BAC Information

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BAC

Clone NameB6Ng01-126K13
Chromosome10 (Build37)
Map Location 30,407,357 - 30,408,371
singlet/doubletsinglet
Overlap geneNcoa7
Upstream geneRpl12, LOC623064, LOC674389, Gm232, LOC667696, LOC100040542, 2610036L11Rik, LOC212815, Trmt11, Hint3
Downstream geneLOC382354, Hey2, LOC654431, EG432448, Hddc2, Tpd52l1, LOC100041294, Ibrdc1, LOC666055, LOC667752, LOC100040638
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-126K13.bB6Ng01-126K13.g
ACCDH928968DH928969
length1,276997
definitionDH928968|Mus musculus domesticus DNA, BAC clone: B6Ng01-126K13, 5' end.DH928969|Mus musculus domesticus DNA, BAC clone: B6Ng01-126K13, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcttcatctgcttcagagctactaagagctggcttcctgagctcat
ctagtgacgagtatctcctagagacctccgctaatcgatcttttttcttt
tcttttttcttttccttccttctaatctctccccaggtattcttacctga
cctaaacttttcctcgggttcaagacccttggaaaggcctgtatacttat
tttgtgtaccatatttcctctttgttcctactctctctccccactttact
tctgatagcttgtcctgaatttcctctagaattttcagccctatcttaat
cacttgataacatgtgaaaaggaacaaaagggctcctaacaccagaaaaa
attcaaggccaaacatattccattttacttctgatagactgtcttgaatt
tccttagaaagttcaagaccagacttacctcgtaaagctatactcactgg
tactctcgttccccagctgaaaagttctgaattcatgcagttgaatcctt
cttaacagtctgctttacgggaacctttattaccgtgacccgcagttctg
gttctggaatgagggatcttccttgcaccggtgatggtaaactctcgtcc
cgagttttttctcgtcccggaattcggcaccaattgttattaaacgcgtt
ctcacgaccggccaggaaagacgcaacagaccagaatcttctgcggcaaa
gctttattgcttacatcttcaggagccagagtgcaagaagcaagagagag
agaaaacgaaaccccgtcccttttttaggagagttatatttcgcctagga
cgtgtcactccctgattggctgcagcccatcggccgagttgacgtcacgg
ggaaggcagagcacatggagtggagaaccaccctcggcatatgcgcagat
tatttgtttaccacttagaacacagctttcagcgccatcttgtaacggcg
atgtgggcgcggctccacacttttgaattccatttgcaacgtttagcttg
tcaccaagtcacctatatttggctgcatgtccttatcagaactcatcctg
cattggagtcccagcatttgttctctcatcacagtccaactggcggtagc
tctctttatgacagatgactgcttgtgtcacttttatggtggttttaagg
tacaactgcatgaaaataagcatcaataatgccatgattaagcacctatg
actgctttgctgagaagtgttctcaagagatagccggactgtggtgtctc
tccacaccacgtgagtaatcgctcgt
gaattcaacacatgacctatattaagaagtttgcaaaaccacttgaggaa
gaggtccaagaaaaatactgtttcagcattaaaagtatcttccaagttaa
agaatgacaggaaaaataatacacatgggattgctaaattattctccaag
agctctaggtatatgcagttccattcggaaaggaactcaatttccaaata
ctctattttttctcagaaaaaaactacacacacacacacacacacacaca
cacacacacacacacacacacacacacacatatatatacatgtgtgtata
tatgtaataagccaatctctcaatatttctccttctcctctcttcctcac
cagataagtctatacaacccacaaatgtagctaaaaaattcagtgctatt
tcttccttacctataaaatcatgaaggggccaaatcttttcagagatggc
tctatttacaatattctactcctgagagaacagagcttcagaaattaaca
tttcttctgatgaaccatttgtaagtaggaaacagtaggaaatggacatg
cacattcccaagagttccacttgaaaacttccatgagatcctggggttgc
atgcatggttagagggtgcatcacataaatacaaaacaaactatgtttat
tgcccttagtaatgtaagtttgtacctaagagaaaggggagatattagca
aacttattcagtaaaatcctattattttcacattaaactgtaatttatta
aaatgaggtgagtcttctggtaagaattaccaccataggcaataaccatc
tggaaggcaaggccttgctcagagtctcatttggctttgtgagattcatg
attcagaagtcataagtcttttttaatcaaacactgtccaatgatgatgc
tggtgactagtcagaaaagtgtgtgattcagagtaaattagtcctttcta
gtctttattctaagtcttttattcatcacatgtataaaaataaatca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_30407357_30408371
seq2: B6Ng01-126K13.g_68_1064

seq1  GAATTCAACACATGACCTATATTAAGAAGTTTGCAAAACCACTTGAGGAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAACACATGACCTATATTAAGAAGTTTGCAAAACCACTTGAGGAA  50

seq1  GAGGTCCAAGAAAAATACTGTTTCAGCATTAAAAGTATCTTCCAAGTTAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGTCCAAGAAAAATACTGTTTCAGCATTAAAAGTATCTTCCAAGTTAA  100

seq1  AGAATGACAGGAAAAATAATACACATGGGATTGCTAAATTATTCTCCAAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATGACAGGAAAAATAATACACATGGGATTGCTAAATTATTCTCCAAG  150

seq1  AGCTCTAGGTATATGCAGTTCCATTCGGAAAGGAACTCAATTTCCAAATA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCTAGGTATATGCAGTTCCATTCGGAAAGGAACTCAATTTCCAAATA  200

seq1  CTCTATTTTTTCTCAGAAAAAAACTACACACACACACACACACACACACA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTATTTTTTCTCAGAAAAAAACTACACACACACACACACACACACACA  250

seq1  CACACACACACACACACACACACACACACATATATATACATGTGTGTATA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACACACACACACACACACACACACATATATATACATGTGTGTATA  300

seq1  TATGTAATAAGCCAATCTCTCAATATTTCTCCTTCTCCTCTCTTCCTCAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTAATAAGCCAATCTCTCAATATTTCTCCTTCTCCTCTCTTCCTCAC  350

seq1  CAGATAAGTCTATACAACCCACAAATGTAGCTAAAAAATTCAGTGCTATT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATAAGTCTATACAACCCACAAATGTAGCTAAAAAATTCAGTGCTATT  400

seq1  TCTTCCTTACCTATAAAATCATGAAGGGGCCAAATCTTTTCAGAGATGGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCCTTACCTATAAAATCATGAAGGGGCCAAATCTTTTCAGAGATGGC  450

seq1  TCTATTTACAATATTCTACTCCTGAGAGAACAGAGCTTCAGAAATTAACA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATTTACAATATTCTACTCCTGAGAGAACAGAGCTTCAGAAATTAACA  500

seq1  TTTCTTCTGATGAACCATTTGTAAGTAGGAAACAGTAGGAAATGGACATG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTCTGATGAACCATTTGTAAGTAGGAAACAGTAGGAAATGGACATG  550

seq1  CACATTCCCAAGAGTTCCACTTGAAAACTTCCATGAGATCCTGGGGTTGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATTCCCAAGAGTTCCACTTGAAAACTTCCATGAGATCCTGGGGTTGC  600

seq1  ATGCATGGTTAGAGGGTGCATCACATAAATACAAAACAAACTATGTTTAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCATGGTTAGAGGGTGCATCACATAAATACAAAACAAACTATGTTTAT  650

seq1  TGCCCTTAGTAATGTAAGTTTGTACCTAAGAGAAAGGGGAGATATTAGCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCCTTAGTAATGTAAGTTTGTACCTAAGAGAAAGGGGAGATATTAGCA  700

seq1  AACTTATTCAGTAAAATCCTATTATTTTCACATTAAACTGTAATTTATTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTATTCAGTAAAATCCTATTATTTTCACATTAAACTGTAATTTATTA  750

seq1  AAATGAGGTGAGTCTTCTGGTAAGAATTACCACCATAGGCAATAACCATC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGAGGTGAGTCTTCTGGTAAGAATTACCACCATAGGCAATAACCATC  800

seq1  TGGAAGGCAAGGCCTTGCTCAGAGTCTCATTTGGCTTTGTGAGAATTCAT  850
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  TGGAAGGCAAGGCCTTGCTCAGAGTCTCATTTGGCTTTGTGAG-ATTCAT  849

seq1  GATTCAGAAGGTCAATAAGTTCTATTTATTAATCAAACACCTGTCCAAAT  900
      ||||||||| ||| |||||   | ||| ||||||||||| |||||| |||
seq2  GATTCAGAA-GTC-ATAAG---TCTTTTTTAATCAAACA-CTGTCC-AAT  892

seq1  GATGATGCTGGTGACTAGTCAGGAAAAGGTGTGTGGATTTCAGAGTTAAA  950
      ||||||||||||||||||||||  ||| |||||||   ||||||||  ||
seq2  GATGATGCTGGTGACTAGTCAG--AAAAGTGTGTG--ATTCAGAGT--AA  936

seq1  ATTAAGTCCTTTCTAAGTCTTTATTCTAAGTCTTTTTATTCCATCACATG  1000
      ||| |||||||||| ||||||||||||||||| ||||||| |||||||||
seq2  ATT-AGTCCTTTCT-AGTCTTTATTCTAAGTC-TTTTATT-CATCACATG  982

seq1  TATAAAAATAAATCA  1015
      |||||||||||||||
seq2  TATAAAAATAAATCA  997