BAC Information

Click to search

BAC

Clone NameB6Ng01-126G23
Chromosome10 (Build37)
Map Location 20,765,058 - 20,952,033
singlet/doubletdoublet
Overlap geneAhi1, Myb
Upstream geneMap3k5, Mtap7, EG621697, Bclaf1, 2610016C23Rik, LOC382344, Pde7b, LOC667202
Downstream geneLOC100039870, Hbs1l, Aldh8a1, LOC100039906, 1700020N01Rik, EG432436, LOC100039936, LOC628133, Sgk, LOC667254, LOC665523, 4930444G20Rik, LOC100039992, E030030I06Rik, LOC665543, Ube2q2l, Raet1e, LOC100040023, LOC100038830
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-126G23.bB6Ng01-126G23.g
ACCDH928806DH928807
length1,179408
definitionDH928806|Mus musculus domesticus DNA, BAC clone: B6Ng01-126G23, 5' end.DH928807|Mus musculus domesticus DNA, BAC clone: B6Ng01-126G23, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(20,765,058 - 20,766,230)(20,951,620 - 20,952,033)
sequence
gaattcatagtatgtaaactgaggtgaccatgccctacaaaactcataaa
ctggggcctgtggctgatttcttcctgtacataattgcagggtggagagg
ggacatggaaactataagcttttataacttgttgtaaaaatcctgttttc
atttatcaatgaagtagcatttcaaagcagctctgctaaagttcctgttg
aaaatcaaatgcacatacataataggatctcttttaaaaccatgagtggc
tgttcataatgaccattttcattaagtatcctcattctctcctctgaaca
ctgtgaattataaagcctgtgtgaattttcccattgtcactttgctaaca
tttatggttttagaagatttctctcttctttgtgctttactaagtgtttt
tagtctatcaaacttattctagaattttcctgtctctggagcactgtaaa
gtaacagcagcatgaacctaattctaaagtagcagcagatgcagaggacc
tgggaaaatgacatagtaagcactgttcagatacccaaaagcaacaacca
agcatgcatgtctccataaactaggagcaaccaagcatgcgtgtctccat
aaactaggagcaaccaaccaagcatgcatgtcttcataaactaggagcat
acctttgactgtttcttacactcctaagaaaagtgacctgtatgcagcta
agtcagtattagatggccagccaggctcagagcaatcacgaaaggagccc
catggcaccatggcaccatggcagtgtgcacacaagtagagtacagaaca
ggcctgagtgctataagaattcccaggactgagtcatctggaaactctgg
ttagagtaagtatgtcctaaactggatcttataaggtggggatagagaat
tcaataagtaatagatgttgtagagcaaggaagcagtgcgagcagagatc
ataggaggagcacacacagtctggctgaaacagaagatcacaggaggagc
acacacagtctggctgaagcaaaggtcacaggaggagcacaacacagtct
ggctgagcaaaggttcacaggaggagcaaacacaagtctgactgaagcag
aggtcacaagggagggagcgcacagtctgactgaagcatggtctcaggaa
ggagcaaacacagtctgactgagcagagg
tacttaacgctaacaaacatcaactgttccctagaaagcagtggggttct
ctggagatgaatccactgacttctgcgctaccctcgggcactcaaactaa
atgaaatcctagaaatcttatcccagtgagcttggtgggctgaaccggga
gtgaccaggcattcattgcaacatgagcaatacattagagacctgcccca
aggaaaattactggagggactagagtatagcaaagaaaggcgtggataat
gaggaagggattccctgagcatgtgtctataaacagtatgccgcctcatc
gaacagtacaaggagaaagttaagggttcttagttatttttatttgtgtg
tgtatagtgtgtgcatatgcacatgtatgtatggcttctgcatgtgtacg
tgtgtgtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_20765058_20766230
seq2: B6Ng01-126G23.b_52_1230

seq1  GAATTCATAGTATGTAAACTGAGGTGACCATGCCCTACAAAACTCATAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATAGTATGTAAACTGAGGTGACCATGCCCTACAAAACTCATAAA  50

seq1  CTGGGGCCTGTGGCTGATTTCTTCCTGTACATAATTGCAGGGTGGAGAGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGGCCTGTGGCTGATTTCTTCCTGTACATAATTGCAGGGTGGAGAGG  100

seq1  GGACATGGAAACTATAAGCTTTTATAACTTGTTGTAAAAATCCTGTTTTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACATGGAAACTATAAGCTTTTATAACTTGTTGTAAAAATCCTGTTTTC  150

seq1  ATTTATCAATGAAGTAGCATTTCAAAGCAGCTCTGCTAAAGTTCCTGTTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTATCAATGAAGTAGCATTTCAAAGCAGCTCTGCTAAAGTTCCTGTTG  200

seq1  AAAATCAAATGCACATACATAATAGGATCTCTTTTAAAACCATGAGTGGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATCAAATGCACATACATAATAGGATCTCTTTTAAAACCATGAGTGGC  250

seq1  TGTTCATAATGACCATTTTCATTAAGTATCCTCATTCTCTCCTCTGAACA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCATAATGACCATTTTCATTAAGTATCCTCATTCTCTCCTCTGAACA  300

seq1  CTGTGAATTATAAAGCCTGTGTGAATTTTCCCATTGTCACTTTGCTAACA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGAATTATAAAGCCTGTGTGAATTTTCCCATTGTCACTTTGCTAACA  350

seq1  TTTATGGTTTTAGAAGATTTCTCTCTTCTTTGTGCTTTACTAAGTGTTTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATGGTTTTAGAAGATTTCTCTCTTCTTTGTGCTTTACTAAGTGTTTT  400

seq1  TAGTCTATCAAACTTATTCTAGAATTTTCCTGTCTCTGGAGCACTGTAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTCTATCAAACTTATTCTAGAATTTTCCTGTCTCTGGAGCACTGTAAA  450

seq1  GTAACAGCAGCATGAACCTAATTCTAAAGTAGCAGCAGATGCAGAGGACC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAACAGCAGCATGAACCTAATTCTAAAGTAGCAGCAGATGCAGAGGACC  500

seq1  TGGGAAAATGACATAGTAAGCACTGTTCAGATACCCAAAAGCAACAACCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGAAAATGACATAGTAAGCACTGTTCAGATACCCAAAAGCAACAACCA  550

seq1  AGCATGCATGTCTCCATAAACTAGGAGCAACCAAGCATGCGTGTCTCCAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATGCATGTCTCCATAAACTAGGAGCAACCAAGCATGCGTGTCTCCAT  600

seq1  AAACTAGGAGCAACCAACCAAGCATGCATGTCTTCATAAACTAGGAGCAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTAGGAGCAACCAACCAAGCATGCATGTCTTCATAAACTAGGAGCAT  650

seq1  ACCTTTGACTGTTTCTTACACTCCTAAGAAAAGTGACCTGTATGCAGCTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTTGACTGTTTCTTACACTCCTAAGAAAAGTGACCTGTATGCAGCTA  700

seq1  AGTCAGTATTAGATGGCCAGCCAGGCTCAGAGCAATCACGAAAGGAGCCC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCAGTATTAGATGGCCAGCCAGGCTCAGAGCAATCACGAAAGGAGCCC  750

seq1  CATGGCACCATGGCACCATGGCAGTGTGCACACAAGTAGAGTACAGAACA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGCACCATGGCACCATGGCAGTGTGCACACAAGTAGAGTACAGAACA  800

seq1  GGCCTGAGTGCTATAAGAATTCCCAGGACTGAGTCATCTGGAAACTCTGG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCTGAGTGCTATAAGAATTCCCAGGACTGAGTCATCTGGAAACTCTGG  850

seq1  TTAGAGTAAGTATGTCCTAAACTGGATCTTATAAGGTGGGGATAGAGAAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGAGTAAGTATGTCCTAAACTGGATCTTATAAGGTGGGGATAGAGAAT  900

seq1  TCAATAAGTAATAGATGTTGTAGAGCAAGGAAGCAGTGCGAGCAGAGATC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATAAGTAATAGATGTTGTAGAGCAAGGAAGCAGTGCGAGCAGAGATC  950

seq1  ATAGGAGGAGCACACACAGTCTGGCTGAAACAG-AGATCACAGGAGGAGC  999
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  ATAGGAGGAGCACACACAGTCTGGCTGAAACAGAAGATCACAGGAGGAGC  1000

seq1  ACACACAGTCTGGCTGAAGCAGAGGTCACAGGAGGAGCAC-ACACAGTCT  1048
      ||||||||||||||||||||| |||||||||||||||||| |||||||||
seq2  ACACACAGTCTGGCTGAAGCAAAGGTCACAGGAGGAGCACAACACAGTCT  1050

seq1  GGCTGAGCAGAGG-TCACAGGAGGAGCACACAC-AGTCTGACTGAAGCAG  1096
      ||||||||| ||| |||||||||||||| |||| ||||||||||||||||
seq2  GGCTGAGCAAAGGTTCACAGGAGGAGCAAACACAAGTCTGACTGAAGCAG  1100

seq1  AGGTCACA--GGA-GGAGCGCACAGTCTGACTGAAGCAGAGGTCACAGG-  1142
      ||||||||  ||| ||||||||||||||||||||||||  |||| |||| 
seq2  AGGTCACAAGGGAGGGAGCGCACAGTCTGACTGAAGCA-TGGTCTCAGGA  1149

seq1  AGGAGCAAACACAGTCTGACTGAAGCAGAGG  1173
      |||||||||||||||||||||| ||||||||
seq2  AGGAGCAAACACAGTCTGACTG-AGCAGAGG  1179

seq1: chr10_20951620_20952033
seq2: B6Ng01-126G23.g_65_478 (reverse)

seq1  CACACACACGTACACATGCAGAAGCCATACATACATGTGCATATGCACAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACACGTACACATGCAGAAGCCATACATACATGTGCATATGCACAC  50

seq1  ACTATACACACACAAATAAAAATAACTAAGAACCCTTAACTTTCTCCTTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTATACACACACAAATAAAAATAACTAAGAACCCTTAACTTTCTCCTTG  100

seq1  TACTGTTCGATGAGGCGGCATACTGTTTATAGACACATGCTCAGGGAATC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTGTTCGATGAGGCGGCATACTGTTTATAGACACATGCTCAGGGAATC  150

seq1  CCTTCCTCATTATCCACGCCTTTCTTTGCTATACTCTAGTCCCTCCAGTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCCTCATTATCCACGCCTTTCTTTGCTATACTCTAGTCCCTCCAGTA  200

seq1  ATTTTCCTTGGGGCAGGTCTCTAATGTATTGCTCATGTTGCAATGAATGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTCCTTGGGGCAGGTCTCTAATGTATTGCTCATGTTGCAATGAATGC  250

seq1  CTGGTCACTCCCGGTTCAGCCCACCAAGCTCACTGGGATAAGATTTCTAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTCACTCCCGGTTCAGCCCACCAAGCTCACTGGGATAAGATTTCTAG  300

seq1  GATTTCATTTAGTTTGAGTGCCCGAGGGTAGCGCAGAAGTCAGTGGATTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTCATTTAGTTTGAGTGCCCGAGGGTAGCGCAGAAGTCAGTGGATTC  350

seq1  ATCTCCAGAGAACCCCACTGCTTTCTAGGGAACAGTTGATGTTTGTTAGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCCAGAGAACCCCACTGCTTTCTAGGGAACAGTTGATGTTTGTTAGC  400

seq1  GTTAAGTAGAATTC  414
      ||||||||||||||
seq2  GTTAAGTAGAATTC  414