BAC Information

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BAC

Clone NameB6Ng01-127O24
Chromosome10 (Build37)
Map Location 92,216,666 - 92,329,110
singlet/doubletdoublet
Overlap geneGm872
Upstream geneLOC100041799, LOC667203, LOC216229, LOC100041814, Nedd1
Downstream gene4930485B16Rik, EG667314, Pctk2, Elk3, LOC100041854, Lta4h, Hal, Amdhd1, Ccdc38, Snrpf, LOC100041873, Ntn4, LOC667338, LOC100041907, Usp44, Metap2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-127O24.bB6Ng01-127O24.g
ACCDH929921DH929922
length1,0821,038
definitionDH929921|Mus musculus domesticus DNA, BAC clone: B6Ng01-127O24, 5' end.DH929922|Mus musculus domesticus DNA, BAC clone: B6Ng01-127O24, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(92,328,043 - 92,329,110)(92,216,666 - 92,217,368)
sequence
gaattcccacctgatttccacaaatacacatgatggccatgaagttcata
ttaaaatgacttgctaaaggggaaaaattgctcaacaacaacaaataaaa
cttgtttgatttcctactcattagcataaattagcatccagaaaaagcca
cactaatctagctttaaacaattttagtattcatccacacatgagttgat
gagcaatattcatcgttttgtgtacacagcgcagtaccagatatttcttt
gcttctttcccttccttcccactcctttgctgttctattgatggaatcca
gagtcttaagcttgctaagtatttcaacaaggagctataccccaagtcca
gtgcaagaagcctgtgtccatcagagagagtcatggaacgaacacagcag
ggaggtaggttttctcttccatgagcttctggccacagcagttagaaaag
gcatacacattgaaaaaaaatacaaatccatattttagaaagccatatca
ctggaatcaggatgaatgtaccagaagctaaatgtatgtcttcttgtaga
aagttggggacaatcaggatggcataagaatcgctgggaatattattttc
tcctgggaatagtgagttataggacaggtgcaaatgaataccagacagaa
ggagaatccaatgttcttggcaaagcaattcaagacagaaacagctgcct
gcggaagatggactccagagttccttgccagaacctgagagaaaatcata
ggtattcataagacacaaaaaaaattcccggcagaatgcttggttccatt
tgtcaaatattctgcacattttcttgtggattcccaaaatgatgccctgg
tgggacaatgtttagaattcatcgtgaagaagtgttatagctgctaatat
tgcagctgtgttcaataaaccacagtcttctagcacttggagttagctaa
gtcttctagcttccacagtcttgtgggcttcaagtttaattcagcaagga
ttaaaaaaaaattatttaatcccataagaacacctttaaataaaagcacc
agttttggaatagtggtttcacatatgcagac
gaattcacgcagttgaatccttctcaacagtctgttttacgggaaccttc
attaccataacccgcagttctggttccggaatgagggatcttccttgcgc
cggtgatggttaactcccgtcccgagttttcttgtcccgggttttttcgt
cccgggttttctcgtcccgggttttctcgtcccgggtttcggcaccaact
cttgcacgctttctcacgaccggccaggaagaacacaacaaaccagaatc
ttctgcggcaaaactttattgcttacatcttcaggagcaagagtgcaaaa
ctcaaacccccaaaacgaaagcgaaaaccccgtccctatttaggagagtt
atccttcgcctaggacgtatcactccctgattggctgcagcccatggccg
agttgttgccacggggaaggcagagtacatggggtggagaaatacccttg
gcacatgcgcagattatttgtttaccacttagaacacagctgtcagcgcc
atcttgtgacggcgaatgtgagggcggctcccaacaactgtacagacaca
cataggcacacacactggcacatgcacataggcacataggtacatacata
agcacacagacagacatgcacaaaggcacacatatacacaggtatacaca
catactacacaggcacatgcacaaagcacacacacacacacacacacaca
agtacacacacacacacacacacactatacaagcacactttttaggcaca
caggtacatatacaggcacacacacacacaacacacacacacactttttg
tttagcagacactactaaaagtcctaaaagtcagtttgcattcttcaaaa
aaaacattttttccttcctctcccatcccaccatttgtgtcaaagagaac
ttgtggccaaaattgcatatcatataaagaagcccccgttttaatctata
attatggaaacccaattatactggggccattgtgttatatatgtgacctg
cacttggcgaaactcaaagagcttgcccagaatttaat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_92328043_92329110
seq2: B6Ng01-127O24.b_35_1116 (reverse)

seq1  GTCTGC--ATCTGGAACCACTAATCCAAAA-TGGTGCTTTTTATTTAAA-  46
      ||||||  || || |||||||| ||||||| |||||| ||||||||||| 
seq2  GTCTGCATATGTGAAACCACTATTCCAAAACTGGTGC-TTTTATTTAAAG  49

seq1  GTG-TCTTATAGGATTTAATAATTTTTTTT--ATCCCTGCTGAATT-AAC  92
      ||| |||||| ||||| |||||||||||||  |||| ||||||||| |||
seq2  GTGTTCTTATGGGATTAAATAATTTTTTTTTAATCCTTGCTGAATTAAAC  99

seq1  ATGAAGGCCACAAGACTGTGG-AGCTAGAAGACTAGGCTAACTTCAAG-G  140
       ||||| |||||||||||||| ||||||||||||  ||||||| |||| |
seq2  TTGAAGCCCACAAGACTGTGGAAGCTAGAAGACTTAGCTAACTCCAAGTG  149

seq1  CTAGAAGACTGTGTCTATTTGAACACAGCTGCAATATTGGCAGCTAATAC  190
      |||||||||||||  |  |||||||||||||||||||| |||||||  ||
seq2  CTAGAAGACTGTGGTTTATTGAACACAGCTGCAATATTAGCAGCTATAAC  199

seq1  ACATCTTCACGATGAA-TCTAAACATTGTCCCACCAGGGCCATCATTTTG  239
      || ||||||||||||| |||||||||||||||||||||| ||||||||||
seq2  ACTTCTTCACGATGAATTCTAAACATTGTCCCACCAGGG-CATCATTTTG  248

seq1  GG-ATCCACAAGAAAATGTGCAGAATATTTGACAAATGGAACCAAGCATT  288
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAATCCACAAGAAAATGTGCAGAATATTTGACAAATGGAACCAAGCATT  298

seq1  CTGCCGG--AATTTTTTTGTGTCTTATGAATACCTATGA-TTTCTCTCAG  335
      |||||||  | |||||||||||||||||||||||||||| ||||||||||
seq2  CTGCCGGGAATTTTTTTTGTGTCTTATGAATACCTATGATTTTCTCTCAG  348

seq1  GTTCTGGCAAGGAACTCTGGAGTCCATCTTCCGCAGGCAGCTGTTTCTGT  385
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTGGCAAGGAACTCTGGAGTCCATCTTCCGCAGGCAGCTGTTTCTGT  398

seq1  CTTGAATTGCTTTGCCAAGAACATTGGATTCTCCTTCTGTCTGGTATTCA  435
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGAATTGCTTTGCCAAGAACATTGGATTCTCCTTCTGTCTGGTATTCA  448

seq1  TTTGCACCTGTCCTATAACTCACTATTCCCAGGAGAAAATAATATTCCCA  485
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCACCTGTCCTATAACTCACTATTCCCAGGAGAAAATAATATTCCCA  498

seq1  GCGATTCTTATGCCATCCTGATTGTCCCCAACTTTCTACAAGAAGACATA  535
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGATTCTTATGCCATCCTGATTGTCCCCAACTTTCTACAAGAAGACATA  548

seq1  CATTTAGCTTCTGGTACATTCATCCTGATTCCAGTGATATGGCTTTCTAA  585
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTAGCTTCTGGTACATTCATCCTGATTCCAGTGATATGGCTTTCTAA  598

seq1  AATATGGATTTGTATTTTTTTTCAATGTGTATGCCTTTTCTAACTGCTGT  635
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATGGATTTGTATTTTTTTTCAATGTGTATGCCTTTTCTAACTGCTGT  648

seq1  GGCCAGAAGCTCATGGAAGAGAAAACCTACCTCCCTGCTGTGTTCGTTCC  685
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCAGAAGCTCATGGAAGAGAAAACCTACCTCCCTGCTGTGTTCGTTCC  698

seq1  ATGACTCTCTCTGATGGACACAGGCTTCTTGCACTGGACTTGGGGTATAG  735
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGACTCTCTCTGATGGACACAGGCTTCTTGCACTGGACTTGGGGTATAG  748

seq1  CTCCTTGTTGAAATACTTAGCAAGCTTAAGACTCTGGATTCCATCAATAG  785
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTTGTTGAAATACTTAGCAAGCTTAAGACTCTGGATTCCATCAATAG  798

seq1  AACAGCAAAGGAGTGGGAAGGAAGGGAAAGAAGCAAAGAAATATCTGGTA  835
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGCAAAGGAGTGGGAAGGAAGGGAAAGAAGCAAAGAAATATCTGGTA  848

seq1  CTGCGCTGTGTACACAAAACGATGAATATTGCTCATCAACTCATGTGTGG  885
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCGCTGTGTACACAAAACGATGAATATTGCTCATCAACTCATGTGTGG  898

seq1  ATGAATACTAAAATTGTTTAAAGCTAGATTAGTGTGGCTTTTTCTGGATG  935
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAATACTAAAATTGTTTAAAGCTAGATTAGTGTGGCTTTTTCTGGATG  948

seq1  CTAATTTATGCTAATGAGTAGGAAATCAAACAAGTTTTATTTGTTGTTGT  985
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAATTTATGCTAATGAGTAGGAAATCAAACAAGTTTTATTTGTTGTTGT  998

seq1  TGAGCAATTTTTCCCCTTTAGCAAGTCATTTTAATATGAACTTCATGGCC  1035
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCAATTTTTCCCCTTTAGCAAGTCATTTTAATATGAACTTCATGGCC  1048

seq1  ATC-TGTGTATTTGTGGAAATCAGGTGGGAATTC  1068
      ||| ||||||||||||||||||||||||||||||
seq2  ATCATGTGTATTTGTGGAAATCAGGTGGGAATTC  1082

seq1: chr10_92216666_92217368
seq2: B6Ng01-127O24.g_374_1106

seq1  ACCCCCAAAACGAAAGCGAAAACCCCGTCCCTATTTAGGAGAGTTATCCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCCCAAAACGAAAGCGAAAACCCCGTCCCTATTTAGGAGAGTTATCCT  50

seq1  TCGCCTAGGACGTATCACTCCCTGATTGGCTGCAGCCCATGGCCGAGTTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGCCTAGGACGTATCACTCCCTGATTGGCTGCAGCCCATGGCCGAGTTG  100

seq1  TTGCCACGGGGAAGGCAGAGTACATGGGGTGGAGAAATACCCTTGGCACA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCCACGGGGAAGGCAGAGTACATGGGGTGGAGAAATACCCTTGGCACA  150

seq1  TGCGCAGATTATTTGTTTACCACTTAGAACACAGCTGTCAGCGCCATCTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCGCAGATTATTTGTTTACCACTTAGAACACAGCTGTCAGCGCCATCTT  200

seq1  GTGACGGCGAATGTGAGGGCGGCTCCCAACAACTGTACAGACACACATAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGACGGCGAATGTGAGGGCGGCTCCCAACAACTGTACAGACACACATAG  250

seq1  GCACACACACTGGCACATGCACATAGGCACATAGGTACATACATAAGCAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACACACACTGGCACATGCACATAGGCACATAGGTACATACATAAGCAC  300

seq1  ACAGACAGACATGCACAAAGGCACACATATACACAGGTATACACACATAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGACAGACATGCACAAAGGCACACATATACACAGGTATACACACATAC  350

seq1  TACACAGGCACATGCAC-AAGCACACACACACACACACACACACAAGTAC  399
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  TACACAGGCACATGCACAAAGCACACACACACACACACACACACAAGTAC  400

seq1  ACACACACACACACACACACTATACAAGCACAC-TCTTAGGCACACAGGT  448
      ||||||||||||||||||||||||||||||||| | ||||||||||||||
seq2  ACACACACACACACACACACTATACAAGCACACTTTTTAGGCACACAGGT  450

seq1  ACATATACAGGCACACACACACAC-ACACACACACACACTTTT--GTTAG  495
      |||||||||||||||||||||||| ||||||||||||||||||   ||||
seq2  ACATATACAGGCACACACACACACAACACACACACACACTTTTTGTTTAG  500

seq1  CAGACACTACT-AAAGTCCT-AAAGTCAGTTTGCA-TCTTC-AGAAACAC  541
      ||||||||||| |||||||| |||||||||||||| ||||| | ||| ||
seq2  CAGACACTACTAAAAGTCCTAAAAGTCAGTTTGCATTCTTCAAAAAAAAC  550

seq1  ATTTT---CCTCCTCT-CCATCCCAC---ATCTGTCAAA-TGAAC-TGT-  581
      |||||   | |||||| |||||||||    | |||||||  |||| ||| 
seq2  ATTTTTTCCTTCCTCTCCCATCCCACCATTTGTGTCAAAGAGAACTTGTG  600

seq1  GCCAGAA-TGCAT-TCA-ATAAAGA--GCCCCGTTTTAATCATTAATTAT  626
      |||| || ||||| ||| |||||||   |||||||||||||  |||||||
seq2  GCCAAAATTGCATATCATATAAAGAAGCCCCCGTTTTAATCTATAATTAT  650

seq1  -GATACC--AATATACTGGGTGCATTGTGTTATA-ATGTGACTCGCACTT  672
       || |||  | |||||||||  |||||||||||| |||||||  ||||||
seq2  GGAAACCCAATTATACTGGGGCCATTGTGTTATATATGTGACCTGCACTT  700

seq1  -GCAGACTTCAAAGAGCTTGCCCAG-ATTTAAT  703
       ||  |  ||||||||||||||||| |||||||
seq2  GGCGAAACTCAAAGAGCTTGCCCAGAATTTAAT  733