGATCCATCCATTAGCTGACTGTGAGCAT  82