BAC Information

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BAC

Clone NameB6Ng01-130D01
Chromosome10 (Build37)
Map Location 64,426,786 - 64,427,970
singlet/doubletsinglet
Overlap geneCtnna3
Upstream geneLrrtm3
Downstream geneLOC665206, LOC216036
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-130D01.bB6Ng01-130D01.g
ACCDH931567DH931568
length1,1731,187
definitionDH931567|Mus musculus domesticus DNA, BAC clone: B6Ng01-130D01, 5' end.DH931568|Mus musculus domesticus DNA, BAC clone: B6Ng01-130D01, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattctaggagagccagggcttcaccgagaaaccctatcaggacaagcc
gataactaactaatgagctttcttacttgcctgccataaaagtaacataa
aaatacacgtgagtgtgtggcattagtgtaaagcaatgcaatacaccatg
gattagcaacgtccacagatatacatcgttgaacaggcaaggagaaaact
aagtcctccaatatgcagcgtgaagaggaggaagctacagaagttgcctg
atccaaacttggaccttgactattcagtgtcaatcagatgtgctcttttg
gaggaggaacaaaagaggataggggcagaggagataataagacaagagag
gctagcagagtagtttcagtgaagctagtgttgctcataatactggtatg
tatgttgtggagtaggggtaaacaacttcatttcagagataattggcttt
aagtttgagagggacacacagagctctgtgcatttggaagttaactatgc
aatagataaaacaaaacaaaacaaaacaaaacaccaaacaaacaaacaaa
aaaccagggggtcaggaggaaaaccactgggttgtaagggcttgtcttaa
taggattcagagggatgaagtgagcaagcctctatttgtgaaatctcagc
aagcacatgaagtatgaggtcaatatgctatcatatgttaagggtgaaat
tgaggtaagactttaattttctgggcaacacaaaatgctacacatggaag
gggcatcatgtctagaagagtaagcagacatgcttaattattcattgaag
ttaggtgacaatgtgacatctgaaagggagaaaggtccagtggaacctgg
gcatgcaatacagtggtggcttttatggaagaagagtcttgagaagcaag
ttgagccactaattaaatgaatgctggagaaggatttgaagaaactgccg
agataggattttttttttctatagtgtagttcagagagacctttcacagt
atgcaggtttatttgaaccaaatgggaggtagtgcctcccagagattctt
gagagagtcatcaggagtcaggctcttttgctcttccacttgtatctctg
gccctggttgcattattaccttagtctcatcccaacccgaaaatgtcagt
tccaatgatgaagtgaacacaca
gaattccaaccaaatataattaaaagagatagggaagcatacttcatact
catcaaagtaaatgtccattaagatgacatttcagtcctgaacatctatg
ccccaaacacaatggcactcacatttgtaaaaaaacaacaacaaaaaaaa
aaaacaaaaaaaaaacaacaacaacaaaaacaacaacaacaacaacaaca
aattactaagtcttaaatcacacatgtaaattccattttaatagtgagag
acttcagcaccctactctcaccaatggacaagtcatctagacagaaacta
aacaaagaaataatggaagtaacaggtattatgactgaaatggacctacc
agatatctacagaacatttcacccaaacacaaaagaatacaacttcttag
cacctcatggaaccttctccaagattgaccttaaactcagtcacaatgca
agtatcaacagatacaagaaaatagaaataatcccccatattccacagac
taaaactgggttcaacaacatgaaaaaagtatagaaagcccacaaactca
ttgaaactgaacactttctactcaataacctctggaagaaataagaaata
agacttcctagaatgcataggcgatatgcctaggcttatgagaaaccgtg
aaagcattgattagggaaatgttcataacactaagtaccttcaaaaagaa
attggaaagatctcaaactagctatttaacaacatgcctaaaatctgtag
actaaaaagaagtgaacacacccaaaatgagtagatgtcaggaaataatc
aaactcaaggctaattcaacaaatagaaatacaaagcatacaaagaatca
taaacgaagagttggtctttgagaaaattagtaagatagacaaatcctta
tccaaacaactaaagtcagagagagaattttcaaaataaatgaagtcaga
actgaaatggggccatactaacatcataaacatgaaatcatacttcaaaa
ttatacaccacaaaactttaacttctaaagaatgacaaatcactagcatg
acaaatcctagcagtattcagacaataatataatagacttaaccccagaa
tgagcagtcataagtctccttaagaacaacaagccaaaccaacacaacga
acgaactttttatatgagattcttcctacaacttcgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_64426786_64427970
seq2: B6Ng01-130D01.b_45_1217

seq1  GAATTCTAGGAGAGCCAGGGCTTCACCGAGAAACCCTATCAGGACAAGCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTAGGAGAGCCAGGGCTTCACCGAGAAACCCTATCAGGACAAGCC  50

seq1  GATAACTAACTAATGAGCTTTCTTACTTGCCTGCCATAAAAGTAACATAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAACTAACTAATGAGCTTTCTTACTTGCCTGCCATAAAAGTAACATAA  100

seq1  AAATACACGTGAGTGTGTGGCATTAGTGTAAAGCAATGCAATACACCATG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATACACGTGAGTGTGTGGCATTAGTGTAAAGCAATGCAATACACCATG  150

seq1  GATTAGCAACGTCCACAGATATACATCGTTGAACAGGCAAGGAGAAAACT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTAGCAACGTCCACAGATATACATCGTTGAACAGGCAAGGAGAAAACT  200

seq1  AAGTCCTCCAATATGCAGCGTGAAGAGGAGGAAGCTACAGAAGTTGCCTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTCCTCCAATATGCAGCGTGAAGAGGAGGAAGCTACAGAAGTTGCCTG  250

seq1  ATCCAAACTTGGACCTTGACTATTCAGTGTCAATCAGATGTGCTCTTTTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCAAACTTGGACCTTGACTATTCAGTGTCAATCAGATGTGCTCTTTTG  300

seq1  GAGGAGGAACAAAAGAGGATAGGGGCAGAGGAGATAATAAGACAAGAGAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGAGGAACAAAAGAGGATAGGGGCAGAGGAGATAATAAGACAAGAGAG  350

seq1  GCTAGCAGAGTAGTTTCAGTGAAGCTAGTGTTGCTCATAATACTGGTATG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAGCAGAGTAGTTTCAGTGAAGCTAGTGTTGCTCATAATACTGGTATG  400

seq1  TATGTTGTGGAGTAGGGGTAAACAACTTCATTTCAGAGATAATTGGCTTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTTGTGGAGTAGGGGTAAACAACTTCATTTCAGAGATAATTGGCTTT  450

seq1  AAGTTTGAGAGGGACACACAGAGCTCTGTGCATTTGGAAGTTAACTATGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTTGAGAGGGACACACAGAGCTCTGTGCATTTGGAAGTTAACTATGC  500

seq1  AATAGATAAAACAAAACAAAACAAAACAAAACACCAAACAAACAAACAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGATAAAACAAAACAAAACAAAACAAAACACCAAACAAACAAACAAA  550

seq1  AAACCAGGGGGTCAGGAGGAAAACCACTGGGTTGTAAGGGCTTGTCTTAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCAGGGGGTCAGGAGGAAAACCACTGGGTTGTAAGGGCTTGTCTTAA  600

seq1  TAGGATTCAGAGGGATGAAGTGAGCAAGCCTCTATTTGTGAAATCTCAGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGATTCAGAGGGATGAAGTGAGCAAGCCTCTATTTGTGAAATCTCAGC  650

seq1  AAGCACATGAAGTATGAGGTCAATATGCTATCATATGTTAAGGGTGAAAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCACATGAAGTATGAGGTCAATATGCTATCATATGTTAAGGGTGAAAT  700

seq1  TGAGGTAAGACTTTAATTTTCTGGGCAACACAAAATGCTACACATGGAAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGTAAGACTTTAATTTTCTGGGCAACACAAAATGCTACACATGGAAG  750

seq1  GGGCATCATGTCTAGAAGAGTAAGCAGACATGCTTAATTATTCATTGAAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCATCATGTCTAGAAGAGTAAGCAGACATGCTTAATTATTCATTGAAG  800

seq1  TTAGGTGACAATGTGACATCTG-AAGGGAGAAAGGTCCAGTGGAACCTGG  849
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  TTAGGTGACAATGTGACATCTGAAAGGGAGAAAGGTCCAGTGGAACCTGG  850

seq1  GCATGCAATACAGTGGTGGCTTTTATGGAAGAAGAGTCTTGAGAAGCAAG  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATGCAATACAGTGGTGGCTTTTATGGAAGAAGAGTCTTGAGAAGCAAG  900

seq1  TTGAGCCACTAATTAAATGAATGCTGGAGAAGGATTTGAAGAAACTGCCG  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGCCACTAATTAAATGAATGCTGGAGAAGGATTTGAAGAAACTGCCG  950

seq1  AGATAGGATTTTTTTTTTCTATAGTGTAGTTCAGAGAGACCTTTCACAGT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATAGGATTTTTTTTTTCTATAGTGTAGTTCAGAGAGACCTTTCACAGT  1000

seq1  ATGCAGGTTTATTTGAAACCAAATTGGGAGGTAGTGCCTCCCAGAGATTC  1049
      ||||||||||||||| ||||||| ||||||||||||||||||||||||||
seq2  ATGCAGGTTTATTTG-AACCAAA-TGGGAGGTAGTGCCTCCCAGAGATTC  1048

seq1  -TGAGAGAGTCATCAGGAAGTCAGGCTCTTTTGCTCCTTCCACTTTGTAT  1098
       |||||||||||||||| ||||||||||||||||| ||||||| ||||||
seq2  TTGAGAGAGTCATCAGG-AGTCAGGCTCTTTTGCT-CTTCCAC-TTGTAT  1095

seq1  CTCTGGCTCTGGTTGCATTATTACCTAAGTCCTCCATCCCCACCCCCAAA  1148
      ||||||| |||||||||||||||||| ||||   |||||| ||||    |
seq2  CTCTGGCCCTGGTTGCATTATTACCTTAGTC--TCATCCCAACCC---GA  1140

seq1  AAATGTTCAGTCACAATGAATGAAAGTGAAGCACACA  1185
      ||||| |||||  ||||| ||| ||||||| ||||||
seq2  AAATG-TCAGTTCCAATG-ATG-AAGTGAA-CACACA  1173