BAC Information

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BAC

Clone NameB6Ng01-132O18
Chromosome10 (Build37)16 (Build37)
Map Location 104,053,903 - 104,054,36382,536,121 - 82,537,262
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneEG627488, EG667692, EG667695, LOC100043292
Downstream geneLOC100042383, Tmtc2, EG627573
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-132O18.bB6Ng01-132O18.g
ACCDH933605DH933606
length1,0021,099
definitionDH933605|Mus musculus domesticus DNA, BAC clone: B6Ng01-132O18, 5' end.DH933606|Mus musculus domesticus DNA, BAC clone: B6Ng01-132O18, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(104,053,903 - 104,054,363)(82,536,121 - 82,537,262)
sequence
gaattctcacctgaggaatactgaatggctgagaagcacctgaaaaaatg
ttcaacatccttaatcatcagggaaatgcaaatcaaaacaactctgagat
tccacctcacaccagtcagaatggctaagatcaaaaattcaggtgacagc
agatgctggtgaggatgttgagaaagaggaacactcctccattgttggtg
ggattgcaagctgtacaaccactctggaaatcggtctggcggttcttcag
aaaagtggacatagtactaccggaggatcccgcaatacctctcctgggca
tatatccagaagatgttccaacccgtaagaaggacacatgctccactatg
ttcatagcagccttatttataatagccagaagctggaaagaacccagctg
cccctcaacagaagaatggatatagaaaatgtggtacatctacacaatgg
agtactactcagctattaaaaagaatgaatttatgaaattcctttataca
atggagtattactcagctattaaaaagaatgaatttatgaaattcctagg
caaatgaatggacctggagggcatcgtactgagtgaggtaacccaaatac
aaaagaactcacacaatatgtactcactgataagtggctattagcccaga
aacttagtatacccaagatataaagtacaatttgtgaaacacatgaaact
caagaagaacgaagaccaaagtgtggacactttgccccttcttagaattg
ggaacaaaacacccatggaaaggtgtaggcaggctgcacccaaaaaaaaa
aaaaaaaaaaaaatggagccggtctctggtacacagtcgccataaacacc
accactgtgcaggtgctagccagaatctggagccaaacacacccgagcgg
gttcatgcaaattaaggtgccagcagactgaccaatcccaggaggacaca
tagccctccccagtgctggggtgtatataagcagtcatctctgggtgccc
gg
gaattcaaaggatgtacattcctggaaaactttaaagtgggaagggttac
aaaagagaaaaagaaaaagcaaatcactttgtaggtgaataaccacaatg
aaagcttttcataaagataagcagttacctgtttacactatgctaggtat
actctaccttagaatgaactgtactggtgggatatttgcagcaagctttg
aatctttttgcaactccatgtgtctaatagagacagaagctatctatggc
tttcctgttcgatgaaggaaatggcaggtattaactgcattccctcttga
ccctggaggttcaaagcagaacattaaagtcttggaacttgtcacaaatg
atagattttacaaaaatggctccatggcattattccatgatgagactctt
agtaattcacaggaaataagtatggactatagatagggctatatggtata
gtaatccctcacccatgtttctatcctcactatggctcatttgctgagat
aactgttttaataggtaaagtggttttatgtttcattatactatgataat
ttcccccttagtggaacactgcacaatgggtaagtatatttcacacatgt
gatagaggactaaaatccaaaatatataaagagctcaaattgctagatac
ccagaaacaaaagtaacctaattttgttggtgaggatgtggagtaagagg
aacactatccactttctataagatggttttattaaagaaaagggaaaaag
gcagacaggcagacagacagacaggaagaaagaaagaagaagaaagaaga
aagaagaaagaagaagaagaagaagaagaagaagaagaaggaagggagga
aggagaaggagaagaagaacagtaagcttagcaaacagttggagagcagt
agacacagctcttgagcaatttgaacaagtgacatgggtaggcaaaggca
cacacaaagcagtattttttttctgatatagctatagctgtttatcagta
ggctttattataatgagaatgattgtcacacaaagactcctaaattccaa
ggtgctcaataaggacgggcctatgcatgttggctgatgatcaacatac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_104053903_104054363
seq2: B6Ng01-132O18.b_51_520 (reverse)

seq1  TTTAATAG----------CTCCATTGTGTAAATGTACCACATTTTCTGTA  40
      ||||||||          |||||||||||| |||||||||||||||| ||
seq2  TTTAATAGCTGAGTAGTACTCCATTGTGTAGATGTACCACATTTTCTATA  50

seq1  TCTATTCCTCTGTTGAGGGGCATCTGGGTTCTTTCCAGCTCCTGGCTATT  90
      || |||| |||||||||||||| ||||||||||||||||| |||||||||
seq2  TCCATTCTTCTGTTGAGGGGCAGCTGGGTTCTTTCCAGCTTCTGGCTATT  100

seq1  ATAAATAAGGCTGCTATGAATATAGTGGAGCATGTGTCCTTCTTACCGGT  140
      |||||||||||||||||||| ||||||||||||||||||||||||| |||
seq2  ATAAATAAGGCTGCTATGAACATAGTGGAGCATGTGTCCTTCTTACGGGT  150

seq1  TGGGGCATCTTCTGGATATATGCCCAGAAGAGGTATTGCTGGATCCTCCG  190
      |||  |||||||||||||||||||||| ||||||||||| ||||||||||
seq2  TGGAACATCTTCTGGATATATGCCCAGGAGAGGTATTGCGGGATCCTCCG  200

seq1  GTAGTACTATGTCCAATTTTCTGACGAACCGCCAGACGGATTTCCAGAGT  240
      ||||||||||||||| |||||||| |||||||||||| ||||||||||||
seq2  GTAGTACTATGTCCACTTTTCTGAAGAACCGCCAGACCGATTTCCAGAGT  250

seq1  GGTTGTACAAGCCTGCAATCCCACCAACAATGGAGGAGTGTTCCTCTTTC  290
      |||||||| ||| |||||||||||||||||||||||||||||||||||||
seq2  GGTTGTAC-AGCTTGCAATCCCACCAACAATGGAGGAGTGTTCCTCTTTC  299

seq1  TCCACATCCTCGCCAGCATCTGCTGTCACCTGAATTTTTGATCTTAGCCA  340
      || |||||||| ||||||||||||||||||||||||||||||||||||||
seq2  TCAACATCCTCACCAGCATCTGCTGTCACCTGAATTTTTGATCTTAGCCA  349

seq1  TTCTGACTGGTGTGAGGTGGAATCTCAGGGTTGTTTTGATTTGCATTTCC  390
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  TTCTGACTGGTGTGAGGTGGAATCTCAGAGTTGTTTTGATTTGCATTTCC  399

seq1  CTGATGATTAAGGATGTTGAACATTTTTTCAGGTGCTTCTCTGCCATTCG  440
      ||||||||||||||||||||||||||||||||||||||||| ||||||| 
seq2  CTGATGATTAAGGATGTTGAACATTTTTTCAGGTGCTTCTCAGCCATTCA  449

seq1  GTATTCCTCAGGTGAGAATTC  461
      |||||||||||||||||||||
seq2  GTATTCCTCAGGTGAGAATTC  470

seq1: chr16_82536121_82537262
seq2: B6Ng01-132O18.g_67_1165

seq1  GAATTCAAAGGATGTACATTCCTGGAAAACTTTAAAGTGGGAAGGGTTAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAAGGATGTACATTCCTGGAAAACTTTAAAGTGGGAAGGGTTAC  50

seq1  AAAAGAGAAAAAGAAAAAGCAAATCACTTTGTAGGTGAATAACCACAATG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGAGAAAAAGAAAAAGCAAATCACTTTGTAGGTGAATAACCACAATG  100

seq1  AAAGCTTTTCATAAAGATAAGCAGTTACCTGTTTACACTATGCTAGGTAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCTTTTCATAAAGATAAGCAGTTACCTGTTTACACTATGCTAGGTAT  150

seq1  ACTCTACCTTAGAATGAACTGTACTGGTGGGATATTTGCAGCAAGCTTTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTACCTTAGAATGAACTGTACTGGTGGGATATTTGCAGCAAGCTTTG  200

seq1  AATCTTTTTGCAACTCCATGTGTCTAATAGAGACAGAAGCTATCTATGGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTTTTTGCAACTCCATGTGTCTAATAGAGACAGAAGCTATCTATGGC  250

seq1  TTTCCTGTTCGATGAAGGAAATGGCAGGTATTAACTGCATTCCCTCTTGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCTGTTCGATGAAGGAAATGGCAGGTATTAACTGCATTCCCTCTTGA  300

seq1  CCCTGGAGGTTCAAAGCAGAACATTAAAGTCTTGGAACTTGTCACAAATG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGGAGGTTCAAAGCAGAACATTAAAGTCTTGGAACTTGTCACAAATG  350

seq1  ATAGATTTTACAAAAATGGCTCCATGGCATTATTCCATGATGAGACTCTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGATTTTACAAAAATGGCTCCATGGCATTATTCCATGATGAGACTCTT  400

seq1  AGTAATTCACAGGAAATAAGTATGGACTATAGATAGGGCTATATGGTATA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAATTCACAGGAAATAAGTATGGACTATAGATAGGGCTATATGGTATA  450

seq1  GTAATCCCTCACCCATGTTTCTATCCTCACTATGGCTCATTTGCTGAGAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAATCCCTCACCCATGTTTCTATCCTCACTATGGCTCATTTGCTGAGAT  500

seq1  AACTGTTTTAATAGGTAAAGTGGTTTTATGTTTCATTATACTATGATAAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGTTTTAATAGGTAAAGTGGTTTTATGTTTCATTATACTATGATAAT  550

seq1  TTCCCCCTTAGTGGAACACTGCACAATGGGTAAGTATATTTCACACATGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCCCTTAGTGGAACACTGCACAATGGGTAAGTATATTTCACACATGT  600

seq1  GATAGAGGACTAAAATCCAAAATATATAAAGAGCTCAAATTGCTAGATAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAGAGGACTAAAATCCAAAATATATAAAGAGCTCAAATTGCTAGATAC  650

seq1  CCAGAAACAAAAGTAACCTAATTTTGTTGGTGAGGATGTGGAGTAAGAGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGAAACAAAAGTAACCTAATTTTGTTGGTGAGGATGTGGAGTAAGAGG  700

seq1  AACACTATCCACTTTCTATAAGATGGTTTTATTAAAGAAAAGGGAAAAAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACTATCCACTTTCTATAAGATGGTTTTATTAAAGAAAAGGGAAAAAG  750

seq1  GCAGACAGGCAGACAGACAGACAGGAAGAAAGAAAGAAAGAAAGAAAGAA  800
      ||||||||||||||||||||||||||||||||||||||       |||||
seq2  GCAGACAGGCAGACAGACAGACAGGAAGAAAGAAAGAA------GAAGAA  794

seq1  AGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG  850
      || ||||||| |||||||||   |||||   |||||   |||||   |||
seq2  AG-AAGAAAG-AAGAAAGAA--GAAGAA--GAAGAA--GAAGAA--GAAG  834

seq1  AAAGAAAGGAAGGGAGGAAGGAAGAAAGGAAGAAAGAAAGAAACAGTTAA  900
      ||   |||||||||||||||||   |||||   |||||   ||||| |||
seq2  AA--GAAGGAAGGGAGGAAGGA--GAAGGA--GAAGAA--GAACAG-TAA  875

seq1  GCTTTAAGCAAACAGTTGGAAGAGCAGTAGACACAGCTCTTGAGCAATTT  950
      ||||  ||||||||||||| ||||||||||||||||||||||||||| ||
seq2  GCTT--AGCAAACAGTTGG-AGAGCAGTAGACACAGCTCTTGAGCAA-TT  921

seq1  TGAACAAAGTGAACATGGGTAGGCAAAGGCACACACAAAAGCAGTATTTT  1000
      ||||| ||||| |||||||||||||||||||||||| |||||||||||||
seq2  TGAAC-AAGTG-ACATGGGTAGGCAAAGGCACACAC-AAAGCAGTATTTT  968

seq1  TTTCCTGATATAGCTATAGCTGTTTATCAGTAGGCTTTTATTATATATTG  1050
      ||| ||||||||||||||||||||||||||||||| |||||  |||| ||
seq2  TTTTCTGATATAGCTATAGCTGTTTATCAGTAGGC-TTTAT--TATAATG  1015

seq1  AG-ATGATTGTCACCACAAAGACTCCCAAAATTTCAAAGTGCTTACAATA  1099
      || |||||||||| |||||||||| || ||||| ||| |||||  |||| 
seq2  AGAATGATTGTCA-CACAAAGACT-CCTAAATTCCAAGGTGCT--CAAT-  1060

seq1  AAGGACTGTGGCTATAGCATGTTGGCTGAATGATCAAACATAC  1142
      |||||| | | |||| |||||||||||| |||||| |||||||
seq2  AAGGAC-GGGCCTAT-GCATGTTGGCTG-ATGATC-AACATAC  1099